View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19047_low_13 (Length: 255)
Name: NF19047_low_13
Description: NF19047
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19047_low_13 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 200; Significance: 1e-109; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 28 - 251
Target Start/End: Original strand, 47292050 - 47292273
Alignment:
| Q |
28 |
ttacaaactacaacaaactataaggtagacatcgcaaaactaggaccactcggtgtaggatgattttggttaccaagcatctcatccaactcttttgcaa |
127 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| || || ||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47292050 |
ttacaaactacaacaaactataaggtagacatcgcaaaattatgagcactcggtgtaggataattttggttaccaagcatctcatccaactcttttgcaa |
47292149 |
T |
|
| Q |
128 |
acctcttcatatcttcagagggcaaacaaattggtaacatcaaagtttcttctccatttatattcttatatgggacgatataggttgatccaggaaatgt |
227 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47292150 |
acctcttcatatcttcagagggcaaacaaattggtaacatcaaagtttcttctccatttatattcttatatgggacgatataggttgatccaggaaatgt |
47292249 |
T |
|
| Q |
228 |
tccagccccaccctttgctactcc |
251 |
Q |
| |
|
|||||||||||| ||||| ||||| |
|
|
| T |
47292250 |
tccagccccaccttttgcaactcc |
47292273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 21 - 251
Target Start/End: Original strand, 47298650 - 47298880
Alignment:
| Q |
21 |
tacaattttacaaactacaacaaactataaggtagacatcgcaaaactaggaccactcggtgtaggatgattttggttaccaagcatctcatccaactct |
120 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47298650 |
tacaattttacaaactacaacaaactataaggtagacatcgcaaaactaggagcactcaatgtaggatgattttggttaccaagcatctcatccaactct |
47298749 |
T |
|
| Q |
121 |
tttgcaaacctcttcatatcttcagagggcaaacaaattggtaacatcaaagtttcttctccatttatattcttatatgggacgatataggttgatccag |
220 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
47298750 |
tttgcaaacctcttcatatcttcagagggcaaacaaattggtaacatcaaagtttcttctccttttatattcttatatgggacgatataggttgctccag |
47298849 |
T |
|
| Q |
221 |
gaaatgttccagccccaccctttgctactcc |
251 |
Q |
| |
|
|||| | |||||||||||| ||||| ||||| |
|
|
| T |
47298850 |
gaaaaggtccagccccaccttttgcaactcc |
47298880 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 64 - 213
Target Start/End: Complemental strand, 47243258 - 47243109
Alignment:
| Q |
64 |
aaactaggaccactcggtgtaggatgattttggttaccaagcatctcatccaactcttttgcaaacctcttcatatcttcagagggcaaacaaattggta |
163 |
Q |
| |
|
||||||||||||||| |||||||| |||||||||||||||||| ||||| |||||||| |||||||||||||||||||||| |||||| |||||||||| |
|
|
| T |
47243258 |
aaactaggaccactcattgtaggataattttggttaccaagcatatcatctaactctttagcaaacctcttcatatcttcagggggcaagcaaattggta |
47243159 |
T |
|
| Q |
164 |
acatcaaagtttcttctccatttatattcttatatgggacgatataggtt |
213 |
Q |
| |
|
| || || ||||||||| ||| |||||||| ||||| ||||||||| |
|
|
| T |
47243158 |
atattaacccttcttctccttttgcattcttatgcgggacaatataggtt |
47243109 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 41 - 239
Target Start/End: Complemental strand, 47284150 - 47283952
Alignment:
| Q |
41 |
caaactataaggtagacatcgcaaaactaggaccactcggtgtaggatgattttggttaccaagcatctcatccaactcttttgcaaacctcttcatatc |
140 |
Q |
| |
|
|||||||||||||||| || |||||||||||||| ||| |||||| |||||||| ||||||| ||||| ||| ||||||| ||||||||||||||| | |
|
|
| T |
47284150 |
caaactataaggtagagatgacaaaactaggaccaatcgttgtaggttgattttgattaccaaacatcttatctaactcttcagcaaacctcttcataac |
47284051 |
T |
|
| Q |
141 |
ttcagagggcaaacaaattggtaacatcaaagtttcttctccatttatattcttatatgggacgatataggttgatccaggaaatgttccagccccacc |
239 |
Q |
| |
|
|||||||| || ||||| |||| || ||| ||||||||| | | |||||||| ||||| ||||| |||| |||||| || | |||||||||||| |
|
|
| T |
47284050 |
ttcagaggttaagaaaattagtaatattaaaccttcttctccttctgcattcttatgtgggattatatacgttgctccaggtaaaggtccagccccacc |
47283952 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 62 - 238
Target Start/End: Complemental strand, 47268165 - 47267988
Alignment:
| Q |
62 |
caaaactagga-ccactcggtgtaggatgattttggttaccaagcatctcatccaactcttttgcaaacctcttcatatcttcagagggcaaacaaattg |
160 |
Q |
| |
|
||||||||||| ||||| | | |||| | |||||| ||||||||||||||||| |||||||| ||||||||||||||| ||||| ||| |||||||| | |
|
|
| T |
47268165 |
caaaactaggaaccacttgctttaggttaattttgtttaccaagcatctcatctaactctttagcaaacctcttcatagcttcaaaggacaaacaaacta |
47268066 |
T |
|
| Q |
161 |
gtaacatcaaagtttcttctccatttatattcttatatgggacgatataggttgatccaggaaatgttccagccccac |
238 |
Q |
| |
|
|||| || ||| ||||||||| | || |||||||| ||||| |||||||| || ||||||||| | |||||||||| |
|
|
| T |
47268065 |
gtaatatgaaaccttcttctccttctacattcttatgtgggatgatataggctgctccaggaaaaggcccagccccac |
47267988 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 40 - 164
Target Start/End: Complemental strand, 47257409 - 47257285
Alignment:
| Q |
40 |
acaaactataaggtagacatcgcaaaactaggaccactcggtgtaggatgattttggttaccaagcatctcatccaactcttttgcaaacctcttcatat |
139 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||| |||||||| |||||||||||||||||| ||||| ||||| || ||||||||||||||| |
|
|
| T |
47257409 |
acaaactataaggtagacaagatgaaactaggaccactcattgtaggataattttggttaccaagcatatcatctaactccttaacaaacctcttcatat |
47257310 |
T |
|
| Q |
140 |
cttcagagggcaaacaaattggtaa |
164 |
Q |
| |
|
|||||| ||||| ||||||||||| |
|
|
| T |
47257309 |
cttcaggaggcaagcaaattggtaa |
47257285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 40 - 207
Target Start/End: Complemental strand, 47279558 - 47279391
Alignment:
| Q |
40 |
acaaactataaggtagacatcgcaaaactaggaccactcggtgtaggatgattttggttaccaagcatctcatccaactcttttgcaaacctcttcatat |
139 |
Q |
| |
|
|||||||||||||| || || |||||||||| ||| | | |||||| |||||||||||||||| ||||| ||| ||||||| ||||||||||||||| |
|
|
| T |
47279558 |
acaaactataaggtggagatgacaaaactaggcccaattgttgtaggttgattttggttaccaaacatcttatctaactcttcagcaaacctcttcataa |
47279459 |
T |
|
| Q |
140 |
cttcagagggcaaacaaattggtaacatcaaagtttcttctccatttatattcttatatgggacgata |
207 |
Q |
| |
|
||||||||| || ||||| |||| |||||| ||||||||| | | |||||||| ||||| |||| |
|
|
| T |
47279458 |
cttcagaggttaagaaaattagtaatatcaaaccttcttctccttctgcattcttatgtgggatgata |
47279391 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 40 - 213
Target Start/End: Complemental strand, 32731949 - 32731776
Alignment:
| Q |
40 |
acaaactataaggtagacatcgcaaaactaggaccactcggtgtaggatgattttggttaccaagcatctcatccaactcttttgcaaacctcttcatat |
139 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||| ||||||| |||||||||||||||||| ||||| |||||||| |||||||||||||||| |
|
|
| T |
32731949 |
acaaactataaggtagacaagatgaaactaggaccactcattgtaggacaattttggttaccaagcatatcatctaactctttagcaaacctcttcatat |
32731850 |
T |
|
| Q |
140 |
cttcagagggcaaacaaattggtaacatcaaagtttcttctccatttatattcttatatgggacgatataggtt |
213 |
Q |
| |
|
|||||| |||||| |||||||| || || || ||||||||| ||| |||||||| ||||| ||||||||| |
|
|
| T |
32731849 |
cttcagggggcaagcaaattggaaatattaacccttcttctccttttgcattcttatgcgggacaatataggtt |
32731776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 65 - 164
Target Start/End: Complemental strand, 20519930 - 20519834
Alignment:
| Q |
65 |
aactaggaccactcggtgtaggatgattttggttaccaagcatctcatccaactcttttgcaaacctcttcatatcttcagagggcaaacaaattggtaa |
164 |
Q |
| |
|
||||| |||| |||| ||||||||||| ||||||||||||||||||| |||||||| ||||||||||||||||||||| | |||||| |||||||||| |
|
|
| T |
20519930 |
aactatgacctctcgttgtaggatgat---ggttaccaagcatctcatctaactctttagcaaacctcttcatatcttcataaggcaaagaaattggtaa |
20519834 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University