View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19045_low_8 (Length: 452)
Name: NF19045_low_8
Description: NF19045
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19045_low_8 |
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| [»] scaffold0643 (1 HSPs) |
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Alignment Details
Target: scaffold0643 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: scaffold0643
Description:
Target: scaffold0643; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 15 - 326
Target Start/End: Original strand, 8039 - 8348
Alignment:
| Q |
15 |
cagagatggggaatttgatttttctggtggtttttgttatctctgtcgtggactgtgctgtttgtgcggtttgtcctagttgctaaggtgctatgtggta |
114 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||| ||||||| |
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| T |
8039 |
cagagatggggaatttgatttttctggtggtttttgttatctctgtcgtggactgtgttgtttgtgcggtttgtcctagttgctaaggcgctctgtggta |
8138 |
T |
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| Q |
115 |
ctgcttgttttcttttcttcacctatggtgtccccttccttcgttgatacaaggaggggctgtttgctcactagcttatctcctatagctgctg-tttgt |
213 |
Q |
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|||||||||||||||||||||||| ||||||||||||| |||| ||||||||||||||||||||||||| |||||||||||||||||||||||| | |
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| T |
8139 |
ctgcttgttttcttttcttcacctgtggtgtccccttctttcgctgatacaaggaggggctgtttgctcgctagcttatctcctatagctgctgatacaa |
8238 |
T |
|
| Q |
214 |
ggtgtttttgctgttacggcgtgctgatttgttctttttgtaactagttcttttgtttattctaatagatactttcatctagtgagaacataatttgttg |
313 |
Q |
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|| | |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| || | ||||||||| ||||||||||||| |
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| T |
8239 |
ggag---gggctgttacggcgtgctgatttgttctttttgtaactagttcttttgtttattctgatagatagttgcttctagtgaggacataatttgttg |
8335 |
T |
|
| Q |
314 |
cttaagattctca |
326 |
Q |
| |
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||||||||||||| |
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| T |
8336 |
cttaagattctca |
8348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 159; Significance: 2e-84; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 15 - 336
Target Start/End: Complemental strand, 30014245 - 30013914
Alignment:
| Q |
15 |
cagagatggggaatttgatttttctggtggtttttgttatctctgtcgtggactgtgctgtttgtgcggtttgtcctagttgctaaggtgctatgtggta |
114 |
Q |
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| T |
30014245 |
cagagatggggaatttgatttttctagtggtttttgttatctctatcgtggactgtgttgtttgtgcggtttgtcctagtagct---gtgcggtttatct |
30014149 |
T |
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| Q |
115 |
ctg-cttgttttc---ttttcttcacctatggtgtccccttccttcgttgatacaaggaggggctgttt---------gctcactagcttatctcctata |
201 |
Q |
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||| | || || |||||||||||| ||||||||||||| |||| ||||||||||||||||||||| ||| ||||||||||||||||| |
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| T |
30014148 |
ctgtcgtgaatttgatttttcttcacctgtggtgtccccttctttcgctgatacaaggaggggctgtttccttgtgtggcttgctagcttatctcctata |
30014049 |
T |
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| Q |
202 |
gctgctgtttgtggtgtttttgctgttacggcgtgctgatttgttctttttgtaactagttcttttgtttattctaatagatactttcatctagtgagaa |
301 |
Q |
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||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||| | ||||||||||| | |
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| T |
30014048 |
gctgctgtttgtggtatttttgctgttacagcgtgctgatttgttctttttgtaactagttcttttgtttattctgatagatagctgcatctagtgagga |
30013949 |
T |
|
| Q |
302 |
cataatttgttgcttaagattctcatcagtaacta |
336 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |
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| T |
30013948 |
cataatttgttgcttaagattctcatcagtaacta |
30013914 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 332 - 435
Target Start/End: Complemental strand, 30073450 - 30073347
Alignment:
| Q |
332 |
aactagaagcaaactttctgtatttcataagtactatttcattgcaggtttcaatgttctgatttttgagaacacaacaatatttttcacagataacttt |
431 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||| ||| |
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| T |
30073450 |
aactagaagcaaactttctgtatttcataagtactatttcattgcaggtttcaatgttctgatttttgagaacacatcaatatttttcacaaataaattt |
30073351 |
T |
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| Q |
432 |
tgtt |
435 |
Q |
| |
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|||| |
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| T |
30073350 |
tgtt |
30073347 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 332 - 438
Target Start/End: Complemental strand, 30013865 - 30013759
Alignment:
| Q |
332 |
aactagaagcaaactttctgtatttcataagtactatttcattgcaggtttcaatgttctgatttttgagaacacaacaatatttttcacagataacttt |
431 |
Q |
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|||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
30013865 |
aactagaagcaaactttccgtatttcataagtactgtttcattgcaggtttcaatgttctgatttttgagaacacaacaatatttttcacaaataacttt |
30013766 |
T |
|
| Q |
432 |
tgtttct |
438 |
Q |
| |
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| ||||| |
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| T |
30013765 |
tatttct |
30013759 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 235 - 336
Target Start/End: Complemental strand, 30073599 - 30073498
Alignment:
| Q |
235 |
tgctgatttgttctttttgtaactagttcttttgtttattctaatagatactttcatctagtgagaacataatttgttgcttaagattctcatcagtaac |
334 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| ||| ||| | ||||||||||| | |||||||||||||||||||||||||||||||| |
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| T |
30073599 |
tgctgatttgttctttttgtaactagttcttttgtttattctgatatatagctgcatctagtgaggatataatttgttgcttaagattctcatcagtaac |
30073500 |
T |
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| Q |
335 |
ta |
336 |
Q |
| |
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|| |
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|
| T |
30073499 |
ta |
30073498 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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