View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19046_low_41 (Length: 215)
Name: NF19046_low_41
Description: NF19046
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19046_low_41 |
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Alignment Details
Target: chr7 (Bit Score: 141; Significance: 4e-74; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 14 - 162
Target Start/End: Original strand, 36134856 - 36135004
Alignment:
| Q |
14 |
attatactaaattgattccatatacaaaaatgaaaccaatatatactatgagcagtagtggatattaattgtagttttcttttcttgacggtttcaaatt |
113 |
Q |
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| T |
36134856 |
attatattaaattgattccatatacaaaaatgaaaccaatatatactatgagcagtagtggatattaattgtagttttcttttcttgacggtttcaaatt |
36134955 |
T |
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| Q |
114 |
aattttttattattggtaaacagttgaaactgagaaattccactctgag |
162 |
Q |
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| T |
36134956 |
aattttttattattggtaaacagttgaaactgagaaattcctctctgag |
36135004 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 162 - 194
Target Start/End: Original strand, 36135038 - 36135070
Alignment:
| Q |
162 |
gaaaatgatttgatcgagcacaagggaaagctt |
194 |
Q |
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| T |
36135038 |
gaaaatgatttgatcgagcacaagggaaagctt |
36135070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 63; Significance: 1e-27; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 14 - 162
Target Start/End: Original strand, 30815043 - 30815193
Alignment:
| Q |
14 |
attatactaaattgattccatatacaaaaatgaaaccaatatatactatgagcagtagtggatattaattgtag-ttttcttttcttgacggtttcaaat |
112 |
Q |
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| T |
30815043 |
attatattaaattgattccatatgcacaaatggagccaatatattctacgagcagtagtggagattaattgtagtttttctttgtttgtcaaattcaaat |
30815142 |
T |
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| Q |
113 |
t-aattttttattattggtaaacagttgaaactgagaaattccactctgag |
162 |
Q |
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| T |
30815143 |
tgttttttttattattggcaaacagttgaaactgagaaattccgctctgag |
30815193 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 162 - 194
Target Start/End: Original strand, 30815227 - 30815259
Alignment:
| Q |
162 |
gaaaatgatttgatcgagcacaagggaaagctt |
194 |
Q |
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||||| ||||||||||||||||||||||||||| |
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| T |
30815227 |
gaaaaagatttgatcgagcacaagggaaagctt |
30815259 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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