View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19047_high_13 (Length: 251)
Name: NF19047_high_13
Description: NF19047
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19047_high_13 |
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Alignment Details
Target: chr1 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 12518389 - 12518625
Alignment:
| Q |
1 |
cgacatcgcaaatgcgatataaagttttgtagcgtaactggaacagcaatctaatacactatgacttaccgactggagaaactctccccaggagaagcag |
100 |
Q |
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| T |
12518389 |
cgacatcgcaactgcgatataaagttttgtagcgtaactggaacagcaatctaatacactatgatgtaccgactggagaaactctccccaggagaagcag |
12518488 |
T |
|
| Q |
101 |
gatgtgccaaattcctcagcttccttcttttgtgtggtagaaacatttccaaagctcacaatagctacaatattaatttacaaagttgtcaacattaaat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | |
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| T |
12518489 |
gatgtgccaaattcctcagcttccttcttttgtgtggtagaaacatttccaaagcttacaatagctacaatattaatttacaaagttgtcaacattaatt |
12518588 |
T |
|
| Q |
201 |
agaggaacaaacaaataaaccttaatctggactgaga |
237 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| |
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| T |
12518589 |
agaggaacaaacaaataaaccttaatctggactgaga |
12518625 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 67 - 167
Target Start/End: Original strand, 25748497 - 25748597
Alignment:
| Q |
67 |
taccgactggagaaactctccccaggagaagcaggatgtgccaaattcctcagcttccttcttttgtgtggtagaaacatttccaaagctcacaatagct |
166 |
Q |
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|||| |||| ||||||||| |||| ||||||||||||| |||| ||||||| |||| |||||||||||||| |||||||| ||||| |||||||||||| |
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| T |
25748497 |
taccaactgaagaaactcttcccatgagaagcaggatgcaccaagttcctcaacttctttcttttgtgtggttgaaacattcccaaaactcacaatagct |
25748596 |
T |
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| Q |
167 |
a |
167 |
Q |
| |
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| |
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| T |
25748597 |
a |
25748597 |
T |
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