View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19045_low_47 (Length: 242)
Name: NF19045_low_47
Description: NF19045
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19045_low_47 |
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Alignment Details
Target: chr2 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 30260869 - 30261093
Alignment:
| Q |
1 |
taacaagattcaacacaaaattcagctcccactctcccaccaagtcggatcatggttttgataccacttgttggagagtcggaggcgctggagcatatct |
100 |
Q |
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| T |
30260869 |
taacaagattcaacacagaattcagctcccactctcccaccaagttggatcatggttttgataccacttattggagagtcggagacggtggagcatatct |
30260968 |
T |
|
| Q |
101 |
tttgttgtggtttacttcataagccatattaaatactttagaaaacaatttattctaatttattatatgaaaattaacttcgaagaaatatacatgggga |
200 |
Q |
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| T |
30260969 |
tttgttgtggtttacttcataagccatattaaatactttagaaaacaatttattctaatttattatatgaaaattaacttcgaagaagtatgcatgggga |
30261068 |
T |
|
| Q |
201 |
attacgtatttaattatgatcaatg |
225 |
Q |
| |
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||||||||||||||||||||||||| |
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| T |
30261069 |
attacgtatttaattatgatcaatg |
30261093 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 20 - 225
Target Start/End: Complemental strand, 29447816 - 29447611
Alignment:
| Q |
20 |
attcagctcccactctcccaccaagtcggatcatggttttgataccacttgttggagagtcggaggcgctggagcatatcttttgttgtggtttacttca |
119 |
Q |
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| T |
29447816 |
attcagctctcgctcttccaccaggtcggattatggctctgataccacttgttggaaaatcagaggcgctggaacatatcttttgttgtggtttacttca |
29447717 |
T |
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| Q |
120 |
taagccatattaaatactttagaaaacaatttattctaatttattatatgaaaattaacttcgaagaaatatacatggggaattacgtatttaattatga |
219 |
Q |
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| T |
29447716 |
tatgccatattaaatactttagaaaacaatttattctaatttattatatgaaaattaaattcgaagaaatatacatgcggaattacgtatttaattatga |
29447617 |
T |
|
| Q |
220 |
tcaatg |
225 |
Q |
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|||||| |
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| T |
29447616 |
tcaatg |
29447611 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 31 - 79
Target Start/End: Original strand, 1417913 - 1417961
Alignment:
| Q |
31 |
actctcccaccaagtcggatcatggttttgataccacttgttggagagt |
79 |
Q |
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||||||||||||||| | | || |||||||||||||||||||||||||| |
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| T |
1417913 |
actctcccaccaagtggaaccagggttttgataccacttgttggagagt |
1417961 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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