View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19046_high_18 (Length: 265)
Name: NF19046_high_18
Description: NF19046
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19046_high_18 |
 | |
|
| [»] scaffold0060 (1 HSPs) |
| | |
|
| [»] scaffold0016 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 228; Significance: 1e-126; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 256
Target Start/End: Original strand, 21185196 - 21185450
Alignment:
| Q |
1 |
tgtcttgttctccatcctcctcagatttcttgctgttttatatgtctttggtgctgagaatttgtatatgttattctttaaaactttgaacttattcaat |
100 |
Q |
| |
|
||||||||||||||||||||||| |||||||| ||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
21185196 |
tgtcttgttctccatcctcctcatatttcttgttgttttatatgtctt-ggtgctgagaatttgtatatattattctttaaaactttgaacttattcaat |
21185294 |
T |
|
| Q |
101 |
tttttatgaatatgggatttgctgcataaaataatattttgaataagatgtctgagatgaaattgaacatcaagtcttagtatattaatattcatgatag |
200 |
Q |
| |
|
||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21185295 |
tttttataaatacgggatttgctgcataaaataatattttgaataagatgtctgagatgaaattgaacatcaagtcttagtatattaatattcatgatag |
21185394 |
T |
|
| Q |
201 |
cagagatatttggtggaaacaactccaaattgaaggtataccactcgaagtattat |
256 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21185395 |
cagagatatttggtggaaacaactccaaattgaaggtataccactcgaagtattat |
21185450 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 62 - 179
Target Start/End: Complemental strand, 21246066 - 21245945
Alignment:
| Q |
62 |
ttgtatatgttattctttaaaactttgaacttattcaattttttatgaatatgggatttgctgcataaaataa----tattttgaataagatgtctgaga |
157 |
Q |
| |
|
||||||| | |||||||||||||||||||||| || |||||| || || |||||||| |||||||| ||||| ||||| || || |||| ||||| |
|
|
| T |
21246066 |
ttgtataagctattctttaaaactttgaacttgttgaattttggattaacatgggattggctgcatagaataattgttatttataacaaaatgtatgaga |
21245967 |
T |
|
| Q |
158 |
tgaaattgaacatcaagtctta |
179 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
21245966 |
tgaaattgaacatcaagtctta |
21245945 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 54 - 103
Target Start/End: Original strand, 21221650 - 21221699
Alignment:
| Q |
54 |
ctgagaatttgtatatgttattctttaaaactttgaacttattcaatttt |
103 |
Q |
| |
|
||||||||||||||||| ||||||||| |||||||||||| ||||||||| |
|
|
| T |
21221650 |
ctgagaatttgtatatgctattctttacaactttgaacttgttcaatttt |
21221699 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 21268220 - 21268310
Alignment:
| Q |
1 |
tgtcttgttctccatcctcctcagatttcttgctgttttatatgtctttggtgctgagaatttgtatatgttattctttaaaactttgaactt |
93 |
Q |
| |
|
||||||||| | |||||| |||| |||||| ||| ||||||| ||||| ||||||| | ||||||||| |||||||||||||| ||||||| |
|
|
| T |
21268220 |
tgtcttgtttttcatcctgctcatatttctggctcttttataagtctt--gtgctgaataattgtatatgctattctttaaaactatgaactt |
21268310 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 51 - 103
Target Start/End: Original strand, 21217183 - 21217235
Alignment:
| Q |
51 |
gtgctgagaatttgtatatgttattctttaaaactttgaacttattcaatttt |
103 |
Q |
| |
|
||||||| |||||||||||| ||||||||| |||||||||||| || |||||| |
|
|
| T |
21217183 |
gtgctgaaaatttgtatatgctattctttagaactttgaacttgttaaatttt |
21217235 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 135 - 179
Target Start/End: Original strand, 21200707 - 21200751
Alignment:
| Q |
135 |
tattttgaataagatgtctgagatgaaattgaacatcaagtctta |
179 |
Q |
| |
|
||||| ||| || |||||| ||||||||||||||||||||||||| |
|
|
| T |
21200707 |
tatttagaacaaaatgtctaagatgaaattgaacatcaagtctta |
21200751 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 103
Target Start/End: Original strand, 21263514 - 21263595
Alignment:
| Q |
20 |
ctcagatttcttgctgttttatatgtctttggtgctgagaatttgtatatgttattctttaaaactttgaacttattcaatttt |
103 |
Q |
| |
|
|||| |||||| ||| |||||| |||||| ||||||| | ||||||||| |||||||||||||| | ||||| ||||||||| |
|
|
| T |
21263514 |
ctcatatttctagctcttttatgtgtctt--gtgctgaataattgtatatgctattctttaaaactataaacttgttcaatttt |
21263595 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0060 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0060
Description:
Target: scaffold0060; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 58 - 103
Target Start/End: Complemental strand, 10463 - 10418
Alignment:
| Q |
58 |
gaatttgtatatgttattctttaaaactttgaacttattcaatttt |
103 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||| ||||||||| |
|
|
| T |
10463 |
gaatttgtatatgctattctttaaaactttgaacttgttcaatttt |
10418 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0016
Description:
Target: scaffold0016; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 36 - 93
Target Start/End: Complemental strand, 67016 - 66960
Alignment:
| Q |
36 |
ttttatatgtctttggtgctgagaatttgtatatgttattctttaaaactttgaactt |
93 |
Q |
| |
|
||||||||||||| |||||| | |||||||||||| |||||||||||||||||||||| |
|
|
| T |
67016 |
ttttatatgtctt-ggtgcttaaaatttgtatatgctattctttaaaactttgaactt |
66960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 58 - 103
Target Start/End: Complemental strand, 21638456 - 21638411
Alignment:
| Q |
58 |
gaatttgtatatgttattctttaaaactttgaacttattcaatttt |
103 |
Q |
| |
|
|||| |||||||| ||||||||| |||||||||||| ||||||||| |
|
|
| T |
21638456 |
gaatctgtatatgctattctttagaactttgaacttgttcaatttt |
21638411 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University