View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19047_low_16 (Length: 251)
Name: NF19047_low_16
Description: NF19047
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19047_low_16 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 15 - 251
Target Start/End: Original strand, 12518124 - 12518360
Alignment:
| Q |
15 |
aataatgacacctttgggttctccagttgttccacttgtgtacattattgtgcaaatgtcagtcttcttttttggtggtagatcgcaatccaaacttccc |
114 |
Q |
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| T |
12518124 |
aataatgacacctttgggttctccagttgttccacttgtgtacattattgtgcaaatgtcagtcttcttttttggtggtagatcgcaatccaaacttccc |
12518223 |
T |
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| Q |
115 |
taaagaaagaaaggaagataactaagaagtgagaatgttgaatcaaaattgttcatgctccttatttgaatacaaataggcagatgaaaacatggtttat |
214 |
Q |
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| T |
12518224 |
taaagaaagaaaggaagataactaagaagtgagaatgttgaatcaaaattgttcatgctccttatttgaatacaaataggcagatgaaaacatggtttat |
12518323 |
T |
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| Q |
215 |
ggttttcaattctgtccgcaaacgcaattgtagccac |
251 |
Q |
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| T |
12518324 |
ggttttaaattctgtccgcaaacgcaattgtagccac |
12518360 |
T |
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Target: chr4 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 15 - 115
Target Start/End: Original strand, 25748274 - 25748374
Alignment:
| Q |
15 |
aataatgacacctttgggttctccagttgttccacttgtgtacattattgtgcaaatgtcagtcttcttttttggtggtagatcgcaatccaaacttccc |
114 |
Q |
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||||| ||||||||| ||||| ||||| ||||||||||||||||| |||||||| |||| |||||| ||||| ||||||||| |||||| ||||||| |
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| T |
25748274 |
aataacgacaccttttggttcaccagtagttccacttgtgtacatgattgtgcagatgttagtcttatttttcaatggtagatccaaatccagacttccc |
25748373 |
T |
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| Q |
115 |
t |
115 |
Q |
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| T |
25748374 |
t |
25748374 |
T |
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