View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19046_low_14 (Length: 311)
Name: NF19046_low_14
Description: NF19046
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19046_low_14 |
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Alignment Details
Target: chr1 (Bit Score: 115; Significance: 2e-58; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 166 - 280
Target Start/End: Original strand, 33251969 - 33252083
Alignment:
| Q |
166 |
atgcatttctcaaactcattaaccaacttgacatagagagattcatagtccttttcattgccaagatattcaaagatgctttgatcacatcctttggatt |
265 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33251969 |
atgcatttctcaaactcattaaccaacttgacatagagagattcatagtccttttcattgccaagatattcaaagatgctttgatcacatcctttggatt |
33252068 |
T |
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| Q |
266 |
tttgtagatattctt |
280 |
Q |
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||||||||||||||| |
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| T |
33252069 |
tttgtagatattctt |
33252083 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 166 - 280
Target Start/End: Original strand, 33272141 - 33272255
Alignment:
| Q |
166 |
atgcatttctcaaactcattaaccaacttgacatagagagattcatagtccttttcattgccaagatattcaaagatgctttgatcacatcctttggatt |
265 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33272141 |
atgcatttctcaaactcattaaccaacttgacatagagagattcatagtccttttcattgccaagatattcaaagatgctttgatcacatcctttggatt |
33272240 |
T |
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| Q |
266 |
tttgtagatattctt |
280 |
Q |
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||||||||||||||| |
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| T |
33272241 |
tttgtagatattctt |
33272255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 166 - 280
Target Start/End: Original strand, 33303770 - 33303884
Alignment:
| Q |
166 |
atgcatttctcaaactcattaaccaacttgacatagagagattcatagtccttttcattgccaagatattcaaagatgctttgatcacatcctttggatt |
265 |
Q |
| |
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|||||| |||| ||||||| |||||| || ||||||||||||||| |||| ||||||||| |||||||| || |||||||||| ||||| ||||||||| |
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| T |
33303770 |
atgcatctctcgaactcatcaaccaatttaacatagagagattcagagtcattttcattggcaagatatgcatagatgctttggtcacacgctttggatt |
33303869 |
T |
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| Q |
266 |
tttgtagatattctt |
280 |
Q |
| |
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||||||||||||||| |
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| T |
33303870 |
tttgtagatattctt |
33303884 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 22922070 - 22922023
Alignment:
| Q |
1 |
atcactctttgtacgataaaagtatgtggaataatatttggtatcttg |
48 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
22922070 |
atcactctttgtacgataaaagtatgtgcaataatatttggtatcttg |
22922023 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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