View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19045_low_6 (Length: 463)
Name: NF19045_low_6
Description: NF19045
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19045_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 271; Significance: 1e-151; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 13 - 359
Target Start/End: Original strand, 2817001 - 2817346
Alignment:
| Q |
13 |
aatataattgagagtgtatacctaatttttctcgttcaggaagattgtataataaatttcaagttgtattgtaaattctgaagtataagggacacaaaaa |
112 |
Q |
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| T |
2817001 |
aatataattgagagtgtatacataatttttctcgttcaggaagattgtataataaatttcaagttgtattgtaaattctgaagtataatgcacacaaaaa |
2817100 |
T |
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| Q |
113 |
atgtataccataaatttgaagttcatgatacgtcaagtgtataatatacatgtgtgtacccaaaaaataataatgaagagtaggtatgcaaaaattcaaa |
212 |
Q |
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| T |
2817101 |
atgtataccataaatttgaagttcatgatacgtcaagtgtataatatacatgtgtgtacccaaaaaataataatgaagagtaggtatgcaaaaattcaaa |
2817200 |
T |
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| Q |
213 |
tttagggtatgaagaatggaaatataggcatgcaatnnnnnnnnnnttgtttttataaaaataagaaatgatgaaggcttctctcnnnnnnngaaatgat |
312 |
Q |
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| T |
2817201 |
tttagggtatgaagaatggaaatataggcatgcaat-aaaaaaaaattgtttttataaaaataagaaatgatgaaggtttctctcaaaaaaagaaatgat |
2817299 |
T |
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| Q |
313 |
gaaggagtgcagttcgatttttggactagcggatgacataagttaat |
359 |
Q |
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| T |
2817300 |
gaaggagtgcagtccgatttttggactagcggatgacataagttaat |
2817346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 389 - 440
Target Start/End: Original strand, 2817348 - 2817399
Alignment:
| Q |
389 |
tgaataagatagttgatattagataaacatgtttaatgtgaatcatcatcat |
440 |
Q |
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| T |
2817348 |
tgaataagatagttgatattagataaacatgtttaatgtgaatcatcatcat |
2817399 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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