View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19046_low_5 (Length: 407)
Name: NF19046_low_5
Description: NF19046
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19046_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 234; Significance: 1e-129; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 259
Target Start/End: Complemental strand, 36134885 - 36134619
Alignment:
| Q |
1 |
tttttgtatatggaatcaatttaatataatttagacaggctgatgaagtagaaaaacagatttttaggggataagttagcagcttagttcaaaatgaagg |
100 |
Q |
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| T |
36134885 |
tttttgtatatggaatcaatttaatataatttagacaggctgatgaagtagaaaaacagatttttaggggataagttagcagcttagttcaaaatgaagg |
36134786 |
T |
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| Q |
101 |
a--------ggttgaagtacttccacggcatagaggttgtctactctaggaaatttatcttcatctttcataggaaatatgtcctggatctttataagaa |
192 |
Q |
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| T |
36134785 |
accacaggaggttgaagtacttccacggcatagaggttgtctactcttggaaatttatcttcatctttcataggaaatatgtcctggatctttataagaa |
36134686 |
T |
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| Q |
193 |
gataagttgagttgcaaaacaactggtgttcccacagagcataatcaccaaatggaaaaagatgggg |
259 |
Q |
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| T |
36134685 |
gataagttgagttgcaaaacaactggtgttcccacagagcataatcaccaaatggaaaaagatgggg |
36134619 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 321 - 382
Target Start/End: Original strand, 36133070 - 36133131
Alignment:
| Q |
321 |
ttgaaacaggatgtgaagaatgaagcagaagcgtacatgcttaaagagttatctctcttaaa |
382 |
Q |
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| T |
36133070 |
ttgaaacaggatgtgaagaatgaagcagaagcgtacatgcttaaagagttatctctcttaaa |
36133131 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 72; Significance: 1e-32; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 8 - 124
Target Start/End: Complemental strand, 30815065 - 30814942
Alignment:
| Q |
8 |
atatggaatcaatttaatataatttagacaggctgatgaagtagaaaaacagatttttaggggataagttagcagcttagttcaaaatga--------ag |
99 |
Q |
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| T |
30815065 |
atatggaatcaatttaatataatttggacaggctgatgaagaagaaaaacagattttga-gggataagttggcagcttagttcaaaatgaaggaccgcag |
30814967 |
T |
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| Q |
100 |
gaggttgaagtacttccacggcata |
124 |
Q |
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| T |
30814966 |
gaggttgaagtacttccacggcata |
30814942 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 321 - 376
Target Start/End: Original strand, 30813423 - 30813478
Alignment:
| Q |
321 |
ttgaaacaggatgtgaagaatgaagcagaagcgtacatgcttaaagagttatctct |
376 |
Q |
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| T |
30813423 |
ttgaaacaggatgtgaagaatgaagcagaagcatacatgctcaaagagttatctct |
30813478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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