View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19046_low_29 (Length: 244)
Name: NF19046_low_29
Description: NF19046
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19046_low_29 |
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Alignment Details
Target: chr5 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 5906461 - 5906233
Alignment:
| Q |
1 |
gaaatgggttatagctaatacattctatgaatgggaagtagagggtgtgaaatcaatgtcctctttatctcccgtttacacagttggaccgttggtttcg |
100 |
Q |
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| T |
5906461 |
gaaatgggttatagctaatacagtctatgaatgggaagtagagggtgtgaaatcaatgtcctctttatctcccgtttacacagttggaccgttggtttcg |
5906362 |
T |
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| Q |
101 |
gattttatgattggaaaaaatgatgttagtaataataatatgattaacatgtggaatgttgaagattcatgtatcgattggctcgacaataagccaaatt |
200 |
Q |
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| T |
5906361 |
gattttatgatcggaaaaaatgatgttactaataataatatgattaacatgtggaatgttgaagattcatgtatcgattggctcgacaataagccaaatt |
5906262 |
T |
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| Q |
201 |
catctgttatttatattgcatttggtagt |
229 |
Q |
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| T |
5906261 |
catctgttatttatattgcatttggtagt |
5906233 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 149 - 229
Target Start/End: Original strand, 39491070 - 39491150
Alignment:
| Q |
149 |
atgtggaatgttgaagattcatgtatcgattggctcgacaataagccaaattcatctgttatttatattgcatttggtagt |
229 |
Q |
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| T |
39491070 |
atgtggaatgctgaagatgcatgcataggttggcttgataataaaccaaattcatcagttatttatatatcatttggtagt |
39491150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 149 - 229
Target Start/End: Complemental strand, 39287965 - 39287885
Alignment:
| Q |
149 |
atgtggaatgttgaagattcatgtatcgattggctcgacaataagccaaattcatctgttatttatattgcatttggtagt |
229 |
Q |
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|||||||||| |||||| |||| || | |||||| || ||||| ||||||||||| ||||||||||| ||||||||||| |
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| T |
39287965 |
atgtggaatgcagaagatgcatgcataggttggcttgataataaaccaaattcatcagttatttatatatcatttggtagt |
39287885 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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