View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19047_low_11 (Length: 261)

Name: NF19047_low_11
Description: NF19047
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19047_low_11
NF19047_low_11
[»] chr8 (10 HSPs)
chr8 (16-250)||(7321477-7321710)
chr8 (23-250)||(29757602-29757830)
chr8 (23-250)||(29771752-29771979)
chr8 (94-250)||(19008097-19008252)
chr8 (134-247)||(18528145-18528258)
chr8 (134-247)||(28800877-28800990)
chr8 (91-192)||(18565067-18565165)
chr8 (101-167)||(23521116-23521181)
chr8 (91-155)||(24308893-24308960)
chr8 (101-166)||(26576508-26576572)
[»] chr1 (13 HSPs)
chr1 (107-250)||(31584374-31584517)
chr1 (24-241)||(25791520-25791738)
chr1 (91-250)||(15440595-15440746)
chr1 (146-242)||(41029232-41029328)
chr1 (130-250)||(16636981-16637101)
chr1 (24-242)||(14580718-14580936)
chr1 (174-250)||(34187881-34187957)
chr1 (73-166)||(17316524-17316617)
chr1 (91-195)||(12397699-12397805)
chr1 (103-167)||(17496785-17496850)
chr1 (103-166)||(30805983-30806047)
chr1 (91-152)||(26897941-26898004)
chr1 (91-152)||(33438813-33438876)
[»] chr3 (8 HSPs)
chr3 (23-250)||(8109539-8109766)
chr3 (91-250)||(17034508-17034667)
chr3 (102-166)||(19905645-19905708)
chr3 (91-173)||(19307068-19307152)
chr3 (173-250)||(27406005-27406082)
chr3 (91-161)||(5699788-5699858)
chr3 (134-250)||(5638771-5638887)
chr3 (101-166)||(13291831-13291897)
[»] chr6 (9 HSPs)
chr6 (91-247)||(6561056-6561212)
chr6 (156-241)||(11130809-11130895)
chr6 (91-250)||(17291451-17291610)
chr6 (91-195)||(29031880-29031983)
chr6 (91-167)||(10814926-10815003)
chr6 (88-155)||(10821010-10821079)
chr6 (73-167)||(4312245-4312339)
chr6 (103-152)||(19490838-19490889)
chr6 (103-155)||(21746959-21747011)
[»] chr7 (5 HSPs)
chr7 (101-250)||(8259273-8259422)
chr7 (91-166)||(17891497-17891573)
chr7 (185-250)||(4031519-4031584)
chr7 (185-250)||(24865386-24865451)
chr7 (101-167)||(27707462-27707529)
[»] chr5 (8 HSPs)
chr5 (91-240)||(19642072-19642221)
chr5 (91-242)||(31730435-31730586)
chr5 (120-246)||(20690016-20690142)
chr5 (91-250)||(25936276-25936434)
chr5 (118-239)||(17338135-17338256)
chr5 (137-246)||(19692420-19692529)
chr5 (94-167)||(26013611-26013685)
chr5 (91-167)||(37336518-37336595)
[»] chr4 (4 HSPs)
chr4 (91-213)||(20245262-20245383)
chr4 (103-155)||(18445832-18445886)
chr4 (25-141)||(17474270-17474388)
chr4 (88-125)||(47575579-47575616)
[»] chr2 (5 HSPs)
chr2 (105-246)||(13073564-13073705)
chr2 (100-250)||(22268589-22268738)
chr2 (91-155)||(42256169-42256233)
chr2 (202-250)||(17569586-17569634)
chr2 (102-167)||(27765746-27765812)
[»] scaffold0804 (1 HSPs)
scaffold0804 (24-242)||(435-653)


Alignment Details
Target: chr8 (Bit Score: 203; Significance: 1e-111; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 16 - 250
Target Start/End: Complemental strand, 7321710 - 7321477
Alignment:
Q  16 cacttcaaaatttgacaaagtaagggcccaagttaaaattgcagagtcttgatatgtttcaagtctttaacttttttatataaggaaggatttgagagac 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| || |||||||||||||||||||||||    
T  7321710 cacttcaaaatttgacaaagtaagggcccaagttaaaattgcagagtcttgttatgtttcaagtctttaacttctt-atataaggaaggatttgagagac 7321612  T
Q  116 gttggagaagtgttagcgcattaagagtccttgagaagctatcaaatcaagatgttggaatgttgcgtgatatggttaataccatttgaaaagacattca 215  Q
    ||||||||||||| |||| |||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  7321611 gttggagaagtgtcagcgtattaagagtccttgagaagcaatcaaatcaagatgttggaatgttgcatgatatggttaataccatttgaaaagacattca 7321512  T
Q  216 aaatctattgctgcaaatagaattatctgtttcat 250  Q
    |||||||||||||||||||||||||||||||||||    
T  7321511 aaatctattgctgcaaatagaattatctgtttcat 7321477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 23 - 250
Target Start/End: Complemental strand, 29757830 - 29757602
Alignment:
Q  23 aaatttgacaaagtaagggcccaagttaaaattgcagagtcttgatatgtt--tcaagtctttaacttttttatataaggaaggatttgagagacgttgg 120  Q
    |||||||| | ||||||||| ||||||||| ||| ||||||||| | ||||  ||||||||| | ||  || |||||  |||||||||||||||||||||    
T  29757830 aaatttgatagagtaagggcacaagttaaagttgaagagtcttgttgtgttcttcaagtcttgatctcctt-atatagagaaggatttgagagacgttgg 29757732  T
Q  121 agaagtgttagcgcattaagagtccttgagaagctatcaaatcaagatgttggaatgttgcgtgatatggttaataccatttgaaaagacattcaaaatc 220  Q
    |||||| | || |||||||||||| ||||||| ||||||||| |||| |||||||| |||| |||||||||||||  ||||||||||||||||| |||||    
T  29757731 agaagtatcagtgcattaagagtcattgagaacctatcaaataaagacgttggaattttgcctgatatggttaatgtcatttgaaaagacattcgaaatc 29757632  T
Q  221 tattgctgcaaatagaattatctgtttcat 250  Q
     || ||||||||||||||||| ||||||||    
T  29757631 catggctgcaaatagaattatatgtttcat 29757602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 23 - 250
Target Start/End: Complemental strand, 29771979 - 29771752
Alignment:
Q  23 aaatttgacaaagtaagggcccaagttaaaattgcagagtcttgatatgtt--tcaagtctttaacttttttatataaggaaggatttgagagacgttgg 120  Q
    |||||||||| ||||||| | ||||||||||||| ||||||||| | ||||  ||||||||| | ||  || |||||  |||| ||||||||||||||||    
T  29771979 aaatttgacagagtaagg-cacaagttaaaattgaagagtcttgttgtgttcttcaagtcttcatctcctt-atatagagaagtatttgagagacgttgg 29771882  T
Q  121 agaagtgttagcgcattaagagtccttgagaagctatcaaatcaagatgttggaatgttgcgtgatatggttaataccatttgaaaagacattcaaaatc 220  Q
    |||| ||| || ||||||||||| |||||||| |||||||||||||| ||||||||||||| || ||||||||||    |||||||||||||   ||| |    
T  29771881 agaaatgtcagtgcattaagagttcttgagaacctatcaaatcaagacgttggaatgttgcctggtatggttaatgttgtttgaaaagacatctgaaacc 29771782  T
Q  221 tattgctgcaaatagaattatctgtttcat 250  Q
     |||||||||| ||||||||||||||||||    
T  29771781 cattgctgcaagtagaattatctgtttcat 29771752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 94 - 250
Target Start/End: Original strand, 19008097 - 19008252
Alignment:
Q  94 tataaggaaggatttgagagacgttggagaagtgttagcgcattaagagtccttgagaagctatcaaatcaagat-gttggaatgttgcgtgatatggtt 192  Q
    |||||| ||||||||||||||||||||||| || | |||||||||||| || |||||||| | |||||||||  | ||||||||||||| ||||||| ||    
T  19008097 tataagtaaggatttgagagacgttggaga-gtttcagcgcattaagattcgttgagaagtt-tcaaatcaaagtcgttggaatgttgcctgatatgatt 19008194  T
Q  193 aataccatttgaaaagacattcaaaatctattgctgcaaatagaattatctgtttcat 250  Q
    |||  ||||| || |||||||| ||||  || | ||||||||||||||| ||||||||    
T  19008195 aatgtcattttaagagacattcgaaattcatggttgcaaatagaattatttgtttcat 19008252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 134 - 247
Target Start/End: Complemental strand, 18528258 - 18528145
Alignment:
Q  134 cattaagagtccttgagaagctatcaaatcaa-gatgttggaatgttgcgtgatatggttaataccatttgaaaagacattcaaaatctattgctgcaaa 232  Q
    ||||||||||| ||||||||| |||||||||| || ||||||||||| | ||| ||| ||||| |||||||||||||||||| ||||| | | || | ||    
T  18528258 cattaagagtctttgagaagc-atcaaatcaaagacgttggaatgtttcctgacatgattaatgccatttgaaaagacattcgaaatccactcctactaa 18528160  T
Q  233 tagaattatctgttt 247  Q
    |||||||||||||||    
T  18528159 tagaattatctgttt 18528145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 134 - 247
Target Start/End: Complemental strand, 28800990 - 28800877
Alignment:
Q  134 cattaagagtccttgagaagctatcaaatcaagatgttggaatgttgcgtgatatggttaataccatttgaaaagaca-ttcaaaatctattgctgcaaa 232  Q
    ||||||||||| |||||||| | ||||||||||| ||||||||||||  |||||||||||||    |||||||||||| || |||||| |||| |||||     
T  28800990 cattaagagtctttgagaagttttcaaatcaagacgttggaatgttgtctgatatggttaatgttgtttgaaaagacatttgaaaatc-attgttgcaat 28800892  T
Q  233 tagaattatctgttt 247  Q
    |||||||||||||||    
T  28800891 tagaattatctgttt 28800877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 91 - 192
Target Start/End: Original strand, 18565067 - 18565165
Alignment:
Q  91 ttatataaggaaggatttgagagacgttggagaagtgttagcgcattaagagtccttgagaagctatcaaatcaa-gatgttggaatgttgcgtgatatg 189  Q
    ||||||| | |||||||||||||| ||||||| |||| ||  |||||||||||| ||||||| | ||||||| || |||||||||||||||  |||||||    
T  18565067 ttatataggcaaggatttgagagatgttggag-agtgcta--gcattaagagtcgttgagaaac-atcaaataaaggatgttggaatgttgtatgatatg 18565162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 101 - 167
Target Start/End: Complemental strand, 23521181 - 23521116
Alignment:
Q  101 aaggatttgagagacgttggagaagtgttagcgcattaagagtccttgagaagctatcaaatcaaga 167  Q
    |||||||| |||||||||| ||| |||| ||||||||||||||| ||| |||| | |||||||||||    
T  23521181 aaggatttaagagacgttgaagaggtgtcagcgcattaagagtcgttgggaag-tttcaaatcaaga 23521116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 91 - 155
Target Start/End: Complemental strand, 24308960 - 24308893
Alignment:
Q  91 ttatataaggaaggatttgagagacgttggaga---agtgttagcgcattaagagtccttgagaagct 155  Q
    ||||||| | |||||||||||||||||||||||   | ||| |||||| | |||||||||||||||||    
T  24308960 ttatataggcaaggatttgagagacgttggagaaccaatgtcagcgcaattagagtccttgagaagct 24308893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 101 - 166
Target Start/End: Original strand, 26576508 - 26576572
Alignment:
Q  101 aaggatttgagagacgttggagaagtgttagcgcattaagagtccttgagaagctatcaaatcaag 166  Q
    ||||||||||||||||||  ||| ||   ||||||||||||||| |||||||||| ||||||||||    
T  26576508 aaggatttgagagacgttacagaggttccagcgcattaagagtcgttgagaagct-tcaaatcaag 26576572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 100; Significance: 1e-49; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 107 - 250
Target Start/End: Complemental strand, 31584517 - 31584374
Alignment:
Q  107 ttgagagacgttggagaagtgttagcgcattaagagtccttgagaagctatcaaatcaagatgttggaatgttgcgtgatatggttaataccatttgaaa 206  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||  ||||| |||||||  | || ||||    
T  31584517 ttgagagacgttggagaagtgtcagcgcattaagagtccttgagaagctatcaaatcaagatgttggaatgttgtctgatacggttaatgtcgttcgaaa 31584418  T
Q  207 agacattcaaaatctattgctgcaaatagaattatctgtttcat 250  Q
    |||||||| ||||||||||||||||||||||| ||| |||||||    
T  31584417 agacattcgaaatctattgctgcaaatagaatcatccgtttcat 31584374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 24 - 241
Target Start/End: Complemental strand, 25791738 - 25791520
Alignment:
Q  24 aatttgacaaagtaagggcccaagttaaaattgcagagtcttgatatgtt--tcaagtctttaacttttttatataaggaaggatttgagagacgttgga 121  Q
    ||||| ||||||||| ||| ||||||||||||  ||||||||  |  |||  ||||||||| ||||| || ||||| | | |||||||||||||||||||    
T  25791738 aatttcacaaagtaaaggcacaagttaaaattatagagtcttatttagttcttcaagtcttcaacttctt-atataggcatggatttgagagacgttgga 25791640  T
Q  122 gaagtgttagcgcattaagagtccttgagaagctatcaaatcaagatgttggaatgttgcgtgatatggttaataccatttgaaaagacattcaaaatct 221  Q
     |||||| | | |||||||||||||||||||||||||||||||||| |||||||| |||| ||||||| |||||    ||||||||||||||| ||||||    
T  25791639 aaagtgtcaactcattaagagtccttgagaagctatcaaatcaagacgttggaatattgcctgatatgattaatgttgtttgaaaagacattcgaaatct 25791540  T
Q  222 attgctgcaaatagaattat 241  Q
    ||| | ||||||||||||||    
T  25791539 attacagcaaatagaattat 25791520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 91 - 250
Target Start/End: Original strand, 15440595 - 15440746
Alignment:
Q  91 ttatataaggaaggatttgagagacgttggagaagtgttagcgcattaagagtccttgagaagctatcaaatcaagatgttggaatgttgcgtgatatgg 190  Q
    ||||||| | || |||||||||||| |||||||||||| || |||||||||||| ||||||||||||||||||||||||||||||||||         ||    
T  15440595 ttatataggcaaagatttgagagacattggagaagtgtcagtgcattaagagtctttgagaagctatcaaatcaagatgttggaatgtt--------cgg 15440686  T
Q  191 ttaataccatttgaaaagacattcaaaatctattgctgcaaatagaattatctgtttcat 250  Q
    || ||  | ||||||||||||| | || || |||||||||||||||||||||||||||||    
T  15440687 ttgatgtcttttgaaaagacataccaagtccattgctgcaaatagaattatctgtttcat 15440746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 146 - 242
Target Start/End: Original strand, 41029232 - 41029328
Alignment:
Q  146 ttgagaagctatcaaatcaagatgttggaatgttgcgtgatatggttaataccatttgaaaagacattcaaaatctattgctgcaaatagaattatc 242  Q
    ||||||| |||||||||||||| ||||||||||| | | |||||||||||  | ||||||||||||||  ||||| |||||||||||||||||||||    
T  41029232 ttgagaaactatcaaatcaagacgttggaatgttaccttatatggttaatgtcgtttgaaaagacatttcaaatccattgctgcaaatagaattatc 41029328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 130 - 250
Target Start/End: Original strand, 16636981 - 16637101
Alignment:
Q  130 agcgcattaagagtccttgagaagctatcaaatcaa-gatgttggaatgttgcgtgatatggttaataccatttgaaaagacattcaaaatctattgctg 228  Q
    ||||||||||||||||||||||| | |||||||||| ||  |||||||||||| ||  |||||||||  | ||||||||||||||  ||||| |||||||    
T  16636981 agcgcattaagagtccttgagaaac-atcaaatcaaagacattggaatgttgcctggcatggttaatgtcgtttgaaaagacatttgaaatccattgctg 16637079  T
Q  229 caaatagaattatctgtttcat 250  Q
    |||||||||||||  |||||||    
T  16637080 caaatagaattattcgtttcat 16637101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 24 - 242
Target Start/End: Complemental strand, 14580936 - 14580718
Alignment:
Q  24 aatttgacaaagtaagggcccaagttaaaattgcagagtcttg---atatgtttcaagtctttaacttttttatataaggaaggatttgagagacgttgg 120  Q
    ||||||||| ||||||||| ||| ||||||||||||| |||||   ||||  || ||||||||| ||  || ||||| | |||||||| |||||||||||    
T  14580936 aatttgacagagtaagggcacaa-ttaaaattgcagattcttgttcatattctttaagtctttagctcctt-atatatgcaaggattttagagacgttgg 14580839  T
Q  121 agaagtgttagcgcattaagagtccttgagaagctatcaaatcaa-gatgttggaatgttgcgtgatatggttaataccatttgaaaagacattcaaaat 219  Q
    ||| |||| ||||||||||||||  ||||||| || ||||||||| || |||| |||||||| ||||||||||||   | ||||||  ||||||| ||||    
T  14580838 aga-gtgtcagcgcattaagagttgttgagaaact-tcaaatcaaagacgttgaaatgttgcctgatatggttaacgtcgtttgaagggacattcgaaat 14580741  T
Q  220 ctattgctgcaaatagaattatc 242  Q
    | ||||  | |||||||||||||    
T  14580740 ccattgacggaaatagaattatc 14580718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 174 - 250
Target Start/End: Original strand, 34187881 - 34187957
Alignment:
Q  174 aatgttgcgtgatatggttaataccatttgaaaagacattcaaaatctattgctgcaaatagaattatctgtttcat 250  Q
    |||||||| |||||| ||||||  | ||||||||||||||||||||  |||||||||| ||||||||||||||||||    
T  34187881 aatgttgcatgatatagttaatgtcgtttgaaaagacattcaaaattcattgctgcaattagaattatctgtttcat 34187957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 73 - 166
Target Start/End: Complemental strand, 17316617 - 17316524
Alignment:
Q  73 ttcaagtctttaacttttttatataaggaaggatttgagagacgttggaga--agtgttagcgcattaagagtccttgagaagctatcaaatcaag 166  Q
    |||||||||| ||||| || ||||| | |||||||||||||||||||||||  ||||| ||||||||||||||| ||||||| || ||||||||||    
T  17316617 ttcaagtcttcaacttctt-atataggcaaggatttgagagacgttggagaagagtgtcagcgcattaagagtcgttgagaatct-tcaaatcaag 17316524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 91 - 195
Target Start/End: Original strand, 12397699 - 12397805
Alignment:
Q  91 ttatataaggaaggatttgagagacgttggaga--agtgttagcgcattaagagtccttgagaagctatcaaatcaa-gatgttggaatgttgcgtgata 187  Q
    ||||||| | ||||||||||||||||||| |||  |||||||  |||||||||||| |||||||| | ||||||||| |||||||||   |||| |||||    
T  12397699 ttatataggcaaggatttgagagacgttgaagaagagtgttaatgcattaagagtcgttgagaag-tttcaaatcaaggatgttggatcattgcctgata 12397797  T
Q  188 tggttaat 195  Q
    ||| ||||    
T  12397798 tggataat 12397805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 103 - 167
Target Start/End: Complemental strand, 17496850 - 17496785
Alignment:
Q  103 ggatttgagagacgttggagaag--tgttagcgcattaagagtccttgagaagctatcaaatcaaga 167  Q
    ||||||||||||| |||||||||  ||| ||||||||||||||| |||| ||||| |||||||||||    
T  17496850 ggatttgagagacattggagaagagtgtcagcgcattaagagtcgttgaaaagct-tcaaatcaaga 17496785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 103 - 166
Target Start/End: Complemental strand, 30806047 - 30805983
Alignment:
Q  103 ggatttgagagacgttggagaa--gtgttagcgcattaagagtccttgagaagctatcaaatcaag 166  Q
    |||||||||| ||||| |||||  |||| ||||||||||||||| |||||||||| ||||||||||    
T  30806047 ggatttgagatacgtttgagaatagtgtcagcgcattaagagtcgttgagaagct-tcaaatcaag 30805983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 91 - 152
Target Start/End: Original strand, 26897941 - 26898004
Alignment:
Q  91 ttatataaggaaggatttgagagacgttggagaa--gtgttagcgcattaagagtccttgagaa 152  Q
    ||||||| | ||||||||||||||||||| ||||  |||| | ||||||||||||| |||||||    
T  26897941 ttatataggcaaggatttgagagacgttgaagaagcgtgtcaacgcattaagagtcgttgagaa 26898004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 91 - 152
Target Start/End: Original strand, 33438813 - 33438876
Alignment:
Q  91 ttatataaggaaggatttgagagacgttggaga--agtgttagcgcattaagagtccttgagaa 152  Q
    ||||||||| || |||| |||||||||||||||  ||||| |||||||||||| || |||||||    
T  33438813 ttatataagcaaagattagagagacgttggagaagagtgtcagcgcattaagaatcgttgagaa 33438876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 83; Significance: 2e-39; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 23 - 250
Target Start/End: Original strand, 8109539 - 8109766
Alignment:
Q  23 aaatttgacaaagtaagggcccaagttaaaattgcagagtcttgatatgtt--tcaagtctttaacttttttatataaggaaggatttgagagacgttgg 120  Q
    |||||||||| ||||   || |||||||||||| |||||||||| | ||||  |||||| ||||||| |||| ||||  |||||||||||||||||||||    
T  8109539 aaatttgacagagtacatgcacaagttaaaattacagagtcttgttttgttcttcaagtatttaactctttt-tatagagaaggatttgagagacgttgg 8109637  T
Q  121 agaagtgttagcgcattaagagtccttgagaagctatcaaatcaagatgttggaatgttgcgtgatatggttaataccatttgaaaagacattcaaaatc 220  Q
    ||| |||  | | |||||| |||| |||||||||| ||||||||||| || |||||||||| | ||||||||||| |||||||||||||||||  |||||    
T  8109638 aga-gtgccaacacattaacagtctttgagaagctttcaaatcaagacgtaggaatgttgcctaatatggttaatgccatttgaaaagacatttgaaatc 8109736  T
Q  221 tattgctgcaaatagaattatctgtttcat 250  Q
     ||| ||||||||| ||||||| |||||||    
T  8109737 cattcctgcaaatataattatccgtttcat 8109766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 91 - 250
Target Start/End: Complemental strand, 17034667 - 17034508
Alignment:
Q  91 ttatataaggaaggatttgagagacgttggagaagtgttagcgcattaagagtccttgagaagctatcaaatca-agatgttggaatgttgcgtgatatg 189  Q
    ||||||| | ||||||||||||||||||||||| |||  | ||||||||||||| |||||||||| || ||||| ||| ||||||||||||| |||||||    
T  17034667 ttatataggcaaggatttgagagacgttggagaggtgacaacgcattaagagtcgttgagaagct-tcgaatcatagacgttggaatgttgcctgatatg 17034569  T
Q  190 gttaataccatttgaaaagacattcaaaatctattgctgcaaatagaattatctgtttcat 250  Q
    ||||||  | || | | ||| |||||||||  |||||||||| ||||||||||||||||||    
T  17034568 gttaatgtcgttggtagagatattcaaaattcattgctgcaagtagaattatctgtttcat 17034508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 102 - 166
Target Start/End: Original strand, 19905645 - 19905708
Alignment:
Q  102 aggatttgagagacgttggagaagtgttagcgcattaagagtccttgagaagctatcaaatcaag 166  Q
    |||||||||||||||||||||| |||  ||||||||||||||| |||||||| | ||||||||||    
T  19905645 aggatttgagagacgttggagaggtgccagcgcattaagagtcgttgagaag-tttcaaatcaag 19905708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 91 - 173
Target Start/End: Complemental strand, 19307152 - 19307068
Alignment:
Q  91 ttatataaggaaggatttgagagacgttggaga--agtgttagcgcattaagagtccttgagaagctatcaaatc-aagatgttgg 173  Q
    ||||||| | |||||||||||||||| ||||||  ||||| || |||||||||||| |||||||||| ||||||| ||||||||||    
T  19307152 ttatataggcaaggatttgagagacgctggagaagagtgtcagtgcattaagagtcattgagaagct-tcaaatcaaagatgttgg 19307068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 173 - 250
Target Start/End: Complemental strand, 27406082 - 27406005
Alignment:
Q  173 gaatgttgcgtgatatggttaataccatttgaaaagacattcaaaatctattgctgcaaatagaattatctgtttcat 250  Q
    ||||||||  ||||||||| |||  | |||||| |||||||| ||| | ||| |||||||||||||||||||||||||    
T  27406082 gaatgttgtctgatatggtgaatgtcgtttgaagagacattcgaaagccatttctgcaaatagaattatctgtttcat 27406005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 91 - 161
Target Start/End: Complemental strand, 5699858 - 5699788
Alignment:
Q  91 ttatataaggaaggatttgagagacgttggagaagtgttagcgcattaagagtccttgagaagctatcaaa 161  Q
    |||||||  |||||| ||||||||||||||||| ||   | | |||||||||||||||||||||| |||||    
T  5699858 ttatatagtgaaggaattgagagacgttggagaggttccaacacattaagagtccttgagaagctttcaaa 5699788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 134 - 250
Target Start/End: Complemental strand, 5638887 - 5638771
Alignment:
Q  134 cattaagagtccttgagaagctatcaaatcaagatgttggaatgttgcgtgatatggttaataccatttgaaaagaca-ttcaaaatctattgctgcaaa 232  Q
    |||||||||||||||||||| | ||||| ||||| |||||||| |||   |||||  |||||  | ||||||| |||| || |||||| ||| |||||||    
T  5638887 cattaagagtccttgagaagatttcaaaccaagacgttggaatattgttggatataattaatgtcgtttgaaatgacatttgaaaatc-atttctgcaaa 5638789  T
Q  233 tagaattatctgtttcat 250  Q
    ||| ||||||| ||||||    
T  5638788 taggattatctatttcat 5638771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 101 - 166
Target Start/End: Complemental strand, 13291897 - 13291831
Alignment:
Q  101 aaggatttgagagacgttggaga--agtgttagcgcattaagagtccttgagaagctatcaaatcaag 166  Q
    |||||||||||||||||||||||  ||||| | |||||||||| || |||||||| | ||||||||||    
T  13291897 aaggatttgagagacgttggagaagagtgtcaacgcattaagaatcgttgagaag-tttcaaatcaag 13291831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 73; Significance: 2e-33; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 91 - 247
Target Start/End: Complemental strand, 6561212 - 6561056
Alignment:
Q  91 ttatataaggaaggatttgagagacgttggagaagtgttagcgcattaagagtccttgagaagctatcaaatcaagatgttggaatgttgcgtgatatgg 190  Q
    ||||||| | || |||| ||||||| |||||||| ||||||||||||||||||| ||||||||||| |||||||||| ||||||||||||| ||||||||    
T  6561212 ttatataggaaatgattcgagagacattggagaaatgttagcgcattaagagtctttgagaagctaccaaatcaagacgttggaatgttgcatgatatgg 6561113  T
Q  191 ttaataccatttgaaaagacattcaaaatctattgctgcaaatagaattatctgttt 247  Q
    |||||  | ||||||||||||||  ||||  | || |||||||| ||||||| ||||    
T  6561112 ttaatgtcgtttgaaaagacattttaaattcaatgatgcaaatataattatccgttt 6561056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 156 - 241
Target Start/End: Original strand, 11130809 - 11130895
Alignment:
Q  156 atcaaatcaa-gatgttggaatgttgcgtgatatggttaataccatttgaaaagacattcaaaatctattgctgcaaatagaattat 241  Q
    |||||||||| || ||||||||||||| ||||||  |||||  | |||| ||||||||||||||||||||| |||||||||||||||    
T  11130809 atcaaatcaaagacgttggaatgttgcatgatatctttaatgtcgtttggaaagacattcaaaatctattgatgcaaatagaattat 11130895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 91 - 250
Target Start/End: Original strand, 17291451 - 17291610
Alignment:
Q  91 ttatataaggaaggatttgagagacgttggagaagtgttagcgcattaagagtccttgagaagctatcaaatc-aagatgttggaatgttgcgtgatatg 189  Q
    ||||||| | ||| ||||||||||||||||||| ||   |  |||||||||||| ||||||||| |||||||| ||||  |||||||||||| |||||||    
T  17291451 ttatataggaaagaatttgagagacgttggagaggttccaatgcattaagagtcgttgagaagc-atcaaatcaaagacattggaatgttgcctgatatg 17291549  T
Q  190 gttaataccatttgaaaagacattcaaaatctattgctgcaaatagaattatctgtttcat 250  Q
     |||||    |||||||| |||||  ||||  | | |||||||||||| ||||||||||||    
T  17291550 attaattttgtttgaaaatacatttgaaattcaattctgcaaatagaaatatctgtttcat 17291610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 91 - 195
Target Start/End: Original strand, 29031880 - 29031983
Alignment:
Q  91 ttatataaggaaggatttgagagacgttggagaagtgttagcgcattaagagtccttgagaagctatcaaatc-aagatgttggaatgttgcgtgatatg 189  Q
    ||||||| | |||||||||||||| ||||||| ||| | ||||||||||||||| || ||||||| ||||||| ||||  ||| |||||||| |||||||    
T  29031880 ttatataggaaaggatttgagagatgttggag-agtatcagcgcattaagagtcgttcagaagct-tcaaatcaaagacattgaaatgttgcatgatatg 29031977  T
Q  190 gttaat 195  Q
    ||||||    
T  29031978 gttaat 29031983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 91 - 167
Target Start/End: Complemental strand, 10815003 - 10814926
Alignment:
Q  91 ttatataaggaaggatttgagagacgttggagaag--tgttagcgcattaagagtccttgagaagctatcaaatcaaga 167  Q
    ||||||| | |||||||||||||| ||||||||||  ||| | || |||||||||| |||||||||| |||||||||||    
T  10815003 ttatatatgcaaggatttgagagatgttggagaagaatgtcaacgtattaagagtcattgagaagct-tcaaatcaaga 10814926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 88 - 155
Target Start/End: Original strand, 10821010 - 10821079
Alignment:
Q  88 tttttatataaggaaggatttgagagacgttggaga--agtgttagcgcattaagagtccttgagaagct 155  Q
    |||||||||| | || |||||||||||||| |||||  ||||| ||||||||||||||| |||| |||||    
T  10821010 tttttatataggcaaagatttgagagacgtcggagaagagtgtcagcgcattaagagtcattgaaaagct 10821079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 73 - 167
Target Start/End: Original strand, 4312245 - 4312339
Alignment:
Q  73 ttcaagtctttaacttttttatataaggaaggatttgagagacgttggagaag--tgttagcgcattaagagtccttgagaagctatcaaatcaaga 167  Q
    |||||||||| |||| ||| ||||| | |||||||||||||||||||||| ||  ||| |||||| ||||| |  |||||||||| |||||||||||    
T  4312245 ttcaagtcttcaactcttt-atataggcaaggatttgagagacgttggagtagaatgtcagcgcagtaagacttattgagaagct-tcaaatcaaga 4312339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 103 - 152
Target Start/End: Original strand, 19490838 - 19490889
Alignment:
Q  103 ggatttgagagacgttg--gagaagtgttagcgcattaagagtccttgagaa 152  Q
    |||||||||||||||||  ||||||||  ||||||||||||||| |||||||    
T  19490838 ggatttgagagacgttgcagagaagtgccagcgcattaagagtcattgagaa 19490889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 103 - 155
Target Start/End: Original strand, 21746959 - 21747011
Alignment:
Q  103 ggatttgagagacgttggagaagtgttagcgcattaagagtccttgagaagct 155  Q
    |||||||| |||||||| |||||||| ||| ||||||||||| |||| |||||    
T  21746959 ggatttgaaagacgttgaagaagtgtcagcacattaagagtcgttgaaaagct 21747011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 70; Significance: 1e-31; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 101 - 250
Target Start/End: Original strand, 8259273 - 8259422
Alignment:
Q  101 aaggatttgagagacgttggagaagtgttagcgcattaagagtccttgagaagctatcaaatcaagatgttggaatgttgcgtgatatggttaataccat 200  Q
    ||||||||||||||| || | |||||   | ||||||||||||| || ||||||||||||||||||| |||| |||||||  | |||||||||||  | |    
T  8259273 aaggatttgagagacattagggaagtcccaacgcattaagagtctttcagaagctatcaaatcaagacgttgaaatgttgtctaatatggttaatgtcgt 8259372  T
Q  201 ttgaaaagacattcaaaatctattgctgcaaatagaattatctgtttcat 250  Q
    |||||||||||||| ||||| |||||||||||||||||||| ||||||||    
T  8259373 ttgaaaagacattcgaaatccattgctgcaaatagaattatttgtttcat 8259422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 91 - 166
Target Start/End: Complemental strand, 17891573 - 17891497
Alignment:
Q  91 ttatataaggaaggatttgagagacgttggaga--agtgttagcgcattaagagtccttgagaagctatcaaatcaag 166  Q
    ||||||||| |||||||||||||||||||||||  ||||| | |||||||||||||  ||||||||| ||||||||||    
T  17891573 ttatataagcaaggatttgagagacgttggagaagagtgtcaacgcattaagagtcactgagaagct-tcaaatcaag 17891497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 185 - 250
Target Start/End: Complemental strand, 4031584 - 4031519
Alignment:
Q  185 atatggttaataccatttgaaaagacattcaaaatctattgctgcaaatagaattatctgtttcat 250  Q
    |||||||||||  | |||||| |||||||| ||||| ||||||||||||| |||||| ||||||||    
T  4031584 atatggttaatgtcttttgaagagacattcgaaatccattgctgcaaataaaattatttgtttcat 4031519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 185 - 250
Target Start/End: Original strand, 24865386 - 24865451
Alignment:
Q  185 atatggttaataccatttgaaaagacattcaaaatctattgctgcaaatagaattatctgtttcat 250  Q
    |||||||||||  | |||||| |||||||||||||| |||| |||||||| || ||| ||||||||    
T  24865386 atatggttaatgtcgtttgaagagacattcaaaatccattgttgcaaataaaagtatttgtttcat 24865451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 101 - 167
Target Start/End: Complemental strand, 27707529 - 27707462
Alignment:
Q  101 aaggatttgagagacgttggaga--agtgttagcgcattaagagtccttgagaagctatcaaatcaaga 167  Q
    ||||||||||||| |||||||||  ||||||   |||||||||||| |||||||||| |||||||||||    
T  27707529 aaggatttgagagtcgttggagaagagtgttgatgcattaagagtcgttgagaagct-tcaaatcaaga 27707462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 66; Significance: 3e-29; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 91 - 240
Target Start/End: Complemental strand, 19642221 - 19642072
Alignment:
Q  91 ttatataaggaaggatttgagagacgttggagaagtgttagcgcattaagagtccttgagaagctatcaaatcaagatgttggaatgttgcgtgatatgg 190  Q
    ||||||||| ||| |||| ||||||||| ||||||||| ||||||||||||||  || ||||||||||||||||||| |||| |||||| | ||||||||    
T  19642221 ttatataagcaagaattttagagacgttagagaagtgtcagcgcattaagagttattcagaagctatcaaatcaagacgttgaaatgtttcctgatatgg 19642122  T
Q  191 ttaataccatttgaaaagacattcaaaatctattgctgcaaatagaatta 240  Q
    ||| |  | ||||||||||||||  ||||| |||| ||||||| ||||||    
T  19642121 ttattgtcgtttgaaaagacatttgaaatccattgttgcaaattgaatta 19642072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 91 - 242
Target Start/End: Original strand, 31730435 - 31730586
Alignment:
Q  91 ttatataaggaaggatttgagagacgttggagaagtgttagcgcattaagagtccttgagaagctatcaaatca-agatgttggaatgttgcgtgatatg 189  Q
    ||||||| | || |||||||||||||||||||| |||| ||||||||||||||| |||||||||| |  ||||| ||| ||||||||||||| |||||||    
T  31730435 ttatataggcaaagatttgagagacgttggagaggtgtcagcgcattaagagtcgttgagaagct-tttaatcatagaggttggaatgttgcatgatatg 31730533  T
Q  190 gttaataccatttgaaaagacattcaaaatctattgctgcaaatagaattatc 242  Q
    ||||||  | || | | |||||||  ||||| |||||||||| ||||||||||    
T  31730534 gttaatgtcgttggtagagacatttgaaatccattgctgcaagtagaattatc 31730586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 120 - 246
Target Start/End: Original strand, 20690016 - 20690142
Alignment:
Q  120 gagaagtgttagcgcattaagagtccttgagaagctatcaaatcaagatgttggaatgttgcgtgatatggttaataccatttgaaaagacattcaaaat 219  Q
    |||| |||| ||| ||||||||||| |||||||||| ||||||||| ||||||||||||||  |||||||||||||  | ||||||||||||||  |||     
T  20690016 gagaggtgtcagcacattaagagtctttgagaagctttcaaatcaaaatgttggaatgttgtctgatatggttaatgtcgtttgaaaagacatttgaaaa 20690115  T
Q  220 ctattgctgcaaatagaattatctgtt 246  Q
    | ||| |||||| ||||||||| ||||    
T  20690116 ccatttctgcaattagaattatttgtt 20690142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 91 - 250
Target Start/End: Complemental strand, 25936434 - 25936276
Alignment:
Q  91 ttatataaggaaggatttgagagacgttggagaagtgttagcgcattaagagtccttgagaagctatcaaatc-aagatgttggaatgttgcgtgatatg 189  Q
    ||||||| | ||||||||||||||||||||||| |||  | ||||||||||||||||||||||| |||||||| |||| ||| |||| |||  |||||||    
T  25936434 ttatataggcaaggatttgagagacgttggagaggtgccaacgcattaagagtccttgagaagc-atcaaatcaaagacgttagaat-ttgtatgatatg 25936337  T
Q  190 gttaataccatttgaaaagacattcaaaatctattgctgcaaatagaattatctgtttcat 250  Q
    ||||||    || ||||| |||||  ||||| |||||||| |||||||||||  |||||||    
T  25936336 gttaatgttgttagaaaaaacatttgaaatccattgctgccaatagaattattcgtttcat 25936276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 118 - 239
Target Start/End: Complemental strand, 17338256 - 17338135
Alignment:
Q  118 tggagaagtgttagcgcattaagagtccttgagaagctatcaaatcaagatgttggaatgttgcgtgatatggttaataccatttgaaaagacattcaaa 217  Q
    ||||||||||  || || ||||||||| || ||||||  |||||||||||| |||||||||| | ||||||  |||||  | |||||||||||||| |||    
T  17338256 tggagaagtggcagtgcgttaagagtcttttagaagcattcaaatcaagatattggaatgtttcctgatattattaatgtcgtttgaaaagacatttaaa 17338157  T
Q  218 atctattgctgcaaatagaatt 239  Q
    || ||||| |||||||||||||    
T  17338156 atttattgttgcaaatagaatt 17338135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 137 - 246
Target Start/End: Original strand, 19692420 - 19692529
Alignment:
Q  137 taagagtccttgagaagctatcaaatcaagatgttggaatgttgcgtgatatggttaataccatttgaaaagacattcaaaatctattgctgcaaataga 236  Q
    |||||| | ||||||||||||| |||||||| |||| |||||||  |||||||||||||  ||||||||| | ||||| |||   ||||||||||||| |    
T  19692420 taagagcctttgagaagctatcgaatcaagacgttgaaatgttgtctgatatggttaatgtcatttgaaaggtcattccaaaaacattgctgcaaataaa 19692519  T
Q  237 attatctgtt 246  Q
    ||||| ||||    
T  19692520 attatttgtt 19692529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 94 - 167
Target Start/End: Original strand, 26013611 - 26013685
Alignment:
Q  94 tataaggaaggatttgagagacgttggagaa--gtgttagcgcattaagagtccttgagaagctatcaaatcaaga 167  Q
    |||||| |||||||||| |||||||||||||   ||| |||| |||||||||| |||||||||| |||||||||||    
T  26013611 tataagcaaggatttgaaagacgttggagaaatatgtcagcgtattaagagtcattgagaagct-tcaaatcaaga 26013685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 91 - 167
Target Start/End: Original strand, 37336518 - 37336595
Alignment:
Q  91 ttatataaggaaggatttgagagacgttggagaagt--gttagcgcattaagagtccttgagaagctatcaaatcaaga 167  Q
    ||||||| | |||||||||||| || |||||||| |  |||||||||||||||||| |||||||| | |||||||||||    
T  37336518 ttatataggcaaggatttgagatacattggagaaatatgttagcgcattaagagtcattgagaag-tttcaaatcaaga 37336595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 63; Significance: 2e-27; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 91 - 213
Target Start/End: Original strand, 20245262 - 20245383
Alignment:
Q  91 ttatataaggaaggatttgagagacgttggagaagtgttagcgcattaagagtccttgagaagctatcaaatcaagatgttggaatgttgcgtgatatgg 190  Q
    |||||||| ||||||||| ||||||||||||||| ||  |  ||||||||||||||||||||||||||||||||||| ||| ||||||||  || |||||    
T  20245262 ttatataaagaaggattttagagacgttggagaa-tgccaatgcattaagagtccttgagaagctatcaaatcaagacgttagaatgttgtctggtatgg 20245360  T
Q  191 ttaataccatttgaaaagacatt 213  Q
    ||||| |||||| ||||||||||    
T  20245361 ttaatgccattttaaaagacatt 20245383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 103 - 155
Target Start/End: Original strand, 18445832 - 18445886
Alignment:
Q  103 ggatttgagagacgttggagaa--gtgttagcgcattaagagtccttgagaagct 155  Q
    ||||||||||||||||||||||  |||| ||||||||||||||| ||||||||||    
T  18445832 ggatttgagagacgttggagaatagtgtaagcgcattaagagtcgttgagaagct 18445886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 141
Target Start/End: Complemental strand, 17474388 - 17474270
Alignment:
Q  25 atttgacaaagtaagggcccaagttaaaattgcagagtcttgatatgtt--tcaagtctttaacttttttatataaggaaggatttgagagacgttggag 122  Q
    |||| ||| ||||||||| || |||||||| ||||||||||| | | ||  ||||||||||| ||| || ||||| | ||||||||||||||||||| ||    
T  17474388 attttacagagtaagggcaca-gttaaaatagcagagtcttgttttattcttcaagtctttagcttctt-atataggcaaggatttgagagacgttgaag 17474291  T
Q  123 a--agtgttagcgcattaaga 141  Q
    |  ||||| ||||||||||||    
T  17474290 aagagtgtcagcgcattaaga 17474270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 88 - 125
Target Start/End: Original strand, 47575579 - 47575616
Alignment:
Q  88 tttttatataaggaaggatttgagagacgttggagaag 125  Q
    |||||||||| |||||||||||||||| ||||||||||    
T  47575579 tttttatatagggaaggatttgagagaagttggagaag 47575616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 63; Significance: 2e-27; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 105 - 246
Target Start/End: Original strand, 13073564 - 13073705
Alignment:
Q  105 atttgagagacgttggagaagtgttagcgcattaagagtccttgagaagctatcaaatcaa-gatgttggaatgttgcgtgatatggttaataccatttg 203  Q
    |||||||||||||| |||| |||| ||||||||||||||| ||||||| | |||||||||| || |||||||||||   |||||||||||||  |||||     
T  13073564 atttgagagacgttagagaggtgtcagcgcattaagagtcgttgagaatc-atcaaatcaaagacgttggaatgttatctgatatggttaatgtcatttt 13073662  T
Q  204 aaaagacattcaaaatctattgctgcaaatagaattatctgtt 246  Q
    ||||||||||| ||||||||||||||||||  |||||| ||||    
T  13073663 aaaagacattcgaaatctattgctgcaaatgaaattatttgtt 13073705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 100 - 250
Target Start/End: Original strand, 22268589 - 22268738
Alignment:
Q  100 gaaggatttgagagacgttggagaagtgttagcgcattaagagtccttgagaagctatcaaatcaagatgttggaatgttgcgtgatatggttaatacca 199  Q
    ||||||||||||||| ||| |||||||   || ||||||||||||| ||||||||||||||||||| ||||| |||| |||| ||||||| |||||  |     
T  22268589 gaaggatttgagagatgttcgagaagttccagtgcattaagagtccctgagaagctatcaaatcaa-atgtttgaatcttgcatgatatgattaatgtcg 22268687  T
Q  200 tttgaaaagacattcaaaatctattgctgcaaatagaattatctgtttcat 250  Q
    ||||||||||||||| ||||| |||  |||||||  |||||| | ||||||    
T  22268688 tttgaaaagacattcgaaatccattattgcaaatctaattatttatttcat 22268738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 91 - 155
Target Start/End: Original strand, 42256169 - 42256233
Alignment:
Q  91 ttatataaggaaggatttgagagacgttggagaagtgttagcgcattaagagtccttgagaagct 155  Q
    ||||||| | || |||||||||||||||||| |||||| | |||||||||| || ||||||||||    
T  42256169 ttatatatgcaatgatttgagagacgttggacaagtgtcaacgcattaagattcgttgagaagct 42256233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 202 - 250
Target Start/End: Complemental strand, 17569634 - 17569586
Alignment:
Q  202 tgaaaagacattcaaaatctattgctgcaaatagaattatctgtttcat 250  Q
    ||||||||||||| ||| | ||||||||||||||||||| || ||||||    
T  17569634 tgaaaagacattcgaaacccattgctgcaaatagaattacctatttcat 17569586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 102 - 167
Target Start/End: Complemental strand, 27765812 - 27765746
Alignment:
Q  102 aggatttgagagacgttggaga--agtgttagcgcattaagagtccttgagaagctatcaaatcaaga 167  Q
    ||||||||||||| ||||||||  ||||| | || |||||||||| |||||||||| |||||||||||    
T  27765812 aggatttgagagatgttggagaagagtgtcatcgtattaagagtcgttgagaagct-tcaaatcaaga 27765746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0804 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: scaffold0804
Description:

Target: scaffold0804; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 24 - 242
Target Start/End: Complemental strand, 653 - 435
Alignment:
Q  24 aatttgacaaagtaagggcccaagttaaaattgcagagtcttg---atatgtttcaagtctttaacttttttatataaggaaggatttgagagacgttgg 120  Q
    ||||||||| ||||||||| ||| ||||||||||||| |||||   ||||  || ||||||||| ||  || ||||| | |||||||| |||||||||||    
T  653 aatttgacagagtaagggcacaa-ttaaaattgcagattcttgttcatattctttaagtctttagctcctt-atatatgcaaggattttagagacgttgg 556  T
Q  121 agaagtgttagcgcattaagagtccttgagaagctatcaaatcaa-gatgttggaatgttgcgtgatatggttaataccatttgaaaagacattcaaaat 219  Q
    ||| |||| ||||||||||||||  ||||||| || ||||||||| || |||| |||||||| ||||||||||||   | ||||||  ||||||| ||||    
T  555 aga-gtgtcagcgcattaagagttgttgagaaact-tcaaatcaaagacgttgaaatgttgcctgatatggttaacgtcgtttgaagggacattcgaaat 458  T
Q  220 ctattgctgcaaatagaattatc 242  Q
    | ||||  | |||||||||||||    
T  457 ccattgacggaaatagaattatc 435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University