View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19047_low_12 (Length: 261)

Name: NF19047_low_12
Description: NF19047
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19047_low_12
NF19047_low_12
[»] chr8 (8 HSPs)
chr8 (40-261)||(7321263-7321466)
chr8 (1-126)||(7321111-7321236)
chr8 (109-144)||(7321202-7321237)
chr8 (5-42)||(24276940-24276977)
chr8 (3-42)||(18527861-18527900)
chr8 (5-38)||(25727280-25727313)
chr8 (216-261)||(28800817-28800862)
chr8 (216-261)||(29757546-29757591)
[»] chr1 (6 HSPs)
chr1 (161-260)||(25791400-25791499)
chr1 (159-261)||(31584267-31584363)
chr1 (216-261)||(19362030-19362075)
chr1 (216-261)||(19380670-19380715)
chr1 (3-42)||(31584109-31584148)
chr1 (5-42)||(17316149-17316186)
[»] chr2 (3 HSPs)
chr2 (157-241)||(22268769-22268853)
chr2 (157-261)||(17569477-17569575)
chr2 (90-130)||(22268843-22268883)
[»] chr7 (7 HSPs)
chr7 (157-260)||(8259434-8259531)
chr7 (216-261)||(11609117-11609162)
chr7 (179-233)||(28981281-28981335)
chr7 (216-261)||(4031463-4031508)
chr7 (5-42)||(10646562-10646599)
chr7 (5-42)||(19143889-19143926)
chr7 (5-42)||(20743288-20743325)
[»] chr3 (4 HSPs)
chr3 (157-261)||(5638658-5638761)
chr3 (5-41)||(4514995-4515031)
chr3 (5-41)||(9796490-9796526)
chr3 (5-41)||(38076107-38076143)
[»] chr6 (3 HSPs)
chr6 (212-261)||(11130915-11130964)
chr6 (5-43)||(29032320-29032358)
chr6 (176-237)||(24575893-24575954)
[»] scaffold0329 (1 HSPs)
scaffold0329 (90-190)||(4452-4551)
[»] chr4 (2 HSPs)
chr4 (5-42)||(17473839-17473876)
chr4 (157-221)||(4414343-4414406)


Alignment Details
Target: chr8 (Bit Score: 118; Significance: 3e-60; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 40 - 261
Target Start/End: Original strand, 7321263 - 7321466
Alignment:
Q  40 aagtaaatttgaaaatttagattagatcttgaagacgcttgacctgactctgaaggtcaccagactctgaaggctatcagactctgaaggatagaagact 139  Q
    ||||||||||||||| |||||||||||| |||||| |||||||||||||| ||||||||                 ||||||||||||||||||||||||    
T  7321263 aagtaaatttgaaaacttagattagatcctgaagaagcttgacctgactccgaaggtca-----------------tcagactctgaaggatagaagact 7321345  T
Q  140 ctgaggattttgcgaacactctgaaggacacgttagactttgtcttcttctcaagatgtccctatcagacttagatagtacagtttttcttcttctgaat 239  Q
    |||||||||| || |||||||||||||||| || | ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  7321346 ctgaggattt-gcaaacactctgaaggacatgtcatactttgtcttcttctcaagatgtccctatcagactcagatagtacagtttttcttcttctgaat 7321444  T
Q  240 catgtgttaagtcaaattcaag 261  Q
    |||||| |||||||||||||||    
T  7321445 catgtgctaagtcaaattcaag 7321466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 126
Target Start/End: Original strand, 7321111 - 7321236
Alignment:
Q  1 tcatcaaggtctgaacatgtatgagagcatcagaagcacaagtaaatttgaaaatttagattagatcttgaagacgcttgacctgactctgaaggtcacc 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||| ||||||||||||||| ||||  | |    
T  7321111 tcatcaaggtctgaacatgtatgagagcatcagaagcacaagtaaatttgaaaacttagattagatcctgaagaagcttgacctgactcttaaggctatc 7321210  T
Q  101 agactctgaaggctatcagactctga 126  Q
    |||||||||||| ||  |||||||||    
T  7321211 agactctgaaggatagaagactctga 7321236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 109 - 144
Target Start/End: Original strand, 7321202 - 7321237
Alignment:
Q  109 aaggctatcagactctgaaggatagaagactctgag 144  Q
    ||||||||||||||||||||||||||||||||||||    
T  7321202 aaggctatcagactctgaaggatagaagactctgag 7321237  T

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Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 5 - 42
Target Start/End: Original strand, 24276940 - 24276977
Alignment:
Q  5 caaggtctgaacatgtatgagagcatcagaagcacaag 42  Q
    |||||||||||||||||| |||||||||||||||||||    
T  24276940 caaggtctgaacatgtataagagcatcagaagcacaag 24276977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 3 - 42
Target Start/End: Original strand, 18527861 - 18527900
Alignment:
Q  3 atcaaggtctgaacatgtatgagagcatcagaagcacaag 42  Q
    |||||||||||||||| ||| |||||||||||||||||||    
T  18527861 atcaaggtctgaacatatataagagcatcagaagcacaag 18527900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 5 - 38
Target Start/End: Original strand, 25727280 - 25727313
Alignment:
Q  5 caaggtctgaacatgtatgagagcatcagaagca 38  Q
    |||||||||||||||||| |||||||||||||||    
T  25727280 caaggtctgaacatgtataagagcatcagaagca 25727313  T

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Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 216 - 261
Target Start/End: Original strand, 28800817 - 28800862
Alignment:
Q  216 agtacagtttttcttcttctgaatcatgtgttaagtcaaattcaag 261  Q
    |||||| ||| ||||||||||||||| ||| |||||||||||||||    
T  28800817 agtacaatttgtcttcttctgaatcacgtgctaagtcaaattcaag 28800862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 216 - 261
Target Start/End: Original strand, 29757546 - 29757591
Alignment:
Q  216 agtacagtttttcttcttctgaatcatgtgttaagtcaaattcaag 261  Q
    |||||| ||| ||||||||| ||||| |||||||||||||||||||    
T  29757546 agtacattttgtcttcttctaaatcacgtgttaagtcaaattcaag 29757591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 52; Significance: 7e-21; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 161 - 260
Target Start/End: Original strand, 25791400 - 25791499
Alignment:
Q  161 tgaaggacacgttagactttgtcttcttctcaagatgtccctatcagacttagatagtacagtttttcttcttctgaatcatgtgttaagtcaaattcaa 260  Q
    |||||||||| | ||| ||||||||||||  ||||||||||||| ||||| | |||||||||||| | ||||||||||||| ||| ||||||||||||||    
T  25791400 tgaaggacacatcagattttgtcttcttcagaagatgtccctattagactcaaatagtacagtttgttttcttctgaatcacgtgctaagtcaaattcaa 25791499  T

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Target: chr1; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 159 - 261
Target Start/End: Original strand, 31584267 - 31584363
Alignment:
Q  159 tctgaaggacacgttagactttgtcttcttctcaagatgtccctatcagacttagatagtacagtttttcttcttctgaatcatgtgttaagtcaaattc 258  Q
    ||||||||||| || |||||||||||||||||||||||||| || ||       ||||||||| ||| |||||||||||||||  |||||||||||||||    
T  31584267 tctgaaggacatgtcagactttgtcttcttctcaagatgtcactttc------ggatagtacaatttgtcttcttctgaatcacatgttaagtcaaattc 31584360  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 216 - 261
Target Start/End: Original strand, 19362030 - 19362075
Alignment:
Q  216 agtacagtttttcttcttctgaatcatgtgttaagtcaaattcaag 261  Q
    |||||| ||| ||||||| |||||||||||||||||||||||||||    
T  19362030 agtacattttgtcttcttttgaatcatgtgttaagtcaaattcaag 19362075  T

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Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 216 - 261
Target Start/End: Original strand, 19380670 - 19380715
Alignment:
Q  216 agtacagtttttcttcttctgaatcatgtgttaagtcaaattcaag 261  Q
    |||||| ||| ||||||| |||||||||||||||||||||||||||    
T  19380670 agtacattttgtcttcttttgaatcatgtgttaagtcaaattcaag 19380715  T

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Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 3 - 42
Target Start/End: Original strand, 31584109 - 31584148
Alignment:
Q  3 atcaaggtctgaacatgtatgagagcatcagaagcacaag 42  Q
    |||||||||||| ||| |||||||||||||||||||||||    
T  31584109 atcaaggtctgagcatatatgagagcatcagaagcacaag 31584148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 5 - 42
Target Start/End: Original strand, 17316149 - 17316186
Alignment:
Q  5 caaggtctgaacatgtatgagagcatcagaagcacaag 42  Q
    |||||||||||||||||| ||||||||| |||||||||    
T  17316149 caaggtctgaacatgtataagagcatcaaaagcacaag 17316186  T

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Target: chr2 (Bit Score: 49; Significance: 4e-19; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 157 - 241
Target Start/End: Complemental strand, 22268853 - 22268769
Alignment:
Q  157 actctgaaggacacgttagactttgtcttcttctcaagatgtccctatcagacttagatagtacagtttttcttcttctgaatca 241  Q
    ||||||||||||||||  || ||||||||||||| ||||||||||||||||||| |||||  ||||||| ||||||||| |||||    
T  22268853 actctgaaggacacgtctgattttgtcttcttctgaagatgtccctatcagactcagatatcacagtttgtcttcttctcaatca 22268769  T

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Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 157 - 261
Target Start/End: Original strand, 17569477 - 17569575
Alignment:
Q  157 actctgaaggacacgttagactttgtcttcttctcaagatgtccctatcagacttagatagtacagtttttcttcttctgaatcatgtgttaagtcaaat 256  Q
    ||||| |||||||||||||||||||||||||||| |||||||| ||       ||||||||||||| || || |||||| ||||| |||||| |||||||    
T  17569477 actctcaaggacacgttagactttgtcttcttctgaagatgtcact------tttagatagtacagcttgtcctcttctaaatcacgtgttatgtcaaat 17569570  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 90 - 130
Target Start/End: Complemental strand, 22268883 - 22268843
Alignment:
Q  90 tgaaggtcaccagactctgaaggctatcagactctgaagga 130  Q
    |||||||||||| |||||||||| ||| |||||||||||||    
T  22268883 tgaaggtcaccaaactctgaaggatatgagactctgaagga 22268843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 157 - 260
Target Start/End: Complemental strand, 8259531 - 8259434
Alignment:
Q  157 actctgaaggacacgttagactttgtcttcttctcaagatgtccctatcagacttagatagtacagtttttcttcttctgaatcatgtgttaagtcaaat 256  Q
    |||||||||||||||| | | | ||||||||||||||||||||||||||      | |||||| | ||| |||||||||||||||||||  |||||||||    
T  8259531 actctgaaggacacgtcataatgtgtcttcttctcaagatgtccctatc------atatagtataatttgtcttcttctgaatcatgtgccaagtcaaat 8259438  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 216 - 261
Target Start/End: Original strand, 11609117 - 11609162
Alignment:
Q  216 agtacagtttttcttcttctgaatcatgtgttaagtcaaattcaag 261  Q
    |||||| ||| ||||||||| |||||||||||||||||||||||||    
T  11609117 agtacaatttgtcttcttctaaatcatgtgttaagtcaaattcaag 11609162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 179 - 233
Target Start/End: Complemental strand, 28981335 - 28981281
Alignment:
Q  179 ttgtcttcttctcaagatgtccctatcagacttagatagtacagtttttcttctt 233  Q
    ||||| |||||| |||||||| ||||||||||||| ||||||| ||| |||||||    
T  28981335 ttgtcgtcttctgaagatgtcactatcagacttaggtagtacactttgtcttctt 28981281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 216 - 261
Target Start/End: Original strand, 4031463 - 4031508
Alignment:
Q  216 agtacagtttttcttcttctgaatcatgtgttaagtcaaattcaag 261  Q
    |||||| ||| ||||||||||||||| ||||| |||||||||||||    
T  4031463 agtacaatttatcttcttctgaatcacgtgtttagtcaaattcaag 4031508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 5 - 42
Target Start/End: Original strand, 10646562 - 10646599
Alignment:
Q  5 caaggtctgaacatgtatgagagcatcagaagcacaag 42  Q
    |||||||||||||||||| |||||||||||| ||||||    
T  10646562 caaggtctgaacatgtataagagcatcagaaacacaag 10646599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 5 - 42
Target Start/End: Complemental strand, 19143926 - 19143889
Alignment:
Q  5 caaggtctgaacatgtatgagagcatcagaagcacaag 42  Q
    |||||||||||||||||| ||||||| |||||||||||    
T  19143926 caaggtctgaacatgtataagagcattagaagcacaag 19143889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 5 - 42
Target Start/End: Complemental strand, 20743325 - 20743288
Alignment:
Q  5 caaggtctgaacatgtatgagagcatcagaagcacaag 42  Q
    |||||||||||||||||| ||||||| |||||||||||    
T  20743325 caaggtctgaacatgtataagagcattagaagcacaag 20743288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 157 - 261
Target Start/End: Original strand, 5638658 - 5638761
Alignment:
Q  157 actctgaaggacacgttagactttgtcttcttctcaagatgtccctatcagacttagatagtacagtttttcttcttctgaatcatgtgttaagtcaaat 256  Q
    ||||||| |||||||| ||||||| ||||||||| || || ||  ||||||||| | |||||||||||| ||||||| |||||||  || ||||||||||    
T  5638658 actctgatggacacgtcagactttatcttcttctgaatatatct-tatcagactcaaatagtacagtttgtcttcttatgaatcacatgctaagtcaaat 5638756  T
Q  257 tcaag 261  Q
    |||||    
T  5638757 tcaag 5638761  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 41
Target Start/End: Complemental strand, 4515031 - 4514995
Alignment:
Q  5 caaggtctgaacatgtatgagagcatcagaagcacaa 41  Q
    |||||||||||||||||| ||||||||||||||||||    
T  4515031 caaggtctgaacatgtataagagcatcagaagcacaa 4514995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 41
Target Start/End: Complemental strand, 9796526 - 9796490
Alignment:
Q  5 caaggtctgaacatgtatgagagcatcagaagcacaa 41  Q
    |||||||||||||||||| ||||||||||||||||||    
T  9796526 caaggtctgaacatgtataagagcatcagaagcacaa 9796490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 41
Target Start/End: Original strand, 38076107 - 38076143
Alignment:
Q  5 caaggtctgaacatgtatgagagcatcagaagcacaa 41  Q
    |||||||||||||||||| ||||||||||||||||||    
T  38076107 caaggtctgaacatgtataagagcatcagaagcacaa 38076143  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 212 - 261
Target Start/End: Complemental strand, 11130964 - 11130915
Alignment:
Q  212 agatagtacagtttttcttcttctgaatcatgtgttaagtcaaattcaag 261  Q
    |||||||||| ||| ||||||||||||||| ||| |||||||||||||||    
T  11130964 agatagtacaatttgtcttcttctgaatcacgtgctaagtcaaattcaag 11130915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 43
Target Start/End: Complemental strand, 29032358 - 29032320
Alignment:
Q  5 caaggtctgaacatgtatgagagcatcagaagcacaagt 43  Q
    ||||| |||||||||||| ||||||||||||||||||||    
T  29032358 caaggcctgaacatgtataagagcatcagaagcacaagt 29032320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 176 - 237
Target Start/End: Complemental strand, 24575954 - 24575893
Alignment:
Q  176 actttgtcttcttctcaagatgtccctatcagacttagatagtacagtttttcttcttctga 237  Q
    ||||||| ||||||| ||| |||| |||||| ||||||||||||||  || |||||||||||    
T  24575954 actttgttttcttctgaagttgtctctatcatacttagatagtacaacttgtcttcttctga 24575893  T

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Target: scaffold0329 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0329
Description:

Target: scaffold0329; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 90 - 190
Target Start/End: Complemental strand, 4551 - 4452
Alignment:
Q  90 tgaaggtcaccagactctgaaggctatcagactctgaaggatagaagactctgaggattttgcgaacactctgaaggacacgttagactttgtcttcttc 189  Q
    ||||||| | |||||||| | ||  |||||||| ||| |||||||||||||| |||||| |  ||| ||| |||||||||||| |||||||||| |||||    
T  4551 tgaaggttatcagactctaagggtcatcagactgtgagggatagaagactctaaggattat-tgaagactatgaaggacacgtcagactttgtcgtcttc 4453  T

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Target: chr4 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 5 - 42
Target Start/End: Original strand, 17473839 - 17473876
Alignment:
Q  5 caaggtctgaacatgtatgagagcatcagaagcacaag 42  Q
    |||||||||||||||||| |||| ||||||||||||||    
T  17473839 caaggtctgaacatgtataagagtatcagaagcacaag 17473876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 157 - 221
Target Start/End: Complemental strand, 4414406 - 4414343
Alignment:
Q  157 actctgaaggacacgttagactttgtcttcttctcaagatgtccctatcagacttagatagtaca 221  Q
    |||||||||||||||||||| |||||| |||| | ||| ||||  ||||||||| ||||||||||    
T  4414406 actctgaaggacacgttaga-tttgtcatcttttgaaggtgtcattatcagactcagatagtaca 4414343  T

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