View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19046_low_35 (Length: 225)
Name: NF19046_low_35
Description: NF19046
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19046_low_35 |
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Alignment Details
Target: chr4 (Bit Score: 73; Significance: 2e-33; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 134 - 210
Target Start/End: Original strand, 9514538 - 9514614
Alignment:
| Q |
134 |
acaagttcacacttgagagttctcttgggcatagctagtttctccaagctcatttgcacaacattcaatgttatttt |
210 |
Q |
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| T |
9514538 |
acaagttcacacttaagagttctcttgggcatagctagtttctccaagctcatttgcacaacattcaatgttatttt |
9514614 |
T |
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Target: chr4; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 16 - 65
Target Start/End: Original strand, 9514420 - 9514469
Alignment:
| Q |
16 |
aatataaaagaaactgaaattgaataaaaattagcctaacatgcattccc |
65 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
9514420 |
aatataaaagaaactggaattgaataaaaattagcctaacatgcattccc |
9514469 |
T |
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