View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19046_low_10 (Length: 355)
Name: NF19046_low_10
Description: NF19046
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19046_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 302; Significance: 1e-170; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 20 - 329
Target Start/End: Complemental strand, 34709671 - 34709362
Alignment:
| Q |
20 |
gttataatggaagctctcttgaaattgttcctgaaatttgtagtgttagttcttgctattggaggtgctatggtaggcaatgtgcatggtcgattaccac |
119 |
Q |
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| T |
34709671 |
gttataatggaagctctcttgaaattgttcctgaaatttgtagtgttagttcttgctattggaggtgctatggtaggcaatgtgcatggtcgattaccac |
34709572 |
T |
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| Q |
120 |
tatgttgtccaattcctactttatgccaaccgagaacatgtgaacatcccccatgttgccgcgactctccacctgcttatttgaagccctaatactttgc |
219 |
Q |
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| T |
34709571 |
tatgttgtccaattcctactgtatgccaaccgagaacatgtgaacatcccccatgttgccgcgactctccacctgcttatttgaagccctaatactttgc |
34709472 |
T |
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| Q |
220 |
agcgtttttgttgtgataaaaccaatcatttatagtttggaaaagtctatctgatatgtaataatttcattaataagattggttaaattattatattttc |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34709471 |
agcgtttttgttgtgataaaaccaatcatttatagtttagaaaagtctatctgatatgtaataatttcattaataagattggttaaattattatattttc |
34709372 |
T |
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| Q |
320 |
ttattctcta |
329 |
Q |
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|||||||||| |
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| T |
34709371 |
ttattctcta |
34709362 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 259 - 303
Target Start/End: Complemental strand, 34697851 - 34697807
Alignment:
| Q |
259 |
gaaaagtctatctgatatgtaataatttcattaataagattggtt |
303 |
Q |
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| T |
34697851 |
gaaaagtctatctcatacctaataattacattaataagattggtt |
34697807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 274 - 322
Target Start/End: Original strand, 272028 - 272075
Alignment:
| Q |
274 |
tatgtaataatttcattaataagattggttaaattattatattttctta |
322 |
Q |
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| T |
272028 |
tatgtaataattacattaataaaattggttaaa-aattatattttctta |
272075 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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