View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19046_low_28 (Length: 244)
Name: NF19046_low_28
Description: NF19046
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19046_low_28 |
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Alignment Details
Target: chr1 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 19641444 - 19641669
Alignment:
| Q |
1 |
tgtttaaacttttttaaacaataaaaaatttatacaacatataggtacaccttcttctgagaaggtccatttaacttgacacaatgtaagccataaaact |
100 |
Q |
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| T |
19641444 |
tgtttaaatttttttaaacaataaaaaatttatgcaacatataggtacaccttcttctgagaaggtccatttaacttgacacaatgtaatccataaaact |
19641543 |
T |
|
| Q |
101 |
ttgtcactagagcattttcaaatgctcgaaaatgattgtaataagcaggaagcattctcaagagagcctgcaaaataaaatcagcatgtccaaatcaata |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19641544 |
ttgtcactagagcattttcaaatgctcgaaaatgattgtaataagcaggaagcattctcaagagagcctgcaaaataaaatcagcatgtccaaatcaata |
19641643 |
T |
|
| Q |
201 |
ttatgctaataat-gtgtgtgccttg |
225 |
Q |
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||||||||||||| |||||||||||| |
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| T |
19641644 |
ttatgctaataatcgtgtgtgccttg |
19641669 |
T |
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