View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19047_low_14 (Length: 254)
Name: NF19047_low_14
Description: NF19047
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19047_low_14 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 162; Significance: 1e-86; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 37 - 254
Target Start/End: Complemental strand, 33705880 - 33705662
Alignment:
| Q |
37 |
aataatggttgagtggtgaaggcttggaacctagatgtatgctctctctaggtttcaaatataaattctactcgtgccaataatttatgtgttagattgg |
136 |
Q |
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| T |
33705880 |
aataatggttgagtggtgaaggcttggaacctagatgtatgctctctctaggtctcaaatataaattctactggtgccaacaatttatgtgttagattgg |
33705781 |
T |
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| Q |
137 |
tctatacatatctttactatagttttaagtggtccctcgttaatagacggtgaaattgattctctata-nnnnnnngaagaagattagtcggcctttagg |
235 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
33705780 |
tctatacatatctttactatagttttaagtggtccctcattaatagacggtgaaattgattctctatattttttttgaagaagattagtcggcctttagg |
33705681 |
T |
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| Q |
236 |
ccaaatgtataatattttt |
254 |
Q |
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|||||| |||||||||| |
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| T |
33705680 |
ccaaattcctaatattttt |
33705662 |
T |
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