View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19046_low_8 (Length: 370)
Name: NF19046_low_8
Description: NF19046
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19046_low_8 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 345; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 1 - 357
Target Start/End: Complemental strand, 10011124 - 10010768
Alignment:
| Q |
1 |
cttcttctttgtttaaaggaaagtgtgtattgaaagcatacagacaatggaaggagagaacttggtgttaaaaggaaagtagttgctgcatgtgcatgga |
100 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10011124 |
cttcttttttgtttaaaggaaagtgtgtattgaaagcatacagacaatggaaggagagaacttggtgttaaaaggaaagtagttgctgcatgtgcatgga |
10011025 |
T |
|
| Q |
101 |
aggtgttcgttttgtttacacctgttcttatttgtttatcttttgtttacatattttcctaggttcaacaggttttaaaattgtttctctgaatattaga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10011024 |
aggtgttcgttttgtttacacctgttcttatttggttatcttttgtttacatattttcctaggttcaacaggttttaaaattgtttctctgaatattaga |
10010925 |
T |
|
| Q |
201 |
gtatctgagcgttgtgcgtgacggctgttgtcagggagaacggaaagtttggatttagtgtcagtggttgctaattacgttctttaatttgttgatttaa |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10010924 |
gtatctgagcgttgtgcgtgacggctgttgtcagtgagaacggaaagtttggatttagtgtcagtggttgctaattacgttctttaatttgttgatttaa |
10010825 |
T |
|
| Q |
301 |
tttatgatgttgccatgagtctaatctaatgacattcaagtttgcttgaatatggtg |
357 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10010824 |
tttatgatgttgccatgagtctaatctaatgacattcaagtttgcttgaatatggtg |
10010768 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 8 - 71
Target Start/End: Complemental strand, 561487 - 561424
Alignment:
| Q |
8 |
tttgtttaaaggaaagtgtgtattgaaagcatacagacaatggaaggagagaacttggtgttaa |
71 |
Q |
| |
|
||||||||||||||||||| || |||||||||||| ||||| ||| |||||||||||||||||| |
|
|
| T |
561487 |
tttgtttaaaggaaagtgtctaatgaaagcatacatacaattgaatgagagaacttggtgttaa |
561424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 2 - 69
Target Start/End: Original strand, 17688937 - 17689007
Alignment:
| Q |
2 |
ttcttctttgtttaaaggaaagtgtgtattgaaagcatacagacaatgg---aaggagagaacttggtgtt |
69 |
Q |
| |
|
||||| ||||||||||||||||||| || |||||||||||| ||||| | || |||||||||||||||| |
|
|
| T |
17688937 |
ttcttttttgtttaaaggaaagtgtctaatgaaagcatacatacaattgaataatgagagaacttggtgtt |
17689007 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 2 - 48
Target Start/End: Complemental strand, 1678795 - 1678749
Alignment:
| Q |
2 |
ttcttctttgtttaaaggaaagtgtgtattgaaagcatacagacaat |
48 |
Q |
| |
|
||||| ||||||||||||||||||| || |||||||||||| ||||| |
|
|
| T |
1678795 |
ttcttttttgtttaaaggaaagtgtctaatgaaagcatacatacaat |
1678749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 8 - 48
Target Start/End: Complemental strand, 4778852 - 4778812
Alignment:
| Q |
8 |
tttgtttaaaggaaagtgtgtattgaaagcatacagacaat |
48 |
Q |
| |
|
||||||||||||||||||| || |||||||||||| ||||| |
|
|
| T |
4778852 |
tttgtttaaaggaaagtgtctaatgaaagcatacatacaat |
4778812 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University