View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19045_low_46 (Length: 243)

Name: NF19045_low_46
Description: NF19045
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19045_low_46
NF19045_low_46
[»] chr7 (13 HSPs)
chr7 (105-226)||(21551603-21551724)
chr7 (17-89)||(21551709-21551781)
chr7 (22-59)||(23172406-23172443)
chr7 (29-65)||(31037668-31037704)
chr7 (16-65)||(24614695-24614744)
chr7 (28-65)||(46418555-46418592)
chr7 (29-65)||(1285094-1285130)
chr7 (29-65)||(4098644-4098680)
chr7 (29-65)||(9819574-9819610)
chr7 (29-65)||(10721499-10721535)
chr7 (29-65)||(29461846-29461882)
chr7 (29-65)||(36032932-36032968)
chr7 (16-64)||(40187648-40187696)
[»] chr2 (2 HSPs)
chr2 (29-75)||(41555284-41555330)
chr2 (29-62)||(39733676-39733709)
[»] chr8 (6 HSPs)
chr8 (22-63)||(1230679-1230720)
chr8 (29-65)||(27134445-27134481)
chr8 (22-65)||(36919311-36919354)
chr8 (22-55)||(36588112-36588145)
chr8 (29-65)||(4600303-4600339)
chr8 (29-65)||(7553679-7553715)
[»] chr1 (8 HSPs)
chr1 (21-65)||(41573286-41573330)
chr1 (22-65)||(3573342-3573385)
chr1 (22-65)||(44243873-44243916)
chr1 (22-65)||(44365966-44366009)
chr1 (19-65)||(3431330-3431376)
chr1 (30-64)||(40043183-40043217)
chr1 (29-65)||(1854269-1854305)
chr1 (29-65)||(33229707-33229743)
[»] chr5 (5 HSPs)
chr5 (18-65)||(36648915-36648962)
chr5 (21-64)||(40955512-40955555)
chr5 (37-65)||(18020667-18020695)
chr5 (29-65)||(18278284-18278320)
chr5 (29-65)||(39917909-39917945)
[»] chr4 (10 HSPs)
chr4 (23-65)||(13984661-13984703)
chr4 (23-65)||(23171011-23171053)
chr4 (17-71)||(44195317-44195371)
chr4 (29-71)||(55430590-55430632)
chr4 (28-65)||(18458752-18458789)
chr4 (16-65)||(22164281-22164330)
chr4 (16-65)||(23626381-23626430)
chr4 (29-65)||(30380530-30380566)
chr4 (22-66)||(34595954-34595998)
chr4 (29-65)||(48067133-48067169)
[»] chr3 (7 HSPs)
chr3 (29-67)||(6901479-6901517)
chr3 (29-67)||(37243222-37243260)
chr3 (16-65)||(1757681-1757730)
chr3 (29-65)||(27397637-27397673)
chr3 (16-64)||(36431810-36431858)
chr3 (29-65)||(45669643-45669679)
chr3 (29-65)||(48517671-48517707)
[»] scaffold0012 (1 HSPs)
scaffold0012 (23-64)||(122550-122591)
[»] scaffold0122 (1 HSPs)
scaffold0122 (29-65)||(14211-14247)
[»] scaffold0045 (2 HSPs)
scaffold0045 (29-65)||(63862-63898)
scaffold0045 (29-65)||(71194-71230)
[»] chr6 (2 HSPs)
chr6 (29-65)||(5632134-5632170)
chr6 (29-65)||(14215478-14215514)


Alignment Details
Target: chr7 (Bit Score: 118; Significance: 3e-60; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 105 - 226
Target Start/End: Complemental strand, 21551724 - 21551603
Alignment:
Q  105 atataaatatttgtttaacatgactaataatttaggaatcttgagaaattcaaatggtgaattacatagacatgaactatagaaaataaactcgtgatca 204  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21551724 atataaatatttgtttaacatgactaatcatttaggaatcttgagaaattcaaatggtgaattacatagacatgaactatagaaaataaactcgtgatca 21551625  T
Q  205 catatttaaaagacaagaactt 226  Q
    ||||||||||||||||||||||    
T  21551624 catatttaaaagacaagaactt 21551603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 17 - 89
Target Start/End: Complemental strand, 21551781 - 21551709
Alignment:
Q  17 agacattacatttattatacattgttcctaccaactgagttaaactcactataacaaatataaatatttgttt 89  Q
    |||| ||||||||||||||||||||  ||||||||| ||||||||||||| || |||||||||||||||||||    
T  21551781 agactttacatttattatacattgtctctaccaacttagttaaactcactgtagcaaatataaatatttgttt 21551709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 22 - 59
Target Start/End: Complemental strand, 23172443 - 23172406
Alignment:
Q  22 ttacatttattatacattgttcctaccaactgagttaa 59  Q
    |||||| |||||||||||||||||||||||||||||||    
T  23172443 ttacatatattatacattgttcctaccaactgagttaa 23172406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 29 - 65
Target Start/End: Original strand, 31037668 - 31037704
Alignment:
Q  29 tattatacattgttcctaccaactgagttaaactcac 65  Q
    |||||| ||||||||||||||||||||||||||||||    
T  31037668 tattatgcattgttcctaccaactgagttaaactcac 31037704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 16 - 65
Target Start/End: Complemental strand, 24614744 - 24614695
Alignment:
Q  16 cagacattacatttattatacattgttcctaccaactgagttaaactcac 65  Q
    ||||||||| || |||||| |||| |||||| ||||||||||||||||||    
T  24614744 cagacattatatatattatgcattattcctatcaactgagttaaactcac 24614695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 28 - 65
Target Start/End: Original strand, 46418555 - 46418592
Alignment:
Q  28 ttattatacattgttcctaccaactgagttaaactcac 65  Q
    |||||||||||||||| ||||||||||||||| |||||    
T  46418555 ttattatacattgttcttaccaactgagttaagctcac 46418592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 65
Target Start/End: Original strand, 1285094 - 1285130
Alignment:
Q  29 tattatacattgttcctaccaactgagttaaactcac 65  Q
    |||||| ||||||||||| ||||||||||||||||||    
T  1285094 tattatgcattgttcctatcaactgagttaaactcac 1285130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 65
Target Start/End: Original strand, 4098644 - 4098680
Alignment:
Q  29 tattatacattgttcctaccaactgagttaaactcac 65  Q
    ||||||| ||||||||||||||||||| |||||||||    
T  4098644 tattatatattgttcctaccaactgagctaaactcac 4098680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 65
Target Start/End: Original strand, 9819574 - 9819610
Alignment:
Q  29 tattatacattgttcctaccaactgagttaaactcac 65  Q
    |||||| |||||||||||||||||||| |||||||||    
T  9819574 tattatgcattgttcctaccaactgagataaactcac 9819610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 65
Target Start/End: Original strand, 10721499 - 10721535
Alignment:
Q  29 tattatacattgttcctaccaactgagttaaactcac 65  Q
    |||||| |||||||||||||||||||| |||||||||    
T  10721499 tattatgcattgttcctaccaactgagataaactcac 10721535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 65
Target Start/End: Original strand, 29461846 - 29461882
Alignment:
Q  29 tattatacattgttcctaccaactgagttaaactcac 65  Q
    |||||| |||||| |||||||||||||||||||||||    
T  29461846 tattatgcattgtccctaccaactgagttaaactcac 29461882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 65
Target Start/End: Complemental strand, 36032968 - 36032932
Alignment:
Q  29 tattatacattgttcctaccaactgagttaaactcac 65  Q
    |||||||||||||| |||||||| |||||||||||||    
T  36032968 tattatacattgttactaccaaccgagttaaactcac 36032932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 64
Target Start/End: Original strand, 40187648 - 40187696
Alignment:
Q  16 cagacattacatttattatacattgttcctaccaactgagttaaactca 64  Q
    ||||| |||||| |||||| |||||| ||||||||||||||||| ||||    
T  40187648 cagaccttacatatattatgcattgtccctaccaactgagttaagctca 40187696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 29 - 75
Target Start/End: Complemental strand, 41555330 - 41555284
Alignment:
Q  29 tattatacattgttcctaccaactgagttaaactcactataacaaat 75  Q
    |||||| |||||||||||||||||||||||||||||| | |||||||    
T  41555330 tattatgcattgttcctaccaactgagttaaactcacgagaacaaat 41555284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 29 - 62
Target Start/End: Original strand, 39733676 - 39733709
Alignment:
Q  29 tattatacattgttcctaccaactgagttaaact 62  Q
    ||||||||| ||||||||||||||||||||||||    
T  39733676 tattatacaatgttcctaccaactgagttaaact 39733709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 22 - 63
Target Start/End: Original strand, 1230679 - 1230720
Alignment:
Q  22 ttacatttattatacattgttcctaccaactgagttaaactc 63  Q
    |||||| |||||| ||||||||||||||||||||||||||||    
T  1230679 ttacatatattatgcattgttcctaccaactgagttaaactc 1230720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 29 - 65
Target Start/End: Original strand, 27134445 - 27134481
Alignment:
Q  29 tattatacattgttcctaccaactgagttaaactcac 65  Q
    ||||||||||||||| |||||||||||||||||||||    
T  27134445 tattatacattgttcataccaactgagttaaactcac 27134481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 22 - 65
Target Start/End: Complemental strand, 36919354 - 36919311
Alignment:
Q  22 ttacatttattatacattgttcctaccaactgagttaaactcac 65  Q
    |||||| ||||||||||||||| ||||||||||||||| |||||    
T  36919354 ttacatatattatacattgttcttaccaactgagttaagctcac 36919311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 22 - 55
Target Start/End: Original strand, 36588112 - 36588145
Alignment:
Q  22 ttacatttattatacattgttcctaccaactgag 55  Q
    |||||| |||||||||||||||||||||||||||    
T  36588112 ttacatatattatacattgttcctaccaactgag 36588145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 65
Target Start/End: Original strand, 4600303 - 4600339
Alignment:
Q  29 tattatacattgttcctaccaactgagttaaactcac 65  Q
    ||||||||||||| ||||||||||||| |||||||||    
T  4600303 tattatacattgtccctaccaactgagctaaactcac 4600339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 65
Target Start/End: Complemental strand, 7553715 - 7553679
Alignment:
Q  29 tattatacattgttcctaccaactgagttaaactcac 65  Q
    |||||| |||||| |||||||||||||||||||||||    
T  7553715 tattatgcattgtccctaccaactgagttaaactcac 7553679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 65
Target Start/End: Original strand, 41573286 - 41573330
Alignment:
Q  21 attacatttattatacattgttcctaccaactgagttaaactcac 65  Q
    ||||||| |||||| |||||| |||||||||||||||||||||||    
T  41573286 attacatatattatgcattgtccctaccaactgagttaaactcac 41573330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 22 - 65
Target Start/End: Original strand, 3573342 - 3573385
Alignment:
Q  22 ttacatttattatacattgttcctaccaactgagttaaactcac 65  Q
    |||||| |||||| |||||||||||||||||||||||| |||||    
T  3573342 ttacatatattatgcattgttcctaccaactgagttaagctcac 3573385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 22 - 65
Target Start/End: Complemental strand, 44243916 - 44243873
Alignment:
Q  22 ttacatttattatacattgttcctaccaactgagttaaactcac 65  Q
    |||||| |||||| |||||||||||||||||||| |||||||||    
T  44243916 ttacatatattatgcattgttcctaccaactgagctaaactcac 44243873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 22 - 65
Target Start/End: Original strand, 44365966 - 44366009
Alignment:
Q  22 ttacatttattatacattgttcctaccaactgagttaaactcac 65  Q
    |||||| ||||||  |||||||||||||||||||||||||||||    
T  44365966 ttacatatattatgtattgttcctaccaactgagttaaactcac 44366009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 65
Target Start/End: Complemental strand, 3431376 - 3431330
Alignment:
Q  19 acattacatttattatacattgttcctaccaactgagttaaactcac 65  Q
    ||||| ||| |||||| |||| |||||||||||||||||||||||||    
T  3431376 acattgcatatattatgcattcttcctaccaactgagttaaactcac 3431330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 64
Target Start/End: Original strand, 40043183 - 40043217
Alignment:
Q  30 attatacattgttcctaccaactgagttaaactca 64  Q
    |||||||||||| ||||||||||||||||||||||    
T  40043183 attatacattgtccctaccaactgagttaaactca 40043217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 65
Target Start/End: Complemental strand, 1854305 - 1854269
Alignment:
Q  29 tattatacattgttcctaccaactgagttaaactcac 65  Q
    |||||| |||| |||||||||||||||||||||||||    
T  1854305 tattatgcattattcctaccaactgagttaaactcac 1854269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 65
Target Start/End: Original strand, 33229707 - 33229743
Alignment:
Q  29 tattatacattgttcctaccaactgagttaaactcac 65  Q
    |||||| |||||||||||||||||||||||| |||||    
T  33229707 tattatgcattgttcctaccaactgagttaagctcac 33229743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 65
Target Start/End: Complemental strand, 36648962 - 36648915
Alignment:
Q  18 gacattacatttattatacattgttcctaccaactgagttaaactcac 65  Q
    |||||| ||| ||||||||||||||| ||| |||||||||||||||||    
T  36648962 gacattgcatatattatacattgttcatacaaactgagttaaactcac 36648915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 21 - 64
Target Start/End: Original strand, 40955512 - 40955555
Alignment:
Q  21 attacatttattatacattgttcctaccaactgagttaaactca 64  Q
    ||||||| ||||||||||||||||||| ||||||| ||||||||    
T  40955512 attacatatattatacattgttcctactaactgagctaaactca 40955555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 65
Target Start/End: Original strand, 18020667 - 18020695
Alignment:
Q  37 attgttcctaccaactgagttaaactcac 65  Q
    |||||||||||||||||||||||||||||    
T  18020667 attgttcctaccaactgagttaaactcac 18020695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 65
Target Start/End: Original strand, 18278284 - 18278320
Alignment:
Q  29 tattatacattgttcctaccaactgagttaaactcac 65  Q
    |||||| |||||||| |||||||||||||||||||||    
T  18278284 tattatgcattgttcttaccaactgagttaaactcac 18278320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 65
Target Start/End: Original strand, 39917909 - 39917945
Alignment:
Q  29 tattatacattgttcctaccaactgagttaaactcac 65  Q
    |||||| |||||||| |||||||||||||||||||||    
T  39917909 tattatgcattgttcttaccaactgagttaaactcac 39917945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 65
Target Start/End: Original strand, 13984661 - 13984703
Alignment:
Q  23 tacatttattatacattgttcctaccaactgagttaaactcac 65  Q
    ||||| |||||| |||||||||||||||||||||||| |||||    
T  13984661 tacatatattatgcattgttcctaccaactgagttaagctcac 13984703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 65
Target Start/End: Complemental strand, 23171053 - 23171011
Alignment:
Q  23 tacatttattatacattgttcctaccaactgagttaaactcac 65  Q
    ||||| |||||||||||||||||| |||||||||||| |||||    
T  23171053 tacatatattatacattgttcctaacaactgagttaagctcac 23171011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 71
Target Start/End: Original strand, 44195317 - 44195371
Alignment:
Q  17 agacattacatttattatacattgttcctaccaactgagttaaactcactataac 71  Q
    |||| |||||| ||||||  ||| ||||||||||||||||||||||||| |||||    
T  44195317 agactttacatatattatgtattattcctaccaactgagttaaactcacgataac 44195371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 71
Target Start/End: Complemental strand, 55430632 - 55430590
Alignment:
Q  29 tattatacattgttcctaccaactgagttaaactcactataac 71  Q
    |||||| |||| ||||||||||||||||||||||||| |||||    
T  55430632 tattatgcattattcctaccaactgagttaaactcacgataac 55430590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 28 - 65
Target Start/End: Complemental strand, 18458789 - 18458752
Alignment:
Q  28 ttattatacattgttcctaccaactgagttaaactcac 65  Q
    ||||||| ||||||| ||||||||||||||||||||||    
T  18458789 ttattatgcattgtttctaccaactgagttaaactcac 18458752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 16 - 65
Target Start/End: Original strand, 22164281 - 22164330
Alignment:
Q  16 cagacattacatttattatacattgttcctaccaactgagttaaactcac 65  Q
    ||||| |||||| |||||| ||||||||||||||||| || |||||||||    
T  22164281 cagaccttacatatattatgcattgttcctaccaactaagctaaactcac 22164330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 16 - 65
Target Start/End: Complemental strand, 23626430 - 23626381
Alignment:
Q  16 cagacattacatttattatacattgttcctaccaactgagttaaactcac 65  Q
    ||||||||| || |||||||||||||   |||||||||||||||||||||    
T  23626430 cagacattatatatattatacattgtctataccaactgagttaaactcac 23626381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 65
Target Start/End: Complemental strand, 30380566 - 30380530
Alignment:
Q  29 tattatacattgttcctaccaactgagttaaactcac 65  Q
    ||||||||||||| | |||||||||||||||||||||    
T  30380566 tattatacattgtccttaccaactgagttaaactcac 30380530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 66
Target Start/End: Original strand, 34595954 - 34595998
Alignment:
Q  22 ttacatttattatacattgttcctaccaactgagttaaactcact 66  Q
    |||||| |||||| |||||| | ||||||||||||||||||||||    
T  34595954 ttacatatattatgcattgtccttaccaactgagttaaactcact 34595998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 65
Target Start/End: Complemental strand, 48067169 - 48067133
Alignment:
Q  29 tattatacattgttcctaccaactgagttaaactcac 65  Q
    ||||||||||||| ||||||||||||||| |||||||    
T  48067169 tattatacattgtccctaccaactgagtttaactcac 48067133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 67
Target Start/End: Original strand, 6901479 - 6901517
Alignment:
Q  29 tattatacattgttcctaccaactgagttaaactcacta 67  Q
    ||||||||||||||||||||||||||| ||| |||||||    
T  6901479 tattatacattgttcctaccaactgagctaagctcacta 6901517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 67
Target Start/End: Complemental strand, 37243260 - 37243222
Alignment:
Q  29 tattatacattgttcctaccaactgagttaaactcacta 67  Q
    |||||| ||||||||||||||| ||||||||||||||||    
T  37243260 tattattcattgttcctaccaattgagttaaactcacta 37243222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 16 - 65
Target Start/End: Original strand, 1757681 - 1757730
Alignment:
Q  16 cagacattacatttattatacattgttcctaccaactgagttaaactcac 65  Q
    ||||| || ||| |||||| |||||||||||||||||||||||| |||||    
T  1757681 cagacgttgcatatattatgcattgttcctaccaactgagttaagctcac 1757730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 65
Target Start/End: Original strand, 27397637 - 27397673
Alignment:
Q  29 tattatacattgttcctaccaactgagttaaactcac 65  Q
    ||||||||||||| | |||||||||||||||||||||    
T  27397637 tattatacattgtccataccaactgagttaaactcac 27397673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 64
Target Start/End: Complemental strand, 36431858 - 36431810
Alignment:
Q  16 cagacattacatttattatacattgttcctaccaactgagttaaactca 64  Q
    |||||||| ||| ||||||||||| | ||||||||||||| ||||||||    
T  36431858 cagacattgcatatattatacattatccctaccaactgagctaaactca 36431810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 65
Target Start/End: Original strand, 45669643 - 45669679
Alignment:
Q  29 tattatacattgttcctaccaactgagttaaactcac 65  Q
    |||||||||||||| ||||||| ||||||||||||||    
T  45669643 tattatacattgtttctaccaattgagttaaactcac 45669679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 65
Target Start/End: Complemental strand, 48517707 - 48517671
Alignment:
Q  29 tattatacattgttcctaccaactgagttaaactcac 65  Q
    |||||| ||||||||||| ||||||||||||||||||    
T  48517707 tattatgcattgttcctatcaactgagttaaactcac 48517671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 23 - 64
Target Start/End: Complemental strand, 122591 - 122550
Alignment:
Q  23 tacatttattatacattgttcctaccaactgagttaaactca 64  Q
    ||||| ||||||||| |||||||||||||| |||||||||||    
T  122591 tacatatattatacaatgttcctaccaactaagttaaactca 122550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0122 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0122
Description:

Target: scaffold0122; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 65
Target Start/End: Original strand, 14211 - 14247
Alignment:
Q  29 tattatacattgttcctaccaactgagttaaactcac 65  Q
    |||||| |||||||| |||||||||||||||||||||    
T  14211 tattatgcattgttcataccaactgagttaaactcac 14247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 65
Target Start/End: Complemental strand, 63898 - 63862
Alignment:
Q  29 tattatacattgttcctaccaactgagttaaactcac 65  Q
    ||||||||||||| ||||||||||||| |||||||||    
T  63898 tattatacattgtccctaccaactgagctaaactcac 63862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 65
Target Start/End: Complemental strand, 71230 - 71194
Alignment:
Q  29 tattatacattgttcctaccaactgagttaaactcac 65  Q
    ||||||||||||| ||||||||||||| |||||||||    
T  71230 tattatacattgtccctaccaactgagctaaactcac 71194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 65
Target Start/End: Complemental strand, 5632170 - 5632134
Alignment:
Q  29 tattatacattgttcctaccaactgagttaaactcac 65  Q
    |||||||||||||||||||||| |||||||| |||||    
T  5632170 tattatacattgttcctaccaattgagttaagctcac 5632134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 65
Target Start/End: Original strand, 14215478 - 14215514
Alignment:
Q  29 tattatacattgttcctaccaactgagttaaactcac 65  Q
    ||||| ||||||||| |||||||||||||||||||||    
T  14215478 tattaaacattgttcataccaactgagttaaactcac 14215514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University