View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19046_low_32 (Length: 238)
Name: NF19046_low_32
Description: NF19046
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19046_low_32 |
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Alignment Details
Target: chr7 (Bit Score: 156; Significance: 5e-83; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 21 - 188
Target Start/End: Complemental strand, 45037491 - 45037324
Alignment:
| Q |
21 |
aaatttattcacacaatcaataaatcaaaatatgcattccattacttaccgctgcacaatagtgaacaaccttgactttatgaagctcaacattttcagg |
120 |
Q |
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| T |
45037491 |
aaatttattcacacaatcaataaatcaaaatatgcattgcattacttaccgctgcacaatagtgaacaaccttgactttatgaagctcaacattttcagg |
45037392 |
T |
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| Q |
121 |
atgacgccataacatagcaagaacaagattgtaaaccaatgggattggcttataaatatccttgaaat |
188 |
Q |
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| T |
45037391 |
gtgacgccataacatagcaagaacaagattgtaaacaaatgggattggcttataaatatccttgaaat |
45037324 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 74 - 153
Target Start/End: Original strand, 45944023 - 45944102
Alignment:
| Q |
74 |
gcacaatagtgaacaaccttgactttatgaagctcaacattttcaggatgacgccataacatagcaagaacaagattgta |
153 |
Q |
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| T |
45944023 |
gcacaatagtgaacaacttgaactttctcaagctcaacattctcaggatgacgccacatcatggccaacacaagattgta |
45944102 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 64 - 156
Target Start/End: Complemental strand, 20395365 - 20395273
Alignment:
| Q |
64 |
acttaccgctgcacaatagtgaacaaccttgactttatgaagctcaacattttcaggatgacgccataacatagcaagaacaagattgtaaac |
156 |
Q |
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| T |
20395365 |
acttaccgctgcacagtaatgaacaactttgactttctcaagttcaacattctcaggatgacgccacaacatggccagcacaagattgtaaac |
20395273 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 67 - 174
Target Start/End: Original strand, 37686915 - 37687022
Alignment:
| Q |
67 |
taccgctgcacaatagtgaacaaccttgactttatgaagctcaacattttcaggatgacgccataacatagcaagaacaagattgtaaaccaatgggatt |
166 |
Q |
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| T |
37686915 |
taccgctgcacagtaatgaacaactttgactttctcaagttcaacattctcagggtgacgccacaacatggccaacacaagattataaacatttggaatt |
37687014 |
T |
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| Q |
167 |
ggcttata |
174 |
Q |
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|||||||| |
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| T |
37687015 |
ggcttata |
37687022 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 67 - 174
Target Start/End: Complemental strand, 37698603 - 37698496
Alignment:
| Q |
67 |
taccgctgcacaatagtgaacaaccttgactttatgaagctcaacattttcaggatgacgccataacatagcaagaacaagattgtaaaccaatgggatt |
166 |
Q |
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| T |
37698603 |
taccgctgcacagtaatgaacaactttgactttctcaagttcaacattctcagggtgacgccacaacatggccaacacaagattataaacatttggaatt |
37698504 |
T |
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| Q |
167 |
ggcttata |
174 |
Q |
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|||||||| |
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| T |
37698503 |
ggcttata |
37698496 |
T |
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