View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19045_low_53 (Length: 221)

Name: NF19045_low_53
Description: NF19045
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19045_low_53
NF19045_low_53
[»] chr2 (10 HSPs)
chr2 (21-205)||(4865608-4865792)
chr2 (77-205)||(25558946-25559074)
chr2 (110-204)||(36549303-36549396)
chr2 (74-132)||(37828446-37828504)
chr2 (158-192)||(29667724-29667758)
chr2 (71-132)||(37828723-37828784)
chr2 (154-187)||(15421425-15421458)
chr2 (75-131)||(25557836-25557893)
chr2 (92-132)||(4865474-4865514)
chr2 (72-132)||(29667768-29667828)
[»] chr3 (7 HSPs)
chr3 (77-192)||(30259804-30259919)
chr3 (74-184)||(53007332-53007442)
chr3 (140-187)||(7313197-7313244)
chr3 (107-184)||(53007677-53007754)
chr3 (152-184)||(8946154-8946186)
chr3 (74-184)||(37289661-37289771)
chr3 (71-127)||(38421364-38421420)
[»] chr7 (18 HSPs)
chr7 (106-205)||(2169042-2169141)
chr7 (95-193)||(25921054-25921152)
chr7 (74-137)||(1505543-1505606)
chr7 (140-203)||(23475115-23475178)
chr7 (133-203)||(19439862-19439932)
chr7 (133-203)||(23457242-23457312)
chr7 (74-132)||(23475730-23475788)
chr7 (74-132)||(23533269-23533327)
chr7 (74-132)||(23534143-23534201)
chr7 (75-132)||(2169265-2169322)
chr7 (140-205)||(23443524-23443589)
chr7 (157-204)||(9880886-9880933)
chr7 (101-185)||(12869887-12869967)
chr7 (75-177)||(29340799-29340901)
chr7 (133-203)||(23533456-23533526)
chr7 (75-149)||(31893885-31893959)
chr7 (74-147)||(23457426-23457499)
chr7 (74-138)||(23443335-23443399)
[»] chr5 (7 HSPs)
chr5 (74-192)||(17441225-17441343)
chr5 (154-193)||(7148475-7148514)
chr5 (73-132)||(17476210-17476269)
chr5 (140-187)||(36193519-36193566)
chr5 (73-131)||(38299727-38299784)
chr5 (74-131)||(7148284-7148339)
chr5 (68-120)||(41048642-41048694)
[»] chr8 (7 HSPs)
chr8 (94-184)||(5155437-5155527)
chr8 (95-187)||(30943613-30943702)
chr8 (91-192)||(13706036-13706137)
chr8 (74-183)||(13987326-13987434)
chr8 (138-179)||(16496255-16496296)
chr8 (74-132)||(29795754-29795813)
chr8 (74-132)||(13706216-13706274)
[»] chr4 (5 HSPs)
chr4 (74-192)||(26310336-26310454)
chr4 (137-187)||(32121466-32121516)
chr4 (73-130)||(12828598-12828656)
chr4 (154-192)||(20821862-20821900)
chr4 (95-131)||(26310235-26310271)
[»] chr6 (4 HSPs)
chr6 (140-205)||(34448291-34448356)
chr6 (74-130)||(4974691-4974747)
chr6 (74-129)||(5449485-5449541)
chr6 (75-132)||(34448469-34448526)
[»] chr1 (2 HSPs)
chr1 (104-149)||(10291621-10291666)
chr1 (73-130)||(36752349-36752406)


Alignment Details
Target: chr2 (Bit Score: 165; Significance: 2e-88; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 21 - 205
Target Start/End: Complemental strand, 4865792 - 4865608
Alignment:
Q  21 tatgtaaattcatatatctcagatataataaaagcaaaagatgactcacattagaaaattgctctcctcacaacaaaaaatgttcactcccatacaaact 120  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||    
T  4865792 tatgtaaattcatatatctcagatataataaaagcaaaagatgactcacagtagaaaattgctctcctcccaacaaaaaatgttcactcccatacaaact 4865693  T
Q  121 gaccaaaataccatccacatgacttaagttacacatgtgttaaacccaacgtgacttaagtcacgttcgctataatggtacatcc 205  Q
    ||||||||||||| ||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||    
T  4865692 gaccaaaataccacccacatgacttaagttacacaggtgttaaatccaacgtgacttaagtcacgttcgctataatggtacatcc 4865608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 77 - 205
Target Start/End: Complemental strand, 25559074 - 25558946
Alignment:
Q  77 aattgctctcctcacaacaaaaaatgttcactcccatacaaactgaccaaaataccatccacatgacttaagttacacatgtgttaaacccaacgtgact 176  Q
    ||||||||| ||| ||  |||| ||| |||||| ||||||||||  | |||||| ||||||  |||||||||| ||  | ||||||||||||||||||||    
T  25559074 aattgctcttctcccataaaaatatgctcactctcatacaaactttcgaaaatatcatccatgtgacttaagtcacgtaggtgttaaacccaacgtgact 25558975  T
Q  177 taagtcacgttcgctataatggtacatcc 205  Q
    |||||||||||||||| | ||||||||||    
T  25558974 taagtcacgttcgctacattggtacatcc 25558946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 110 - 204
Target Start/End: Original strand, 36549303 - 36549396
Alignment:
Q  110 ccatacaaactgaccaaaataccatccacatgacttaagttacacatgtgttaa-acccaacgtgacttaagtcacgttcgctataatggtacatc 204  Q
    |||||||||||||| ||||||||  |||| |||||||||| || |||||||||  | |||||||||||||||||||||| |||| | |||||||||    
T  36549303 ccatacaaactgacgaaaatacc--ccacgtgacttaagtcacgcatgtgttattatccaacgtgacttaagtcacgtttgctacattggtacatc 36549396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 74 - 132
Target Start/End: Original strand, 37828446 - 37828504
Alignment:
Q  74 gaaaattgctctcctcacaacaaaaaatgttcactcccatacaaactgaccaaaatacc 132  Q
    |||||||||||| ||| |||||||||| | |||||| ||||||||||||||||||||||    
T  37828446 gaaaattgctcttctcccaacaaaaaacgatcactcacatacaaactgaccaaaatacc 37828504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 158 - 192
Target Start/End: Complemental strand, 29667758 - 29667724
Alignment:
Q  158 tgttaaacccaacgtgacttaagtcacgttcgcta 192  Q
    |||||||||||||||||||||||||||||||||||    
T  29667758 tgttaaacccaacgtgacttaagtcacgttcgcta 29667724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 71 - 132
Target Start/End: Complemental strand, 37828784 - 37828723
Alignment:
Q  71 ttagaaaattgctctcctcacaacaaaaaatgttcactcccatacaaactgaccaaaatacc 132  Q
    ||||||||||||||| ||| | ||||||||  |||||||| ||||||||| |||||||||||    
T  37828784 ttagaaaattgctcttctcccgacaaaaaacattcactcctatacaaacttaccaaaatacc 37828723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 154 - 187
Target Start/End: Original strand, 15421425 - 15421458
Alignment:
Q  154 catgtgttaaacccaacgtgacttaagtcacgtt 187  Q
    |||||||||||||||| |||||||||||||||||    
T  15421425 catgtgttaaacccaatgtgacttaagtcacgtt 15421458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 75 - 131
Target Start/End: Original strand, 25557836 - 25557893
Alignment:
Q  75 aaaattgctctcctcacaacaaaaaat-gttcactcccatacaaactgaccaaaatac 131  Q
    ||||||||||| ||  ||||||||||  | ||||||||||||||||||||||||||||    
T  25557836 aaaattgctcttcttccaacaaaaaaacgctcactcccatacaaactgaccaaaatac 25557893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 92 - 132
Target Start/End: Original strand, 4865474 - 4865514
Alignment:
Q  92 aacaaaaaatgttcactcccatacaaactgaccaaaatacc 132  Q
    ||||||||| |||||||| |||||||||| |||||||||||    
T  4865474 aacaaaaaacgttcactctcatacaaacttaccaaaatacc 4865514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 132
Target Start/End: Complemental strand, 29667828 - 29667768
Alignment:
Q  72 tagaaaattgctctcctcacaacaaaaaatgttcactcccatacaaactgaccaaaatacc 132  Q
    |||||||||||||| ||| |||||||||| | |||| | ||||| ||||| ||||||||||    
T  29667828 tagaaaattgctcttctcccaacaaaaaacgctcaccctcatacgaactggccaaaatacc 29667768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 68; Significance: 2e-30; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 77 - 192
Target Start/End: Complemental strand, 30259919 - 30259804
Alignment:
Q  77 aattgctctcctcacaacaaaaaatgttcactcccatacaaactgaccaaaataccatccacatgacttaagttacacatgtgttaaacccaacgtgact 176  Q
    ||||||||| ||| |||||||||| | ||||||||||||||||||| |||||||||  |||||||||||| || || || ||||||||||||||||||||    
T  30259919 aattgctcttctcccaacaaaaaacgctcactcccatacaaactgatcaaaatacccaccacatgacttatgtcacgcaggtgttaaacccaacgtgact 30259820  T
Q  177 taagtcacgttcgcta 192  Q
    ||||||| ||||||||    
T  30259819 taagtcatgttcgcta 30259804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 74 - 184
Target Start/End: Original strand, 53007332 - 53007442
Alignment:
Q  74 gaaaattgctctcctcacaacaaaaaatgttcactcccatacaaactgaccaaaataccatccacatgacttaagttacacatgtgttaaacccaacgtg 173  Q
    |||||||||||| ||| || | || | || || |||||||||||| |||| ||||||||| |||| |||||||||| || || ||||||  |||||||||    
T  53007332 gaaaattgctcttctcccatccaatattgctccctcccatacaaattgacgaaaataccacccacgtgacttaagtcacgcaggtgttatgcccaacgtg 53007431  T
Q  174 acttaagtcac 184  Q
    |||||||||||    
T  53007432 acttaagtcac 53007442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 140 - 187
Target Start/End: Original strand, 7313197 - 7313244
Alignment:
Q  140 tgacttaagttacacatgtgttaaacccaacgtgacttaagtcacgtt 187  Q
    |||||||||| |||||||| ||||||||||||||||||||||||||||    
T  7313197 tgacttaagtcacacatgtattaaacccaacgtgacttaagtcacgtt 7313244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 107 - 184
Target Start/End: Complemental strand, 53007754 - 53007677
Alignment:
Q  107 ctcccatacaaactgaccaaaataccatccacatgacttaagttacacatgtgttaaacccaacgtgacttaagtcac 184  Q
    ||||||||||||||||| ||||||||  |||  |||||||||| || ||||||||| |||||| |||| |||||||||    
T  53007754 ctcccatacaaactgacgaaaataccccccatgtgacttaagtcacgcatgtgttatacccaatgtgagttaagtcac 53007677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 152 - 184
Target Start/End: Original strand, 8946154 - 8946186
Alignment:
Q  152 cacatgtgttaaacccaacgtgacttaagtcac 184  Q
    |||||||||||||||||||||||||||||||||    
T  8946154 cacatgtgttaaacccaacgtgacttaagtcac 8946186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 74 - 184
Target Start/End: Original strand, 37289661 - 37289771
Alignment:
Q  74 gaaaattgctctcctcacaacaaaaaatgttcactcccatacaaactgaccaaaataccatccacatgacttaagttacacatgtgttaaacccaacgtg 173  Q
    |||||||||||| ||| || ||| |  || |||| |||||||||||| || ||||||||  | ||||||||||||||||  | |||||| ||| | ||||    
T  37289661 gaaaattgctcttctcccatcaagatttgctcacccccatacaaactaacaaaaatacccccaacatgacttaagttacgaaagtgttataccgagcgtg 37289760  T
Q  174 acttaagtcac 184  Q
    | |||||||||    
T  37289761 agttaagtcac 37289771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 71 - 127
Target Start/End: Complemental strand, 38421420 - 38421364
Alignment:
Q  71 ttagaaaattgctctcctcacaacaaaaaatgttcactcccatacaaactgaccaaa 127  Q
    ||||||||||||||| ||| |||||||||| | | |||||| ||||||| |||||||    
T  38421420 ttagaaaattgctcttctcccaacaaaaaacgctgactcccttacaaaccgaccaaa 38421364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 106 - 205
Target Start/End: Original strand, 2169042 - 2169141
Alignment:
Q  106 actcccatacaaactgaccaaaataccatccacatgacttaagttacacatgtgttaaacccaacgtgacttaagtcacgttcgctataatggtacatcc 205  Q
    |||| ||||||||||||||||||||    || | ||| |||| | |||||||| ||| ||||||||||||||||||||||||||||| | |||| |||||    
T  2169042 actctcatacaaactgaccaaaatattccccgcctgagttaactcacacatgtattatacccaacgtgacttaagtcacgttcgctacattggtgcatcc 2169141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 95 - 193
Target Start/End: Original strand, 25921054 - 25921152
Alignment:
Q  95 aaaaaatgttcactcccatacaaactgaccaaaataccatccacatgacttaagttacacatgtgttaaacccaacgtgacttaagtcacgttcgctat 193  Q
    |||||| |||||||||||||||||||||  |||| |||||  |||||| |||| | ||  | |||||||| ||||| |||||||||| |||||||||||    
T  25921054 aaaaaacgttcactcccatacaaactgattaaaacaccatttacatgaattaattcacgtaggtgttaaatccaacatgacttaagttacgttcgctat 25921152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 74 - 137
Target Start/End: Original strand, 1505543 - 1505606
Alignment:
Q  74 gaaaattgctctcctcacaacaaaaaatgttcactcccatacaaactgaccaaaataccatcca 137  Q
    |||||||||||| ||| |||||||||| ||| ||||||||| |||| |||||||||||| ||||    
T  1505543 gaaaattgctcttctcccaacaaaaaacgtttactcccatataaaccgaccaaaataccctcca 1505606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 140 - 203
Target Start/End: Complemental strand, 23475178 - 23475115
Alignment:
Q  140 tgacttaagttacacatgtgttaaacccaacgtgacttaagtcacgttcgctataatggtacat 203  Q
    |||||||||| || |||||||||||| ||  ||||||||||| ||||||||||||||| |||||    
T  23475178 tgacttaagtcacgcatgtgttaaactcattgtgacttaagttacgttcgctataatgatacat 23475115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 133 - 203
Target Start/End: Complemental strand, 19439932 - 19439862
Alignment:
Q  133 atccacatgacttaagttacacatgtgttaaacccaacgtgacttaagtcacgttcgctataatggtacat 203  Q
    |||||| |||||||||| || || ||||||||| ||  ||||||||||| ||||||||||||||| |||||    
T  19439932 atccacgtgacttaagtcacgcaggtgttaaactcattgtgacttaagttacgttcgctataatgatacat 19439862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 133 - 203
Target Start/End: Original strand, 23457242 - 23457312
Alignment:
Q  133 atccacatgacttaagttacacatgtgttaaacccaacgtgacttaagtcacgttcgctataatggtacat 203  Q
    |||||| |||||||||| || || ||||||||| ||  ||||||||||| ||||||||||||||| |||||    
T  23457242 atccacgtgacttaagtcacgcaggtgttaaactcattgtgacttaagttacgttcgctataatgatacat 23457312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 74 - 132
Target Start/End: Complemental strand, 23475788 - 23475730
Alignment:
Q  74 gaaaattgctctcctcacaacaaaaaatgttcactcccatacaaactgaccaaaatacc 132  Q
    |||||||||||| ||| |||||||||||| |||||| |||||||||| || ||||||||    
T  23475788 gaaaattgctcttctcccaacaaaaaatgctcactctcatacaaactaacaaaaatacc 23475730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 74 - 132
Target Start/End: Original strand, 23533269 - 23533327
Alignment:
Q  74 gaaaattgctctcctcacaacaaaaaatgttcactcccatacaaactgaccaaaatacc 132  Q
    |||||||| ||| ||| |||||||||||| ||||||||||| ||||| |||||||||||    
T  23533269 gaaaattgttcttctcccaacaaaaaatgctcactcccataaaaacttaccaaaatacc 23533327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 74 - 132
Target Start/End: Complemental strand, 23534201 - 23534143
Alignment:
Q  74 gaaaattgctctcctcacaacaaaaaatgttcactcccatacaaactgaccaaaatacc 132  Q
    |||||||||||| ||| |||||||||||| |||||| |||||||||| || ||||||||    
T  23534201 gaaaattgctcttctcccaacaaaaaatgctcactctcatacaaactaacaaaaatacc 23534143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 75 - 132
Target Start/End: Complemental strand, 2169322 - 2169265
Alignment:
Q  75 aaaattgctctcctcacaacaaaaaatgttcactcccatacaaactgaccaaaatacc 132  Q
    ||||||||||| ||| |||||||||| | |||||||||||||||| || |||||||||    
T  2169322 aaaattgctcttctcccaacaaaaaacgctcactcccatacaaaccgatcaaaatacc 2169265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 140 - 205
Target Start/End: Complemental strand, 23443589 - 23443524
Alignment:
Q  140 tgacttaagttacacatgtgttaaacccaacgtgacttaagtcacgttcgctataatggtacatcc 205  Q
    |||||||||| | ||| ||||||||| ||  ||||||||||| ||||||||||||||| |||||||    
T  23443589 tgacttaagtcaaacaggtgttaaactcattgtgacttaagttacgttcgctataatgatacatcc 23443524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 157 - 204
Target Start/End: Original strand, 9880886 - 9880933
Alignment:
Q  157 gtgttaaacccaacgtgacttaagtcacgttcgctataatggtacatc 204  Q
    ||||||||||||||| |||||||||||||||||| | | |||||||||    
T  9880886 gtgttaaacccaacgcgacttaagtcacgttcgccacattggtacatc 9880933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 101 - 185
Target Start/End: Complemental strand, 12869967 - 12869887
Alignment:
Q  101 tgttcactcccatacaaactgaccaaaataccatccacatgacttaagttacacatgtgttaaacccaacgtgacttaagtcacg 185  Q
    |||||| ||||||||||| |||| |||||||||    | |||||||||| || || |||||||| |||||||| |||||||||||    
T  12869967 tgttcattcccatacaaattgacgaaaatacca----cgtgacttaagtcacgcaggtgttaaatccaacgtggcttaagtcacg 12869887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 75 - 177
Target Start/End: Complemental strand, 29340901 - 29340799
Alignment:
Q  75 aaaattgctctcctcacaacaaaaaat-gttcactcccatacaaactgaccaaaataccatccacatgacttaagttacacatgtgttaaacccaacgtg 173  Q
    ||||||||||| ||| || |||||||  |||||||| |||| ||||||| ||||||||| || | |||| ||| || ||||||||||||||  |||||||    
T  29340901 aaaattgctcttctcccaccaaaaaaaagttcactctcatataaactgatcaaaataccctc-atatgatttaggtcacacatgtgttaaattcaacgtg 29340803  T
Q  174 actt 177  Q
    ||||    
T  29340802 actt 29340799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 133 - 203
Target Start/End: Complemental strand, 23533526 - 23533456
Alignment:
Q  133 atccacatgacttaagttacacatgtgttaaacccaacgtgacttaagtcacgttcgctataatggtacat 203  Q
    |||||| |||| ||||| || || ||||||||| ||  ||||||||||| ||||||||||||||| |||||    
T  23533526 atccacgtgacctaagtcacgcaggtgttaaactcattgtgacttaagttacgttcgctataatgatacat 23533456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 75 - 149
Target Start/End: Complemental strand, 31893959 - 31893885
Alignment:
Q  75 aaaattgctctcctcacaacaaaaaatgttcactcccatacaaactgaccaaaataccatccacatgacttaagt 149  Q
    ||||||||||| ||| || | |||| || |||||| ||||||||||||| |||||||  ||||||| ||||||||    
T  31893959 aaaattgctcttctcccatccaaaattgctcactctcatacaaactgacaaaaatactctccacataacttaagt 31893885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 74 - 147
Target Start/End: Complemental strand, 23457499 - 23457426
Alignment:
Q  74 gaaaattgctctcctcacaacaaaaaatgttcactcccatacaaactgaccaaaataccatccacatgacttaa 147  Q
    |||||||| ||| |||  ||||||||| | ||||||||||| ||||| ||||||||||| ||||| ||| ||||    
T  23457499 gaaaattgttcttctccaaacaaaaaacgctcactcccataaaaacttaccaaaataccttccacgtgagttaa 23457426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 74 - 138
Target Start/End: Original strand, 23443335 - 23443399
Alignment:
Q  74 gaaaattgctctcctcacaacaaaaaatgttcactcccatacaaactgaccaaaataccatccac 138  Q
    |||||||| ||| ||| |||||||||| | ||||||||||| ||||| | ||||||||| |||||    
T  23443335 gaaaattgttcttctcccaacaaaaaacgctcactcccataaaaacttatcaaaataccctccac 23443399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 74 - 192
Target Start/End: Original strand, 17441225 - 17441343
Alignment:
Q  74 gaaaattgctctcctcacaacaaaaaat-gttcactcccatacaaactgaccaaaataccatccacatgacttaagttacacatgtgttaaacccaacgt 172  Q
    |||||||||||| ||  ||||||||||  | |||||||||||||||||||| |||||||| ||    ||| |||| | || |||||||||||  ||||||    
T  17441225 gaaaattgctcttctttcaacaaaaaaacgctcactcccatacaaactgacaaaaatacc-tctgtgtgagttaactcacgcatgtgttaaattcaacgt 17441323  T
Q  173 gacttaagtcacgttcgcta 192  Q
    ||||||||||||||||||||    
T  17441324 gacttaagtcacgttcgcta 17441343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 154 - 193
Target Start/End: Complemental strand, 7148514 - 7148475
Alignment:
Q  154 catgtgttaaacccaacgtgacttaagtcacgttcgctat 193  Q
    ||||||||||||||||| ||||||||||||||||||||||    
T  7148514 catgtgttaaacccaacatgacttaagtcacgttcgctat 7148475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 73 - 132
Target Start/End: Complemental strand, 17476269 - 17476210
Alignment:
Q  73 agaaaattgctctcctcacaacaaaaaatgttcactcccatacaaactgaccaaaatacc 132  Q
    ||||||||| ||| ||| |||||||||| |||| ||| ||||||||||||||||||||||    
T  17476269 agaaaattgttcttctcccaacaaaaaacgttcgctctcatacaaactgaccaaaatacc 17476210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 140 - 187
Target Start/End: Original strand, 36193519 - 36193566
Alignment:
Q  140 tgacttaagttacacatgtgttaaacccaacgtgacttaagtcacgtt 187  Q
    |||||||||| || |||||||||||||| |||||||||||||||||||    
T  36193519 tgacttaagtcacgcatgtgttaaacccgacgtgacttaagtcacgtt 36193566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 73 - 131
Target Start/End: Original strand, 38299727 - 38299784
Alignment:
Q  73 agaaaattgctctcctcacaacaaaaaatgttcactcccatacaaactgaccaaaatac 131  Q
    ||||||||||||| ||| ||| |||| | |||||||||||||||||||||| |||||||    
T  38299727 agaaaattgctcttctcccaa-aaaagacgttcactcccatacaaactgactaaaatac 38299784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 74 - 131
Target Start/End: Original strand, 7148284 - 7148339
Alignment:
Q  74 gaaaattgctctcctcacaacaaaaaatgttcactcccatacaaactgaccaaaatac 131  Q
    |||||||||| || || |||||||||| | ||||||||||||||||||||||||||||    
T  7148284 gaaaattgctttc-tcccaacaaaaaa-gctcactcccatacaaactgaccaaaatac 7148339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 68 - 120
Target Start/End: Original strand, 41048642 - 41048694
Alignment:
Q  68 acattagaaaattgctctcctcacaacaaaaaatgttcactcccatacaaact 120  Q
    ||||| |||||||||||| ||| |||||||||| |  ||||||||||||||||    
T  41048642 acatttgaaaattgctcttctcccaacaaaaaacgcacactcccatacaaact 41048694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 94 - 184
Target Start/End: Complemental strand, 5155527 - 5155437
Alignment:
Q  94 caaaaaatgttcactcccatacaaactgaccaaaataccatccacatgacttaagttacacatgtgttaaacccaacgtgacttaagtcac 184  Q
    |||||| || || ||| ||||||||||||| |||||||| ||||| || ||||||| || || |||||| | |||||||||||||||||||    
T  5155527 caaaaattgctccctcacatacaaactgacgaaaataccttccacgtgtcttaagtcacgcaggtgttatatccaacgtgacttaagtcac 5155437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 95 - 187
Target Start/End: Complemental strand, 30943702 - 30943613
Alignment:
Q  95 aaaaaatgttcactcccatacaaactgaccaaaataccatccacatgacttaagttacacatgtgttaaacccaacgtgacttaagtcacgtt 187  Q
    ||||| ||||||||||||  ||||||  ||||||| ||   ||| |||||||| | || ||||||||||||||| ||||||||||||||||||    
T  30943702 aaaaattgttcactcccaaccaaactttccaaaatccc---cacgtgacttaattcacgcatgtgttaaacccagcgtgacttaagtcacgtt 30943613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 91 - 192
Target Start/End: Original strand, 13706036 - 13706137
Alignment:
Q  91 caacaaaaaatgttcactcccatacaaactgaccaaaataccatccacatgacttaagttacacatgtgttaaacccaacgtgacttaagtcacgttcgc 190  Q
    |||||||||  |||||| | | |||||||||||||||| ||   |  ||||| |||| | |||||  ||||||||||||||||||||| |||||||||||    
T  13706036 caacaaaaagcgttcacactcgtacaaactgaccaaaacacttcctgcatgagttaactcacacagatgttaaacccaacgtgacttatgtcacgttcgc 13706135  T
Q  191 ta 192  Q
    ||    
T  13706136 ta 13706137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 74 - 183
Target Start/End: Original strand, 13987326 - 13987434
Alignment:
Q  74 gaaaattgctctcctcacaacaaaaaatgttcactcccatacaaactgaccaaaataccatccacatgacttaagttacacatgtgttaaacccaacgtg 173  Q
    |||||||||||| ||| || |||||| || ||||| |||  ||||||  |||||||||   |||| | |||||||| || || |||||||||||||||||    
T  13987326 gaaaattgctcttctcccatcaaaaattgctcacttccaaccaaactttccaaaatactc-ccacgtaacttaagtcacgcaggtgttaaacccaacgtg 13987424  T
Q  174 acttaagtca 183  Q
    ||||||||||    
T  13987425 acttaagtca 13987434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 138 - 179
Target Start/End: Complemental strand, 16496296 - 16496255
Alignment:
Q  138 catgacttaagttacacatgtgttaaacccaacgtgacttaa 179  Q
    |||||||||||| |||||||||||||||| ||||||||||||    
T  16496296 catgacttaagtcacacatgtgttaaacctaacgtgacttaa 16496255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 74 - 132
Target Start/End: Original strand, 29795754 - 29795813
Alignment:
Q  74 gaaaattgctctcctcacaacaaaaaat-gttcactcccatacaaactgaccaaaatacc 132  Q
    |||||||||||| ||| ||||||||||  ||| |||| ||||||||||||||||||||||    
T  29795754 gaaaattgctcttctctcaacaaaaaaacgtttactctcatacaaactgaccaaaatacc 29795813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 74 - 132
Target Start/End: Complemental strand, 13706274 - 13706216
Alignment:
Q  74 gaaaattgctctcctcacaacaaaaaatgttcactcccatacaaactgaccaaaatacc 132  Q
    |||||||||||| ||  ||  |||||| ||||||||||||||||||| |||||||||||    
T  13706274 gaaaattgctcttctaccattaaaaaacgttcactcccatacaaactaaccaaaatacc 13706216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 74 - 192
Target Start/End: Complemental strand, 26310454 - 26310336
Alignment:
Q  74 gaaaattgctctcctcacaacaaaaaatgttcactcccatacaaactgaccaaaataccatccacatgacttaagttacacatgtgttaaacccaacgtg 173  Q
    |||||||||| | ||| ||||||||||   |||||  ||||||||||||  |||||| |   | ||||| |||| | ||||| |||||||||||||||||    
T  26310454 gaaaattgcttttctcccaacaaaaaacactcactttcatacaaactgataaaaatatctctcgcatgagttaattcacacaggtgttaaacccaacgtg 26310355  T
Q  174 acttaagtcacgttcgcta 192  Q
    |||||||||| ||||||||    
T  26310354 acttaagtcatgttcgcta 26310336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 137 - 187
Target Start/End: Complemental strand, 32121516 - 32121466
Alignment:
Q  137 acatgacttaagttacacatgtgttaaacccaacgtgacttaagtcacgtt 187  Q
    ||||||||||||||||||||||||||||  | |||||||||||||||||||    
T  32121516 acatgacttaagttacacatgtgttaaattcgacgtgacttaagtcacgtt 32121466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 73 - 130
Target Start/End: Complemental strand, 12828656 - 12828598
Alignment:
Q  73 agaaaattgctctcctcacaac-aaaaaatgttcactcccatacaaactgaccaaaata 130  Q
    |||||||| |||| ||| |||| ||||||||||||||| ||||||||||||||||||||    
T  12828656 agaaaatttctcttctcccaaccaaaaaatgttcactctcatacaaactgaccaaaata 12828598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 154 - 192
Target Start/End: Complemental strand, 20821900 - 20821862
Alignment:
Q  154 catgtgttaaacccaacgtgacttaagtcacgttcgcta 192  Q
    ||||||||||||||||||||| |||||||||||||||||    
T  20821900 catgtgttaaacccaacgtgaattaagtcacgttcgcta 20821862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 95 - 131
Target Start/End: Original strand, 26310235 - 26310271
Alignment:
Q  95 aaaaaatgttcactcccatacaaactgaccaaaatac 131  Q
    |||||||| ||||||||||||||||||||||||||||    
T  26310235 aaaaaatgctcactcccatacaaactgaccaaaatac 26310271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000001; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 140 - 205
Target Start/End: Original strand, 34448291 - 34448356
Alignment:
Q  140 tgacttaagttacacatgtgttaaacccaacgtgacttaagtcacgttcgctataatggtacatcc 205  Q
    |||||||||| || || |||||||||||||||  ||||||||||||||||||| | ||||||||||    
T  34448291 tgacttaagtcacgcaggtgttaaacccaacgcaacttaagtcacgttcgctacattggtacatcc 34448356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 74 - 130
Target Start/End: Original strand, 4974691 - 4974747
Alignment:
Q  74 gaaaattgctctcctcacaacaaaaaatgttcactcccatacaaactgaccaaaata 130  Q
    |||||||||||| |||  ||||||||| | ||||| |||||||||||||||||||||    
T  4974691 gaaaattgctcttctcttaacaaaaaacgctcacttccatacaaactgaccaaaata 4974747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 74 - 129
Target Start/End: Original strand, 5449485 - 5449541
Alignment:
Q  74 gaaaattgctctcctcacaacaaaaaat-gttcactcccatacaaactgaccaaaat 129  Q
    |||||||||||| |||  |||||||||  ||||||||||||||||||||||||||||    
T  5449485 gaaaattgctcttctccaaacaaaaaagcgttcactcccatacaaactgaccaaaat 5449541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 75 - 132
Target Start/End: Complemental strand, 34448526 - 34448469
Alignment:
Q  75 aaaattgctctcctcacaacaaaaaatgttcactcccatacaaactgaccaaaatacc 132  Q
    ||||||||||| |||  |||||||||   |||| ||||||||||||||||||||||||    
T  34448526 aaaattgctcttctccaaacaaaaaacactcacgcccatacaaactgaccaaaatacc 34448469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.00000007; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 104 - 149
Target Start/End: Original strand, 10291621 - 10291666
Alignment:
Q  104 tcactcccatacaaactgaccaaaataccatccacatgacttaagt 149  Q
    |||||||| ||||||||||| |||||||||  ||||||||||||||    
T  10291621 tcactcccgtacaaactgacgaaaataccactcacatgacttaagt 10291666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 73 - 130
Target Start/End: Original strand, 36752349 - 36752406
Alignment:
Q  73 agaaaattgctctcctcacaacaaaaaatgttcactcccatacaaactgaccaaaata 130  Q
    ||||||| ||||| |||||||| ||||||| ||| |||| ||||||||||| ||||||    
T  36752349 agaaaatcgctcttctcacaaccaaaaatgatcattcccttacaaactgacaaaaata 36752406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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