View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19046_low_1 (Length: 531)

Name: NF19046_low_1
Description: NF19046
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19046_low_1
NF19046_low_1
[»] chr1 (4 HSPs)
chr1 (14-515)||(3780764-3781263)
chr1 (155-236)||(29267784-29267865)
chr1 (253-318)||(7062597-7062662)
chr1 (350-429)||(1945043-1945120)
[»] chr4 (5 HSPs)
chr4 (238-424)||(11042386-11042570)
chr4 (241-386)||(20349780-20349925)
chr4 (155-241)||(29284730-29284816)
chr4 (155-236)||(5486437-5486518)
chr4 (155-236)||(44820866-44820947)
[»] chr2 (1 HSPs)
chr2 (155-237)||(15696939-15697021)
[»] chr8 (2 HSPs)
chr8 (155-236)||(41287504-41287585)
chr8 (276-390)||(25004265-25004378)
[»] chr7 (7 HSPs)
chr7 (155-236)||(35445464-35445545)
chr7 (155-237)||(31589778-31589860)
chr7 (242-421)||(2091051-2091223)
chr7 (141-237)||(2619820-2619916)
chr7 (180-232)||(21859046-21859098)
chr7 (155-237)||(21236540-21236622)
chr7 (181-236)||(45884976-45885031)
[»] chr5 (4 HSPs)
chr5 (155-236)||(42885137-42885218)
chr5 (155-227)||(16666612-16666684)
chr5 (77-142)||(10098357-10098422)
chr5 (200-236)||(26502597-26502633)
[»] chr3 (3 HSPs)
chr3 (155-236)||(24735962-24736043)
chr3 (155-236)||(29839904-29839985)
chr3 (155-240)||(3857901-3857987)


Alignment Details
Target: chr1 (Bit Score: 442; Significance: 0; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 442; E-Value: 0
Query Start/End: Original strand, 14 - 515
Target Start/End: Original strand, 3780764 - 3781263
Alignment:
Q  14 tactcaatgtgggacttggatgactacctactttgagacgacatatcctcatttcttcttaagtctcacattttttcactttgtcatcaacttcattttc 113  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  3780764 tactcaatgtgggacttggatgactacctactttgagacgacatatcctcatttcttcttaa-tctcacattttttcactttgtcatcaacttcattttc 3780862  T
Q  114 agatagtcaaagatcattcttgtgactaatactcgtttattatacccgtttagctacccgtccatgcccgtgatggattttactcgcgggtacccatggg 213  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| |||||||||||||||||| ||| |    
T  3780863 agatagtcaaagatcattcttgtgactaatactcgtttattatacccgtttagctacccgcccgtgcccgtgatgaattttactcgcgggtacc-atgag 3780961  T
Q  214 catgtgtatttttgtcacccctattcattagtaatttacatgattgttttagacagtattatgtaccttgtacgattcagcttgtactttatcagatgta 313  Q
    |||||||||||||| || ||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||| ||||||||||| |||||    
T  3780962 catgtgtatttttgccatccctattcattagtaatttacatgattgttttagacgatattatgtaccttgtacgattcagctggtactttatcatatgta 3781061  T
Q  314 taagattgattagcctatgtattttcattcaagcaagaaattttgttgtaatttcaatgtatcaagtactttatgtttttaacactcatcaaaatattct 413  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3781062 taagattgattagcctatgtattttcattcaagcaaaaaattttgttgtaatttcaatgtatcaagtactttatgtttttaacactcatcaaaatattct 3781161  T
Q  414 agacaatttagaatggacattacattttcctccagagttgtttatttcgagatttttctagtttcgtttcaaaatttgggcttgatggctgctatttggg 513  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3781162 agacaatttagaatggacattacattttcctccagagttgtttatttcgagatttttctagtttcgtttcaaaatttgggcttgatggctgctatttggg 3781261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 155 - 236
Target Start/End: Complemental strand, 29267865 - 29267784
Alignment:
Q  155 atacccgtttagctacccgtccatgcccgtgatggattttactcgcgggtacccatgggcatgtgtatttttgtcaccccta 236  Q
    |||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||| ||||||||| ||||||||    
T  29267865 atacccgtttagctacccgtccgtgcccgtgatggattttacccgcgggtacccatgggcatgggtatttttgccaccccta 29267784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 253 - 318
Target Start/End: Complemental strand, 7062662 - 7062597
Alignment:
Q  253 atgattgttttagacagtattatgtaccttgtacgattcagcttgtactttatcagatgtataaga 318  Q
    |||||||||| | ||| || ||||||||||||| ||||||||| ||||||||| ||| ||||||||    
T  7062662 atgattgtttcaaacaataatatgtaccttgtatgattcagctggtactttattagaagtataaga 7062597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 350 - 429
Target Start/End: Original strand, 1945043 - 1945120
Alignment:
Q  350 gaaattttgttgtaatttcaatgtatcaagtactttatgtttttaacactcatcaaaatattctagacaatttagaatgg 429  Q
    |||||| |||| |||||| |||||||| |||||||||||  |||||||| |||  ||||||| |||||||||||| ||||    
T  1945043 gaaattctgttataattttaatgtatctagtactttatg--tttaacacccatttaaatattatagacaatttagtatgg 1945120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 84; Significance: 1e-39; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 238 - 424
Target Start/End: Original strand, 11042386 - 11042570
Alignment:
Q  238 tcattagtaatttacatgattgttttagacagtattatgtaccttgtacgattcagcttgtactttatcagatgtataagattgattagcctatgtattt 337  Q
    |||||||||||   ||||||||||| | || ||||||||||||||||| |||| |||| ||| |||||||||||||||||| || || ||| ||||||||    
T  11042386 tcattagtaatgcgcatgattgtttcaaacggtattatgtaccttgtaggatttagctagtagtttatcagatgtataagactgtttcgccaatgtattt 11042485  T
Q  338 tcattcaagcaagaaattttgttgtaatttcaatgtatcaagtactttatgtttttaacactcatcaaaatattctagacaatttag 424  Q
    |||||||||||||||||| ||||||||||| |||| ||| | |||||||||  ||||| |||| || |||||||||| |||||||||    
T  11042486 tcattcaagcaagaaattatgttgtaattttaatgcatctaatactttatg--tttaatactcgtctaaatattctaaacaatttag 11042570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 241 - 386
Target Start/End: Original strand, 20349780 - 20349925
Alignment:
Q  241 ttagtaatttacatgattgttttagacagtattatgtaccttgtacgattcagcttgtactttatcagatgtataagattgattagcctatgtattttca 340  Q
    ||||| || ||||||||||||| | || |||||||||||||||||||||| |||| ||||||||||||||| |||| | ||||||||| |||||||||||    
T  20349780 ttagtgatgtacatgattgtttcaaacggtattatgtaccttgtacgatttagctagtactttatcagatgaataaaactgattagccaatgtattttca 20349879  T
Q  341 ttcaagcaagaaattttgttgtaatttcaatgtatcaagtacttta 386  Q
    |||||| |||||||| | ||||||||| |||||||| |||||||||    
T  20349880 ttcaagtaagaaattatattgtaattttaatgtatctagtacttta 20349925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 155 - 241
Target Start/End: Complemental strand, 29284816 - 29284730
Alignment:
Q  155 atacccgtttagctacccgtccatgcccgtgatggattttactcgcgggtacccatgggcatgtgtatttttgtcacccctattcat 241  Q
    |||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||| ||||||||| |||||||| ||||    
T  29284816 atacccgtttagctacccgtccgtgcccgtgatggattttacccgcgggtacccatgggcatgggtatttttgccacccctaatcat 29284730  T

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Target: chr4; HSP #4
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 155 - 236
Target Start/End: Complemental strand, 5486518 - 5486437
Alignment:
Q  155 atacccgtttagctacccgtccatgcccgtgatggattttactcgcgggtacccatgggcatgtgtatttttgtcaccccta 236  Q
    |||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||  |||||||| ||||||||    
T  5486518 atacccgtttagctacccgtccgtgcccgtgatggattttacccgcgggtacccatgggcatggatatttttgccaccccta 5486437  T

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Target: chr4; HSP #5
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 155 - 236
Target Start/End: Original strand, 44820866 - 44820947
Alignment:
Q  155 atacccgtttagctacccgtccatgcccgtgatggattttactcgcgggtacccatgggcatgtgtatttttgtcaccccta 236  Q
    |||||||||||||||||||||| ||||||||||||||||||| |||||||| ||||||||||| ||||||||| ||||||||    
T  44820866 atacccgtttagctacccgtccgtgcccgtgatggattttacccgcgggtatccatgggcatgggtatttttgccaccccta 44820947  T

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Target: chr2 (Bit Score: 67; Significance: 2e-29; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 155 - 237
Target Start/End: Original strand, 15696939 - 15697021
Alignment:
Q  155 atacccgtttagctacccgtccatgcccgtgatggattttactcgcgggtacccatgggcatgtgtatttttgtcacccctat 237  Q
    |||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||| ||||||||| |||||||||    
T  15696939 atacccgtttagctacccgtccgtgcccgtgatggattttacccgcgggtacccatgggcatgggtatttttgccacccctat 15697021  T

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Target: chr8 (Bit Score: 66; Significance: 6e-29; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 155 - 236
Target Start/End: Complemental strand, 41287585 - 41287504
Alignment:
Q  155 atacccgtttagctacccgtccatgcccgtgatggattttactcgcgggtacccatgggcatgtgtatttttgtcaccccta 236  Q
    |||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||| ||||||||| ||||||||    
T  41287585 atacccgtttagctacccgtccgtgcccgtgatggattttacccgcgggtacccatgggcatgggtatttttgccaccccta 41287504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 276 - 390
Target Start/End: Original strand, 25004265 - 25004378
Alignment:
Q  276 gtaccttgtacgattcagcttgtactttatcagatgtataagattgattagcctatgtattttcattcaagcaagaaattttgttgtaatttcaatgtat 375  Q
    ||||||| ||||| ||||||  | ||||||| ||||||| | | || | ||||||||||||||  ||||||||||||||| | ||||||||| |||||||    
T  25004265 gtaccttatacgaatcagctaatgctttatcggatgtatgaaactgttgagcctatgtattttg-ttcaagcaagaaattctattgtaattttaatgtat 25004363  T
Q  376 caagtactttatgtt 390  Q
    | |||||||||||||    
T  25004364 ctagtactttatgtt 25004378  T

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Target: chr7 (Bit Score: 66; Significance: 6e-29; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 155 - 236
Target Start/End: Original strand, 35445464 - 35445545
Alignment:
Q  155 atacccgtttagctacccgtccatgcccgtgatggattttactcgcgggtacccatgggcatgtgtatttttgtcaccccta 236  Q
    |||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||| ||||||||| ||||||||    
T  35445464 atacccgtttagctacccgtccgtgcccgtgatggattttacccgcgggtacccatgggcatgggtatttttgccaccccta 35445545  T

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Target: chr7; HSP #2
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 155 - 237
Target Start/End: Complemental strand, 31589860 - 31589778
Alignment:
Q  155 atacccgtttagctacccgtccatgcccgtgatggattttactcgcgggtacccatgggcatgtgtatttttgtcacccctat 237  Q
    |||||||||||||||||||||| ||||||||||||||||||| | |||||| ||||||||||| ||||||||| |||||||||    
T  31589860 atacccgtttagctacccgtccgtgcccgtgatggattttacccacgggtatccatgggcatgggtatttttgccacccctat 31589778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 242 - 421
Target Start/End: Complemental strand, 2091223 - 2091051
Alignment:
Q  242 tagtaatttacatgattgttttagacagtattatgtaccttgtacgattcagcttgtact-ttatcagatgtataagattgattagcctatgtattttca 340  Q
    ||||||| ||||||||||| | | ||  ||||||||| |||||||| || |||| |||   |||| |||||||||||| | ||||||| |||||||        
T  2091223 tagtaatgtacatgattgtctcatacgatattatgtatcttgtacgtttgagctagtatacttattagatgtataagactaattagccaatgtatt---- 2091128  T
Q  341 ttcaagcaagaaattttgttgtaatttcaatgtatcaagtactttatgtttttaacactcatcaaaatattctagacaatt 421  Q
      |||||||||| || | ||||||||| |||||||  | |||||||| |||  ||||| |||| |||||||||||||||||    
T  2091127 --caagcaagaatttctattgtaattttaatgtatttaatactttatcttt--aacacccatctaaatattctagacaatt 2091051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 141 - 237
Target Start/End: Original strand, 2619820 - 2619916
Alignment:
Q  141 aatactcgtttattatacccgtttagctac-ccgtccatgcccgtgatggattttactcgcgggtacccatgggcatgtgtatttttgtcacccctat 237  Q
    ||||||||||||||||||| || ||||||| ||  || |||| |||| ||||||||| | |||||||||| ||||||| ||||||||| | |||||||    
T  2619820 aatactcgtttattataccggtgtagctacaccccccgtgcctgtgagggattttacccacgggtaccca-gggcatgggtatttttgccgcccctat 2619916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 180 - 232
Target Start/End: Complemental strand, 21859098 - 21859046
Alignment:
Q  180 cccgtgatggattttactcgcgggtacccatgggcatgtgtatttttgtcacc 232  Q
    ||||||||||||||||| | || |||||| |||||||||||||||||| ||||    
T  21859098 cccgtgatggattttacccacgagtacccgtgggcatgtgtatttttgccacc 21859046  T

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Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 155 - 237
Target Start/End: Complemental strand, 21236622 - 21236540
Alignment:
Q  155 atacccgtttagctacccgt-ccatgcccgtgatggattttactcgcgggtacccatgggcatgtgtatttttgtcacccctat 237  Q
    |||||||||||||||||| | || |||||||||  |||||||| | |||||| || |||||||| ||||||||| |||||||||    
T  21236622 atacccgtttagctacccatcccgtgcccgtga-cgattttacccacgggtatccgtgggcatgggtatttttgccacccctat 21236540  T

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Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 181 - 236
Target Start/End: Complemental strand, 45885031 - 45884976
Alignment:
Q  181 ccgtgatggattttactcgcgggtacccatgggcatgtgtatttttgtcaccccta 236  Q
    |||||| |||||||||  ||||| |||| |||||||| ||||||||||||||||||    
T  45885031 ccgtgacggattttacctgcgggcacccgtgggcatgggtatttttgtcaccccta 45884976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 66; Significance: 6e-29; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 155 - 236
Target Start/End: Complemental strand, 42885218 - 42885137
Alignment:
Q  155 atacccgtttagctacccgtccatgcccgtgatggattttactcgcgggtacccatgggcatgtgtatttttgtcaccccta 236  Q
    |||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||| ||||||||| ||||||||    
T  42885218 atacccgtttagctacccgtccgtgcccgtgatggattttacccgcgggtacccatgggcatgggtatttttgccaccccta 42885137  T

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Target: chr5; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 155 - 227
Target Start/End: Original strand, 16666612 - 16666684
Alignment:
Q  155 atacccgtttagctacccgtccatgcccgtgatggattttactcgcgggtacccatgggcatgtgtatttttg 227  Q
    |||||||||||||||||||||| | ||||||||||||||||| |||||||||||||||||||| |||||||||    
T  16666612 atacccgtttagctacccgtccgtacccgtgatggattttacccgcgggtacccatgggcatgggtatttttg 16666684  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 77 - 142
Target Start/End: Complemental strand, 10098422 - 10098357
Alignment:
Q  77 tctcacattttttcactttgtcatcaacttcattttcagatagtcaaagatcattcttgtgactaa 142  Q
    ||||||||||||| | ||||||||||||||||| |||| |||||  ||||| |||||  |||||||    
T  10098422 tctcacatttttttaatttgtcatcaacttcatcttcaaatagtacaagataattctcatgactaa 10098357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 200 - 236
Target Start/End: Complemental strand, 26502633 - 26502597
Alignment:
Q  200 cgggtacccatgggcatgtgtatttttgtcaccccta 236  Q
    ||||||||| |||||||||||||||||| ||||||||    
T  26502633 cgggtacccgtgggcatgtgtatttttgccaccccta 26502597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 66; Significance: 6e-29; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 155 - 236
Target Start/End: Original strand, 24735962 - 24736043
Alignment:
Q  155 atacccgtttagctacccgtccatgcccgtgatggattttactcgcgggtacccatgggcatgtgtatttttgtcaccccta 236  Q
    |||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||| ||||||||| ||||||||    
T  24735962 atacccgtttagctacccgtccgtgcccgtgatggattttacccgcgggtacccatgggcatgggtatttttgccaccccta 24736043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 155 - 236
Target Start/End: Original strand, 29839904 - 29839985
Alignment:
Q  155 atacccgtttagctacccgtccatgcccgtgatggattttactcgcgggtacccatgggcatgtgtatttttgtcaccccta 236  Q
    |||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||| ||||||||| ||||||||    
T  29839904 atacccgtttagctacccgtccgtgcccgtgatggattttacccgcgggtacccatgggcatgggtatttttgccaccccta 29839985  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 155 - 240
Target Start/End: Complemental strand, 3857987 - 3857901
Alignment:
Q  155 atacccgtttagctacccgtcca-tgcccgtgatggattttactcgcgggtacccatgggcatgtgtatttttgtcacccctattca 240  Q
    |||||||||| |||||||| ||  |||||||||||||| |||| | ||| ||||| |||||||  ||| ||||| ||||||||||||    
T  3857987 atacccgtttcgctacccgccccgtgcccgtgatggatattacccacggatacccgtgggcattggtacttttgccacccctattca 3857901  T

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