View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19046_low_15 (Length: 275)
Name: NF19046_low_15
Description: NF19046
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19046_low_15 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 139; Significance: 8e-73; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 15 - 188
Target Start/End: Original strand, 15584609 - 15584780
Alignment:
| Q |
15 |
aatgtacacactaaaatattctggataggatatatgaatatgtgatctaacaaaggtttcacactaaattaaaacatttagaccacactctgtttcttgt |
114 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||| ||||||| |
|
|
| T |
15584609 |
aatgtacacaccgaaatattctggataggatatatgaatatgtgatcaaacaaaggtttcacactaaattaatacatttagaccacactctggttcttgt |
15584708 |
T |
|
| Q |
115 |
ggtataagaaacatatatatcatatacacgtggcttaaacttaccatcaattacgtgttatatttccatttaaa |
188 |
Q |
| |
|
||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15584709 |
ggtttaagaa--atatatatcatatacacgtggcttaaacttaccatcaattacgtgttatatttccatttaaa |
15584780 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 28 - 193
Target Start/End: Original strand, 15581656 - 15581830
Alignment:
| Q |
28 |
aaatattctggataggatatatgaatatgtgatctaacaaaggtttcacactaaattaaaacatttaga-----------ccacactctgtttcttgtgg |
116 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||| | |||||||||||||||||| |
|
|
| T |
15581656 |
aaattttctggataggatatatgaatatgtgatcaaatgaaggtttcacactaaattaaaacatttagacttggtctcagctacactctgtttcttgtgg |
15581755 |
T |
|
| Q |
117 |
tataagaaacatatatatcatatacacgtggcttaaacttaccatcaattacgtgttatatttccatttaaactctt |
193 |
Q |
| |
|
| |||||| |||||||| ||||||| |||| |||||||||||||||||||||| ||||||||| | ||||||||| |
|
|
| T |
15581756 |
tttaagaa--atatatattatatacatgtggtataaacttaccatcaattacgtgatatatttccttgtaaactctt |
15581830 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 15 - 198
Target Start/End: Original strand, 15550135 - 15550301
Alignment:
| Q |
15 |
aatgtacacactaaaatattctggataggatatatgaatatgtgatctaacaaaggtttcacactaaattaaaacatttagaccacactctgtttcttgt |
114 |
Q |
| |
|
||||||||| | |||| ||||||||||||||||||||||||||||| ||| |||||||||||||||| || || ||||||||||||||| |
|
|
| T |
15550135 |
aatgtacacgccgaaattttctggataggatatatgaatatgtgatcaaacgaaggtttcacactaaaa------atgta-----cactctgtttcttgt |
15550223 |
T |
|
| Q |
115 |
ggtataagaaacatatatatcatatacacgtggcttaaacttaccatcaattacgtgttatatttccatttaaactcttgtgaa |
198 |
Q |
| |
|
||| |||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||| |||| |
|
|
| T |
15550224 |
ggttcaagaaa------tatcatatacacgtggcttaaacttaccatcaattacgtggtatatttccatttgaactcttatgaa |
15550301 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University