View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19046_low_12 (Length: 336)
Name: NF19046_low_12
Description: NF19046
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19046_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 20 - 327
Target Start/End: Complemental strand, 693168 - 692863
Alignment:
| Q |
20 |
gttatctcattcattttcggggaatttaaggtatccaagaaagagaagctgtgtttcaagttgtccttcttcgatgagatcttcaccaagtcattctggt |
119 |
Q |
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| T |
693168 |
gttatctcattcattttcggggaatttaaggtattcaagaaagagaagctgtgtttcaagttgtccttcttcgatgagatcttcaccaagtcattctggt |
693069 |
T |
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| Q |
120 |
gttctttcacaaaagggtgttcttcttcgtggtgatcgagatgcttcttccatggaagagttgcagagtgctattcaaggtgctattactcattgcaaaa |
219 |
Q |
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| T |
693068 |
gttctttcacaaaagggtgttcttcttcgtggtgatcgagatgcttcttccatggaagagttgcagagtgctattcaaggtgctattactcattgcaaaa |
692969 |
T |
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| Q |
220 |
actctttgattacgaataaacatggggttagtagtaatcatgaaattaatctcatctaactgttttgtaatttgttcaattggtgtttcatttactcttt |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
692968 |
actctttgattacgaataaacatggggttagtagtaatcatgaaattaatctcatctaactg--ttgtaatttgttcaattggtgtttcatttactcttt |
692871 |
T |
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| Q |
320 |
agtataat |
327 |
Q |
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|||||||| |
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| T |
692870 |
agtataat |
692863 |
T |
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