View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19047_high_1 (Length: 1334)
Name: NF19047_high_1
Description: NF19047
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19047_high_1 |
 | |
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Alignment Details
Target: chr7 (Bit Score: 1053; Significance: 0; HSPs: 8)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 1053; E-Value: 0
Query Start/End: Original strand, 20 - 1137
Target Start/End: Complemental strand, 35449108 - 35447991
Alignment:
| Q |
20 |
tggatcaccatttcgtatggttgatatgtctgctcatggagatttttcaagcatgcattatagtcagaactcgaacatgggttttcaacaaggaattaat |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35449108 |
tggatcaccatttcgtatggttgatatgtctgctcatggagatttttcaagcatgcattatagtcagaactcgaacatgggttttcaacaaggaattaat |
35449009 |
T |
|
| Q |
120 |
ggggggatggccataacagaacctgaatatccaagttcttctcctagcatgtttggtgttgatgaaaatgtcatggagacctgcccaattgtcaggaatg |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
35449008 |
ggggggatggccataacagaacctgaatatccaagttcttctcctagcatgtttggtgttgatgaaaatgtcatggagacctgcccaattgtcaggaatg |
35448909 |
T |
|
| Q |
220 |
catcagctatgccaatctataataatggtggatcatcatttcgtatggttgagatgtctgctcacggagatattttaagcatgcatcatagtcagaactc |
319 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
35448908 |
catcagctatgccaatctatagtaatggtggatcatcatttcatatggttgagatgtctgctcacggagatattttaagcatgcatcatagtcagaactc |
35448809 |
T |
|
| Q |
320 |
aaacatggatttgcagcaaggagttaatgggcagatggccatagtacaacctgaatattcaagttttcctcacatgtctggtgctgatagaaatgccgtg |
419 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
35448808 |
aaacatggatttgcagcaaggagttaatgggcagatggccatagtacaacctgaatattcaagttttcctcacatgtctggtgctgatagaaatgccgtg |
35448709 |
T |
|
| Q |
420 |
gagaccggctcaaatgtccgcgatgcttcagctatgccaatctctggtgtcgagtccaactcagattctgacaatgaagcagttatggattttctaaaca |
519 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35448708 |
gagaccggctcaaatgtccgcgatgcttcagctatgccaatctctggtatcgagtccaactcagattctgacaatgaagcagttatggattttctaaaca |
35448609 |
T |
|
| Q |
520 |
tttgttctagctttccggatcttgtttctctgttttctggtatgtcctctctcttgtgtttctgtgggtcaatgtgcgcgtttaaataaaatgttcaaag |
619 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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|
| T |
35448608 |
cttgttctagctttccggatcttgtttctctgttttctggtatgtcctctctcttgtgtttctgtgggtcaatgtgcatgtttaaataaaatgttcaaag |
35448509 |
T |
|
| Q |
620 |
cttattttggattaatcataaccagtactgattctcatctccttgtttaacaggtgaacctgacgacgatccttttggtctttataacattcctgaaact |
719 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
35448508 |
cttagtttggattaatcataaccagtactgattctcatctccttgtttaacaggtgaacctgacgacgatccttttggtctttataacattcctgaaact |
35448409 |
T |
|
| Q |
720 |
cctgatatgctgacttccaaagtcaatagttgacggtctttgatcatcattaacttaggtatgttctttacttctattgttaggaccaaattaggaagcc |
819 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35448408 |
cctgatatgctgacttctaaagtcaatagttgacggtctttgatcatcattaacttaggtatgttctttacttctattgttaggaccaaattaggaagcc |
35448309 |
T |
|
| Q |
820 |
acttgcatgatatatgtgttgctatggttcttctattattactatagcatggtttgtagctttggtaacttgtattggtataatcatgtagagtgcaatt |
919 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35448308 |
acttgcatgatatatgtgttgctatggttcttctattattactatagcatggtttgtagctttggtaacttgtattggtataatcatgtagagtgcaatt |
35448209 |
T |
|
| Q |
920 |
taagctacctgagtttttaattagtttttactacatgaacgaannnnnnnaattgtttatcttggctgcaggtttaacaaaatgctagaacagtgttgta |
1019 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35448208 |
taagctacgtgagtttttaattagtttttactacatgcacgaatttttttaattgtttatcttggctgcaggtttaacaaaatgctagaacagtgttgta |
35448109 |
T |
|
| Q |
1020 |
cataaaaccataactcatggatgaacacatgctttgatattttaatagtttgctacctccaagtgaagacaatgtaatttgaacacttccgtgtgatggt |
1119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35448108 |
cataaaaccataactcatggatgaacacatgctttgatattttaatagtttgctacctccaagtgaagacaatgtaatttgaacacttccgtgtgatggt |
35448009 |
T |
|
| Q |
1120 |
gtagatgattatgggata |
1137 |
Q |
| |
|
|||| ||||||||||||| |
|
|
| T |
35448008 |
gtaggtgattatgggata |
35447991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 20 - 462
Target Start/End: Complemental strand, 35449339 - 35448891
Alignment:
| Q |
20 |
tggatcaccatttcgtatggttgatatgtctgctcatggagatttttcaagcatgcattatagtcagaactcgaacatgggttttcaacaaggaattaat |
119 |
Q |
| |
|
||||||| | ||| |||||||||| |||||||||| ||||||| ||||| ||||||||||||||||||| |||||||||| |||||||||||||||||| |
|
|
| T |
35449339 |
tggatcatcgtttggtatggttgacgtgtctgctcaaggagattgttcaaccatgcattatagtcagaacacgaacatgggctttcaacaaggaattaat |
35449240 |
T |
|
| Q |
120 |
ggggggatggccataacagaacctgaatatccaagttcttctcctagcatgtttggtgttgatgaaaatgtcatggagacctgcccaattgtcaggaatg |
219 |
Q |
| |
|
| ||| || |||||| |||||||||||||||||||||||||| || ||||||||||| |||||||||||||| ||||| |||||||||||||| | ||| |
|
|
| T |
35449239 |
gagggaatagccatatcagaacctgaatatccaagttcttctactcgcatgtttggtattgatgaaaatgtcctggaggcctgcccaattgtcggcaata |
35449140 |
T |
|
| Q |
220 |
catcagctatgccaatctataataatgg---tggatcatcatttcgtatggttgagatgtctgctcacggagatattttaagcatgcatcatagtcagaa |
316 |
Q |
| |
|
||||||||| |||||||| |||||| || ||||||| |||||||||||||||| ||||||||||| |||||| ||| |||||||||| |||||||||| |
|
|
| T |
35449139 |
catcagctacgccaatctttaataacggtactggatcaccatttcgtatggttgatatgtctgctcatggagatttttcaagcatgcattatagtcagaa |
35449040 |
T |
|
| Q |
317 |
ctcaaacatggatttgcagcaaggagttaatgggcagatggccatagtacaacctgaatattcaag---ttttcctcacatgtctggtgctgatagaaat |
413 |
Q |
| |
|
||| ||||||| ||| || |||||| |||||||| |||||||||| | ||||||||||| |||| || |||| ||||| ||||| |||| |||| |
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|
| T |
35449039 |
ctcgaacatgggttttcaacaaggaattaatggggggatggccataacagaacctgaatatccaagttcttctcctagcatgtttggtgttgatgaaaat |
35448940 |
T |
|
| Q |
414 |
gccgtggagaccggctcaaatgtccgcgatgcttcagctatgccaatct |
462 |
Q |
| |
|
| | |||||||| || ||| |||| | |||| |||||||||||||||| |
|
|
| T |
35448939 |
gtcatggagacctgcccaattgtcaggaatgcatcagctatgccaatct |
35448891 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 93; E-Value: 1e-44
Query Start/End: Original strand, 1238 - 1334
Target Start/End: Complemental strand, 35447890 - 35447794
Alignment:
| Q |
1238 |
tccatattccataactttattagtatagtactcaaaatctaatcatttgatgtcatgtttctttatatatattatccatcaaagtattctcctttac |
1334 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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|
| T |
35447890 |
tccatattccataactttattagtatagtactcaaaatctaatcatttgatgtcatgttactttatatatattatccatcaaagtattctcctttac |
35447794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 63; E-Value: 1e-26
Query Start/End: Original strand, 21 - 183
Target Start/End: Complemental strand, 35441087 - 35440925
Alignment:
| Q |
21 |
ggatcaccatttcgtatggttgatatgtctgctcatggagatttttcaagcatgcattatagtcagaactcgaacatgggttttcaacaaggaattaatg |
120 |
Q |
| |
|
|||||| ||||| |||||||||||| |||||||||||||||| || |||||||| || || ||||||||| ||||||||| | ||||||||| |||||| |
|
|
| T |
35441087 |
ggatcatcatttggtatggttgatacgtctgctcatggagatattccaagcatgacttttactcagaactcaaacatgggtatgcaacaaggagttaatg |
35440988 |
T |
|
| Q |
121 |
gggggatggccataacagaacctgaatatccaagttcttctcctagcatgtttggtgttgatg |
183 |
Q |
| |
|
|||| ||| ||||| | ||||||| || |||||| ||||||| ||||||||||| ||||| |
|
|
| T |
35440987 |
ggggaatgaccatatccaaacctgataattcaagtttttctcctcacatgtttggtgctgatg |
35440925 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 249 - 412
Target Start/End: Complemental strand, 35441087 - 35440921
Alignment:
| Q |
249 |
ggatcatcatttcgtatggttgagatgtctgctcacggagatattttaagcatgcatcatagtcagaactcaaacatggatttgcagcaaggagttaatg |
348 |
Q |
| |
|
|||||||||||| |||||||||| | ||||||||| ||||||||| ||||||| | || ||||||||||||||||| | |||| ||||||||||||| |
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|
| T |
35441087 |
ggatcatcatttggtatggttgatacgtctgctcatggagatattccaagcatgacttttactcagaactcaaacatgggtatgcaacaaggagttaatg |
35440988 |
T |
|
| Q |
349 |
ggcagatggccatagtacaacctgaatattcaagttt---tcctcacatgtctggtgctgatagaaa |
412 |
Q |
| |
|
|| ||| ||||| ||||||| |||||||||| ||||||||||| |||||||||| |||| |
|
|
| T |
35440987 |
ggggaatgaccatatccaaacctgataattcaagtttttctcctcacatgtttggtgctgatggaaa |
35440921 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 240 - 348
Target Start/End: Complemental strand, 35449347 - 35449239
Alignment:
| Q |
240 |
aataatggtggatcatcatttcgtatggttgagatgtctgctcacggagatattttaagcatgcatcatagtcagaactcaaacatggatttgcagcaag |
339 |
Q |
| |
|
||||||||||||||||| ||| |||||||||| |||||||||| |||||| || || ||||||| ||||||||||| | ||||||| || || |||| |
|
|
| T |
35449347 |
aataatggtggatcatcgtttggtatggttgacgtgtctgctcaaggagattgttcaaccatgcattatagtcagaacacgaacatgggctttcaacaag |
35449248 |
T |
|
| Q |
340 |
gagttaatg |
348 |
Q |
| |
|
|| |||||| |
|
|
| T |
35449247 |
gaattaatg |
35449239 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 42 - 190
Target Start/End: Complemental strand, 35440850 - 35440702
Alignment:
| Q |
42 |
gatatgtctgctcatggagatttttcaagcatgcattatagtcagaactcgaacatgggttttcaacaaggaattaatggggggatggccataacagaac |
141 |
Q |
| |
|
||||||| || ||| |||||| || |||||||| ||||| ||| ||| | ||||||||| | ||||||||||| ||||| |||||| || | || ||| |
|
|
| T |
35440850 |
gatatgtttgttcaaggagatattccaagcatggcttatactcataacacaaacatgggtgtgcaacaaggaatcaatggtgggatgaacacatcaaaac |
35440751 |
T |
|
| Q |
142 |
ctgaatatccaagttcttctcctagcatgtttggtgttgatgaaaatgt |
190 |
Q |
| |
|
||| |||| |||||| ||||||| ||||||||||| | ||| |||||| |
|
|
| T |
35440750 |
ctggatattcaagttattctcctcacatgtttggtgctcatggaaatgt |
35440702 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 28 - 73
Target Start/End: Complemental strand, 35454565 - 35454520
Alignment:
| Q |
28 |
catttcgtatggttgatatgtctgctcatggagatttttcaagcat |
73 |
Q |
| |
|
||||| |||||||||||| |||||||||||||||| |||||||||| |
|
|
| T |
35454565 |
catttggtatggttgataagtctgctcatggagatatttcaagcat |
35454520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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