View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19046_high_27 (Length: 239)
Name: NF19046_high_27
Description: NF19046
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19046_high_27 |
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Alignment Details
Target: chr4 (Bit Score: 170; Significance: 2e-91; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 20 - 232
Target Start/End: Complemental strand, 42118109 - 42117897
Alignment:
| Q |
20 |
tattgtgttgtttatgcaatttctcttgacttgagtgtggaataaacacaagttatcatcgctggctgtggttgttgttttctatatttgggtttatttc |
119 |
Q |
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| T |
42118109 |
tattgcgttgtttatgcaatttctcttgacttgagtgtggaataaacacgagttatcatcgctgcctgtggttgttgttttctatatttgggtttatttc |
42118010 |
T |
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| Q |
120 |
ataacttctactaattgataaagtaataatacattaaaagaatttgatagtgcttacaagctaactaagattctcct-ttataaatcttttcattagaac |
218 |
Q |
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|||| ||||||||||||||||||||||| | |||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
42118009 |
ataagttctactaattgataaagtaatacaatattaaaagaatttgatag-gcttacaagctaactaagattctcctattataaatcttttcattagaac |
42117911 |
T |
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| Q |
219 |
ttaaaatagaagtg |
232 |
Q |
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|||||||||||||| |
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| T |
42117910 |
ttaaaatagaagtg |
42117897 |
T |
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