View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19047_low_2 (Length: 807)

Name: NF19047_low_2
Description: NF19047
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19047_low_2
NF19047_low_2
[»] chr5 (8 HSPs)
chr5 (453-626)||(40684732-40684905)
chr5 (21-140)||(40684616-40684736)
chr5 (627-797)||(21249362-21249532)
chr5 (52-206)||(40679516-40679670)
chr5 (693-743)||(21249511-21249561)
chr5 (22-86)||(40675657-40675722)
chr5 (711-757)||(21249579-21249625)
chr5 (629-674)||(21249633-21249678)
[»] chr1 (16 HSPs)
chr1 (625-797)||(10824546-10824718)
chr1 (626-797)||(22683140-22683311)
chr1 (629-757)||(37189565-37189693)
chr1 (644-797)||(18844476-18844629)
chr1 (625-758)||(19056367-19056500)
chr1 (625-745)||(18844677-18844798)
chr1 (627-752)||(37189368-37189492)
chr1 (628-758)||(15825737-15825865)
chr1 (627-758)||(19056150-19056281)
chr1 (642-755)||(10824383-10824496)
chr1 (670-758)||(22683357-22683445)
chr1 (693-745)||(22683290-22683342)
chr1 (693-746)||(10824514-10824567)
chr1 (693-734)||(19056307-19056348)
chr1 (693-743)||(18844608-18844658)
chr1 (693-738)||(37189496-37189541)
[»] chr2 (21 HSPs)
chr2 (627-797)||(16973064-16973234)
chr2 (626-795)||(2916377-2916545)
chr2 (629-797)||(44594415-44594583)
chr2 (645-797)||(38982734-38982886)
chr2 (625-745)||(44594246-44594367)
chr2 (626-757)||(40987656-40987787)
chr2 (626-758)||(16973280-16973412)
chr2 (625-738)||(11533680-11533794)
chr2 (652-797)||(24125836-24125975)
chr2 (618-757)||(13559519-13559657)
chr2 (627-758)||(38982557-38982688)
chr2 (630-758)||(2916593-2916721)
chr2 (633-786)||(40987834-40987987)
chr2 (652-757)||(24126146-24126245)
chr2 (627-694)||(24125670-24125737)
chr2 (693-746)||(16973213-16973266)
chr2 (693-746)||(44594383-44594436)
chr2 (680-757)||(13559357-13559434)
chr2 (693-746)||(38982702-38982755)
chr2 (693-738)||(2916526-2916571)
chr2 (693-738)||(24125812-24125857)
[»] chr8 (17 HSPs)
chr8 (626-758)||(13884488-13884620)
chr8 (625-797)||(42126380-42126553)
chr8 (627-756)||(13884706-13884835)
chr8 (626-797)||(29714541-29714712)
chr8 (645-758)||(2554066-2554179)
chr8 (627-757)||(42126601-42126731)
chr8 (625-758)||(11867898-11868030)
chr8 (627-738)||(29714778-29714889)
chr8 (626-724)||(43416262-43416360)
chr8 (676-755)||(14996678-14996758)
chr8 (696-746)||(2554002-2554052)
chr8 (693-738)||(14996608-14996653)
chr8 (666-758)||(15862540-15862632)
chr8 (693-746)||(29714691-29714744)
chr8 (645-753)||(26745959-26746067)
chr8 (645-753)||(26745281-26745389)
chr8 (693-738)||(42126532-42126577)
[»] scaffold0060 (1 HSPs)
scaffold0060 (626-758)||(22921-23053)
[»] chr7 (17 HSPs)
chr7 (625-757)||(28715640-28715772)
chr7 (625-738)||(30862216-30862329)
chr7 (625-758)||(28715858-28715991)
chr7 (626-758)||(41985909-41986041)
chr7 (618-758)||(6474271-6474412)
chr7 (625-797)||(6474458-6474629)
chr7 (644-757)||(47373679-47373792)
chr7 (630-758)||(30862436-30862564)
chr7 (627-797)||(47373462-47373633)
chr7 (626-699)||(41986183-41986256)
chr7 (645-753)||(38408121-38408229)
chr7 (645-753)||(6271188-6271296)
chr7 (693-743)||(41986058-41986108)
chr7 (645-734)||(6270237-6270326)
chr7 (693-738)||(47373612-47373657)
chr7 (625-681)||(22226665-22226721)
chr7 (645-753)||(38407450-38407558)
[»] chr3 (13 HSPs)
chr3 (626-758)||(51663466-51663598)
chr3 (629-797)||(46003425-46003593)
chr3 (626-757)||(40244624-40244756)
chr3 (627-797)||(51663250-51663420)
chr3 (626-757)||(20537925-20538056)
chr3 (628-758)||(20538150-20538280)
chr3 (620-758)||(46003241-46003379)
chr3 (630-738)||(40364194-40364301)
chr3 (626-758)||(40364040-40364172)
chr3 (626-689)||(40244873-40244936)
chr3 (693-746)||(46003393-46003446)
chr3 (693-738)||(20538076-20538121)
chr3 (693-738)||(51663399-51663444)
[»] scaffold0781 (1 HSPs)
scaffold0781 (627-738)||(5271-5382)
[»] chr6 (15 HSPs)
chr6 (627-738)||(2216814-2216925)
chr6 (626-758)||(24798624-24798756)
chr6 (625-753)||(24798843-24798971)
chr6 (632-797)||(11643754-11643919)
chr6 (627-796)||(18494911-18495079)
chr6 (625-721)||(24690353-24690449)
chr6 (625-738)||(11643985-11644097)
chr6 (625-757)||(18494732-18494862)
chr6 (629-713)||(24690607-24690691)
chr6 (693-738)||(11643898-11643943)
chr6 (645-734)||(9954825-9954914)
chr6 (645-753)||(9955590-9955698)
chr6 (692-744)||(24798770-24798822)
chr6 (693-746)||(18494878-18494931)
chr6 (693-746)||(24690504-24690557)
[»] chr4 (13 HSPs)
chr4 (625-758)||(39161286-39161419)
chr4 (614-758)||(39161503-39161647)
chr4 (619-758)||(55173469-55173608)
chr4 (626-738)||(50509364-50509476)
chr4 (625-758)||(47097016-47097146)
chr4 (627-746)||(55173334-55173454)
chr4 (625-757)||(47096798-47096928)
chr4 (630-738)||(37996068-37996176)
chr4 (627-674)||(2623451-2623498)
chr4 (645-728)||(9738136-9738219)
chr4 (693-746)||(47096947-47097001)
chr4 (693-745)||(39161436-39161488)
chr4 (645-719)||(9738937-9739011)
[»] scaffold0034 (1 HSPs)
scaffold0034 (679-743)||(108047-108111)
[»] scaffold0036 (1 HSPs)
scaffold0036 (644-753)||(61042-61151)


Alignment Details
Target: chr5 (Bit Score: 162; Significance: 5e-86; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 162; E-Value: 5e-86
Query Start/End: Original strand, 453 - 626
Target Start/End: Original strand, 40684732 - 40684905
Alignment:
Q  453 tgttattccacaatagaaatatcgtcatccatttgaaacttattcttccaaatttgtctgtatattctagtaactgttcaatcagtggcacgagataagg 552  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||    
T  40684732 tgttattgcacaatagaaatatcgtcatccatttgaaacttattcttccaaatttgtttgtatattttagtaactgttcaatcagtggcacgagataagg 40684831  T
Q  553 ccacaccacgccataaattacactgaaaaattaccatgaggaagtataaaagtgattttttattataaaaagta 626  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40684832 ccacaccacgccataaattacactgaaaaattaccatgaggaagtataaaagtgattttttattataaaaagta 40684905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 113; E-Value: 9e-57
Query Start/End: Original strand, 21 - 140
Target Start/End: Original strand, 40684616 - 40684736
Alignment:
Q  21 ccagggagttatggtccaa-cacggactgggtggtttataggaacaccttcgccaagcgaagctgaaacaagaggtaccttataaacaagagttgtcgaa 119  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40684616 ccagggagttatggtccaagcacggactgggtggtttataggaacaccttcgccaagcgaagctgaaacaagaggtaccttataaacaagagttgtcgaa 40684715  T
Q  120 gaagaattacattccgtgtta 140  Q
    |||||||||||||||||||||    
T  40684716 gaagaattacattccgtgtta 40684736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 627 - 797
Target Start/End: Original strand, 21249362 - 21249532
Alignment:
Q  627 ggcttattcaatcatccggtcccttaacttaattaattgtctcaatttagtcccctaactataatttgtaccaatttggtcccctatgttttgcttcgtt 726  Q
    |||||||||||||| | ||||||||| | ||||| ||||||||||||| ||||||||| ||||| |||||||||||| ||||||||||||||||||||||    
T  21249362 ggcttattcaatcacctggtcccttaccgtaattgattgtctcaatttggtcccctaattataaattgtaccaatttagtcccctatgttttgcttcgtt 21249461  T
Q  727 actagttttagttctttctggtagtttctctcnnnnnnntgttaacttatgtatcaatttggtcccctatg 797  Q
    |||||||||| | ||||||| |||||||||||       |||||||||||||| |||||||||||| ||||    
T  21249462 actagttttaatcctttctgttagtttctctcaaaaaaatgttaacttatgtaccaatttggtcccttatg 21249532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 52 - 206
Target Start/End: Original strand, 40679516 - 40679670
Alignment:
Q  52 ggtttataggaacaccttcgccaagcgaagctgaaacaagaggtaccttataaacaagagttgtcgaagaagaattacattccgtgttagccaagatatc 151  Q
    ||||||||||||||||||||||||| |||||||||  ||||||||  ||||||||||||||| ||  |||| || | |||  | ||||| ||||||||||    
T  40679516 ggtttataggaacaccttcgccaagtgaagctgaagaaagaggtagattataaacaagagttttcatagaaaaagtgcatctcatgttatccaagatatc 40679615  T
Q  152 aacacattcatttgcttctcaatacacatgagatatctcaacattctacaataac 206  Q
    |||||||| |||||||||||||||||| |||||||| ||||||| |||| |||||    
T  40679616 aacacatttatttgcttctcaatacacttgagatatttcaacatgctactataac 40679670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 693 - 743
Target Start/End: Original strand, 21249511 - 21249561
Alignment:
Q  693 tgtaccaatttggtcccctatgttttgcttcgttactagttttagttcttt 743  Q
    ||||||||||||||||| |||||||||||  ||||||||||||||| ||||    
T  21249511 tgtaccaatttggtcccttatgttttgctctgttactagttttagtccttt 21249561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 86
Target Start/End: Original strand, 40675657 - 40675722
Alignment:
Q  22 cagggagttatggtccaa-cacggactgggtggtttataggaacaccttcgccaagcgaagctgaa 86  Q
    |||||||||||||||||| |||||| |  ||||||| ||||||||||||||||| | |||||||||    
T  40675657 cagggagttatggtccaagcacggaatatgtggtttgtaggaacaccttcgccatgtgaagctgaa 40675722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 711 - 757
Target Start/End: Complemental strand, 21249625 - 21249579
Alignment:
Q  711 tatgttttgcttcgttactagttttagttctttctggtagtttctct 757  Q
    ||||||||||| ||||| |||||||||| ||||||| ||||||||||    
T  21249625 tatgttttgctccgttattagttttagtcctttctgttagtttctct 21249579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 629 - 674
Target Start/End: Complemental strand, 21249678 - 21249633
Alignment:
Q  629 cttattcaatcatccggtcccttaacttaattaattgtctcaattt 674  Q
    ||||||||||||||  |||||||||||||||| ||||||| |||||    
T  21249678 cttattcaatcatcttgtcccttaacttaattgattgtcttaattt 21249633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 120; Significance: 6e-61; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 120; E-Value: 6e-61
Query Start/End: Original strand, 625 - 797
Target Start/End: Complemental strand, 10824718 - 10824546
Alignment:
Q  625 taggcttattcaatcatccggtcccttaacttaattaattgtctcaatttagtcccctaactataatttgtaccaatttggtcccctatgttttgcttcg 724  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||    
T  10824718 taggcttattcaatcatccggtcccttaacttaattgattgtctcaatttggtcccctaactataatttgtatcaatttggtcccctatgttttgcttcg 10824619  T
Q  725 ttactagttttagttctttctggtagtttctctcnnnnnnntgttaacttatgtatcaatttggtcccctatg 797  Q
    |||||||||||||| |||||| ||||||||||||        ||||||||||||| ||||||| |||||||||    
T  10824618 ttactagttttagtcctttctagtagtttctctcaaaaaaacgttaacttatgtaccaatttgatcccctatg 10824546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 626 - 797
Target Start/End: Original strand, 22683140 - 22683311
Alignment:
Q  626 aggcttattcaatcatccggtcccttaacttaattaattgtctcaatttagtcccctaactataatttgtaccaatttggtcccctatgttttgcttcgt 725  Q
    ||||||||||||||| ||| ||| ||||||||||| ||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||| ||    
T  22683140 aggcttattcaatcacccgctcctttaacttaattgattgtctcaatttggtcccctaactataatttgtatcaatttggtcccctatgttttgctttgt 22683239  T
Q  726 tactagttttagttctttctggtagtttctctcnnnnnnntgttaacttatgtatcaatttggtcccctatg 797  Q
    ||||||||||||| ||||||| |||||||||||        ||||||||||||| |||||||||||||||||    
T  22683240 tactagttttagtcctttctgttagtttctctcaaaaaaacgttaacttatgtaccaatttggtcccctatg 22683311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 629 - 757
Target Start/End: Complemental strand, 37189693 - 37189565
Alignment:
Q  629 cttattcaatcatccggtcccttaacttaattaattgtctcaatttagtcccctaactataatttgtaccaatttggtcccctatgttttgcttcgttac 728  Q
    |||||||||||| | ||||||||||||||||| ||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  37189693 cttattcaatcacctggtcccttaacttaattgattgtctcaatttggtcccctatctataatttgtaccaatttggtcccctatgttttgcttcgttac 37189594  T
Q  729 tagttttagttctttctggtagtttctct 757  Q
    ||||||||||  |||||||||||||||||    
T  37189593 tagttttagtcatttctggtagtttctct 37189565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 93; E-Value: 7e-45
Query Start/End: Original strand, 644 - 797
Target Start/End: Original strand, 18844476 - 18844629
Alignment:
Q  644 ggtcccttaacttaattaattgtctcaatttagtcccctaactataatttgtaccaatttggtcccctatgttttgcttcgttactagttttagttcttt 743  Q
    ||||||||||||||||| ||| ||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||  |||    
T  18844476 ggtcccttaacttaattgattatctcaatttggtcccctaactataatttgtatcaatttggtcccctatgttttgcttcgttactagttttagtcattt 18844575  T
Q  744 ctggtagtttctctcnnnnnnntgttaacttatgtatcaatttggtcccctatg 797  Q
    |||||||||||||||        || |||||||||| |||||| ||||||||||    
T  18844576 ctggtagtttctctcaaaaaaacgtaaacttatgtaccaatttagtcccctatg 18844629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 625 - 758
Target Start/End: Complemental strand, 19056500 - 19056367
Alignment:
Q  625 taggcttattcaatcatccggtcccttaacttaattaattgtctcaatttagtcccctaactataatttgtaccaatttggtcccctatgttttgcttcg 724  Q
    |||||||||||||||||||||||||||||||||||| ||||| | ||||| |||||||||||||||| ||||||||||||||  |||||||||||||| |    
T  19056500 taggcttattcaatcatccggtcccttaacttaattgattgttttaatttggtcccctaactataatctgtaccaatttggtatcctatgttttgctttg 19056401  T
Q  725 ttactagttttagttctttctggtagtttctctc 758  Q
    ||||||||||||||  ||||||  ||||||||||    
T  19056400 ttactagttttagtcatttctgtcagtttctctc 19056367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 625 - 745
Target Start/End: Complemental strand, 18844798 - 18844677
Alignment:
Q  625 taggcttattcaatcatccggtcccttaacttaattaattgtctcaatttagtc-ccctaactataatttgtaccaatttggtcccctatgttttgcttc 723  Q
    |||||||||||||||| ||| ||||||||||||||| ||||||||||||| ||  |||||||||||||||||| ||||||||||| |||||||||||| |    
T  18844798 taggcttattcaatcacccgatcccttaacttaattgattgtctcaatttggtgtccctaactataatttgtatcaatttggtcctctatgttttgctcc 18844699  T
Q  724 gttactagttttagttctttct 745  Q
    ||||||||||||||||||||||    
T  18844698 gttactagttttagttctttct 18844677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 627 - 752
Target Start/End: Original strand, 37189368 - 37189492
Alignment:
Q  627 ggcttattcaatcatccggtcccttaacttaattaattgtctcaatttagtcccctaactataatttgtaccaatttggtcccctatgttttgcttcgtt 726  Q
    |||||||||||||| ||||||| ||||||||||| ||||||||||||| ||| | ||||||||||||||||||||||||||| |||||||||||| ||||    
T  37189368 ggcttattcaatcacccggtcc-ttaacttaattgattgtctcaatttggtctcataactataatttgtaccaatttggtcctctatgttttgctccgtt 37189466  T
Q  727 actagttttagttctttctggtagtt 752  Q
    |||||||||||| ||||||| |||||    
T  37189467 actagttttagtcctttctgttagtt 37189492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 628 - 758
Target Start/End: Complemental strand, 15825865 - 15825737
Alignment:
Q  628 gcttattcaatcatccggtcccttaacttaattaattgtctcaatttagtcccctaactataatttgtaccaatttggtcccctatgttttgcttcgtta 727  Q
    ||||||||||||| |||||| |||||||||||| ||||||||||||| ||||  ||||||||||||||||||||||||||||||||||||||||| ||||    
T  15825865 gcttattcaatcacccggtctcttaacttaattgattgtctcaatttggtcc--taactataatttgtaccaatttggtcccctatgttttgctttgtta 15825768  T
Q  728 ctagttttagttctttctggtagtttctctc 758  Q
     |||||||||| |||| |  |||||||||||    
T  15825767 ttagttttagtcctttttattagtttctctc 15825737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 627 - 758
Target Start/End: Original strand, 19056150 - 19056281
Alignment:
Q  627 ggcttattcaatcatccggtcccttaacttaattaattgtctcaatttagtcccctaactataatttgtaccaatttggtcccctatgttttgcttcgtt 726  Q
    |||||||||||||| | | ||||||||||||||| ||||| | ||||| ||||||||| ||||||||||| |||||||||||||||| |||||||| |||    
T  19056150 ggcttattcaatcacctgatcccttaacttaattgattgtattaatttggtcccctaattataatttgtatcaatttggtcccctatattttgctttgtt 19056249  T
Q  727 actagttttagttctttctggtagtttctctc 758  Q
    ||||||||||||  |||||| |||||||||||    
T  19056250 actagttttagtcttttctgttagtttctctc 19056281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 642 - 755
Target Start/End: Original strand, 10824383 - 10824496
Alignment:
Q  642 ccggtcccttaacttaattaattgtctcaatttagtcccctaactataatttgtaccaatttggtcccctatgttttgcttcgttactagttttagttct 741  Q
    ||||||| ||||||||||| ||| |  |||||| ||||||||| ||||||||||| ||||||||||| |||||||||||| |||||||||||||||| ||    
T  10824383 ccggtcctttaacttaattgattattgcaatttggtcccctaattataatttgtatcaatttggtcctctatgttttgctccgttactagttttagtcct 10824482  T
Q  742 ttctggtagtttct 755  Q
    ||||| ||||||||    
T  10824483 ttctgttagtttct 10824496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 670 - 758
Target Start/End: Complemental strand, 22683445 - 22683357
Alignment:
Q  670 aatttagtcccctaactataatttgtaccaatttggtcccctatgttttgcttcgttactagttttagttctttctggtagtttctctc 758  Q
    ||||| ||||||||||| | ||||||||||||||||||| |||||||||||| |||||||||||||||| ||||||  |||||||||||    
T  22683445 aatttggtcccctaacttttatttgtaccaatttggtcctctatgttttgctccgttactagttttagtcctttctcttagtttctctc 22683357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 693 - 745
Target Start/End: Original strand, 22683290 - 22683342
Alignment:
Q  693 tgtaccaatttggtcccctatgttttgcttcgttactagttttagttctttct 745  Q
    ||||||||||||||||||||||||||||| |||||||||||||||| ||||||    
T  22683290 tgtaccaatttggtcccctatgttttgctccgttactagttttagtcctttct 22683342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 693 - 746
Target Start/End: Complemental strand, 10824567 - 10824514
Alignment:
Q  693 tgtaccaatttggtcccctatgttttgcttcgttactagttttagttctttctg 746  Q
    |||||||||||| |||||||||||||||| |||| ||||||||||| |||||||    
T  10824567 tgtaccaatttgatcccctatgttttgctccgttcctagttttagtcctttctg 10824514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 693 - 734
Target Start/End: Complemental strand, 19056348 - 19056307
Alignment:
Q  693 tgtaccaatttggtcccctatgttttgcttcgttactagttt 734  Q
    ||||||||||||||||||| ||||||||||||||||||||||    
T  19056348 tgtaccaatttggtcccctgtgttttgcttcgttactagttt 19056307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 693 - 743
Target Start/End: Original strand, 18844608 - 18844658
Alignment:
Q  693 tgtaccaatttggtcccctatgttttgcttcgttactagttttagttcttt 743  Q
    ||||||||||| |||||||||||||| || |||| ||||||||||| ||||    
T  18844608 tgtaccaatttagtcccctatgttttactccgttcctagttttagtccttt 18844658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 693 - 738
Target Start/End: Complemental strand, 37189541 - 37189496
Alignment:
Q  693 tgtaccaatttggtcccctatgttttgcttcgttactagttttagt 738  Q
    |||||||||| |||||||| ||||||||| |||| |||||||||||    
T  37189541 tgtaccaattcggtcccctgtgttttgctccgttcctagttttagt 37189496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 114; Significance: 2e-57; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 627 - 797
Target Start/End: Original strand, 16973064 - 16973234
Alignment:
Q  627 ggcttattcaatcatccggtcccttaacttaattaattgtctcaatttagtcccctaactataatttgtaccaatttggtcccctatgttttgcttcgtt 726  Q
    |||||||||||||| ||||||||||||||||||| ||||||| ||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  16973064 ggcttattcaatcacccggtcccttaacttaattgattgtcttaatttggtcccctaactatagtttgtaccaatttggtcccctatgttttgcttcgtt 16973163  T
Q  727 actagttttagttctttctggtagtttctctcnnnnnnntgttaacttatgtatcaatttggtcccctatg 797  Q
    |||||||||| ||||||||| |||||||||||        ||||||||||||| |||||||||||||||||    
T  16973164 actagttttaattctttctgttagtttctctcataaaaacgttaacttatgtaccaatttggtcccctatg 16973234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 626 - 795
Target Start/End: Original strand, 2916377 - 2916545
Alignment:
Q  626 aggcttattcaatcatccggtcccttaacttaattaattgtctcaatttagtcccctaactataatttgtaccaatttggtcccctatgttttgcttcgt 725  Q
    ||||||||||||||| ||| || |||||||||||| |||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||| ||    
T  2916377 aggcttattcaatcacccgatctcttaacttaattgattgtctcaatttgatcccctaactataatttgtaccaatttggtcccctatgttttgctttgt 2916476  T
Q  726 tactagttttagttctttctggtagtttctctcnnnnnnntgttaacttatgtatcaatttggtccccta 795  Q
    ||||||||||| | ||||||| |||||||||||        ||||||||||||| |||||||||||||||    
T  2916477 tactagttttaatcctttctgttagtttctctcaaaaaac-gttaacttatgtaccaatttggtccccta 2916545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 629 - 797
Target Start/End: Complemental strand, 44594583 - 44594415
Alignment:
Q  629 cttattcaatcatccggtcccttaacttaattaattgtctcaatttagtcccctaactataatttgtaccaatttggtcccctatgttttgcttcgttac 728  Q
    |||||||||||| ||||||| |||| |||||| ||||||||||||| ||||||||||||||||||||| |||||||||||  ||||||||||||||||||    
T  44594583 cttattcaatcacccggtcctttaatttaattgattgtctcaatttggtcccctaactataatttgtatcaatttggtccattatgttttgcttcgttac 44594484  T
Q  729 tagttttagttctttctggtagtttctctcnnnnnnntgttaacttatgtatcaatttggtcccctatg 797  Q
    ||||||||||  ||||||||||||||||||        || |||||||||| |||||| ||||||||||    
T  44594483 tagttttagtcatttctggtagtttctctcaaaaaaacgtaaacttatgtaccaatttagtcccctatg 44594415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 645 - 797
Target Start/End: Complemental strand, 38982886 - 38982734
Alignment:
Q  645 gtcccttaacttaattaattgtctcaatttagtcccctaactataatttgtaccaatttggtcccctatgttttgcttcgttactagttttagttctttc 744  Q
    |||||||||||||||| ||||||||||||| ||||| ||||||||||||||| ||||||||| || ||||||||||||| ||||||||||||||  ||||    
T  38982886 gtcccttaacttaattgattgtctcaatttggtcccttaactataatttgtatcaatttggttccttatgttttgcttcattactagttttagtcatttc 38982787  T
Q  745 tggtagtttctctcnnnnnnntgttaacttatgtatcaatttggtcccctatg 797  Q
    ||||||||||||||        ||||||||||||| |||||||||||| ||||    
T  38982786 tggtagtttctctcaaaaaaacgttaacttatgtaccaatttggtcccttatg 38982734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 625 - 745
Target Start/End: Original strand, 44594246 - 44594367
Alignment:
Q  625 taggcttattcaatcatccggtcccttaacttaattaattgtctcaatttagtc-ccctaactataatttgtaccaatttggtcccctatgttttgcttc 723  Q
    |||||||||||||||| ||||||||||||||||||| ||||||||||||| ||  |||||||||||||||||| ||||||||||| ||||||||||||      
T  44594246 taggcttattcaatcacccggtcccttaacttaattgattgtctcaatttggtgtccctaactataatttgtatcaatttggtcctctatgttttgctct 44594345  T
Q  724 gttactagttttagttctttct 745  Q
    ||||||||||||||||||||||    
T  44594346 gttactagttttagttctttct 44594367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 626 - 757
Target Start/End: Original strand, 40987656 - 40987787
Alignment:
Q  626 aggcttattcaatcatccggtcccttaacttaattaattgtctcaatttagtcccctaactataatttgtaccaatttggtcccctatgttttgcttcgt 725  Q
    ||||||||| ||||||||||||||||||||||||| ||||||||||||| || ||||||||||||||||||||||||| ||| | ||||||||| || ||    
T  40987656 aggcttatttaatcatccggtcccttaacttaattgattgtctcaatttggttccctaactataatttgtaccaatttagtctcatatgttttgatttgt 40987755  T
Q  726 tactagttttagttctttctggtagtttctct 757  Q
    |||||||||||||  ||| || ||||||||||    
T  40987756 tactagttttagtcttttatgttagtttctct 40987787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 626 - 758
Target Start/End: Complemental strand, 16973412 - 16973280
Alignment:
Q  626 aggcttattcaatcatccggtcccttaacttaattaattgtctcaatttagtcccctaactataatttgtaccaatttggtcccctatgttttgcttcgt 725  Q
    |||||||||||||||   ||||||||||||||||| ||||||||||||| ||||||||||||||||||||  ||||||||||| |||||||||||| | |    
T  16973412 aggcttattcaatcacatggtcccttaacttaattgattgtctcaatttggtcccctaactataatttgtgtcaatttggtcctctatgttttgctccat 16973313  T
Q  726 tactagttttagttctttctggtagtttctctc 758  Q
    |||||||||||||  ||||||  ||||||||||    
T  16973312 tactagttttagtcatttctgtcagtttctctc 16973280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 625 - 738
Target Start/End: Complemental strand, 11533794 - 11533680
Alignment:
Q  625 taggcttattcaatcatccggtcccttaacttaattaattgtctcaatttagtcccctaactataatttgtaccaatttggt-cccctatgttttgcttc 723  Q
    |||||||||||||||||| |||| |||||||||| | ||||||||||||| |||||| |||||||||||||||||||||||| ||||||||||||||||     
T  11533794 taggcttattcaatcatcaggtctcttaacttaagtgattgtctcaatttggtcccccaactataatttgtaccaatttggtccccctatgttttgcttt 11533695  T
Q  724 gttactagttttagt 738  Q
     ||||||||||||||    
T  11533694 attactagttttagt 11533680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 652 - 797
Target Start/End: Complemental strand, 24125975 - 24125836
Alignment:
Q  652 aacttaattaattgtctcaatttagtcccctaactataatttgtaccaatttggtcccctatgttttgcttcgttactagttttagttctttctggtagt 751  Q
    ||||||||||||| ||||||||| ||| |||||||||||||||||||||||||||||| |||||||||||      ||||||||||||||||||| ||||    
T  24125975 aacttaattaattttctcaatttggtctcctaactataatttgtaccaatttggtcccttatgttttgct------ctagttttagttctttctgttagt 24125882  T
Q  752 ttctctcnnnnnnntgttaacttatgtatcaatttggtcccctatg 797  Q
    ||||||          ||||||||||||||||||||||||||||||    
T  24125881 ttctctaaaaaaaacattaacttatgtatcaatttggtcccctatg 24125836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 618 - 757
Target Start/End: Complemental strand, 13559657 - 13559519
Alignment:
Q  618 taaaaagtaggcttattcaatcatccggtcccttaacttaattaattgtctcaatttagtcccctaactataatttgtaccaatttggtcccctatgttt 717  Q
    |||||| |||||||||||||||||||||||||||||||||||| ||||| ||||||| || |||||||||||||||||| ||| |||||||| | || ||    
T  13559657 taaaaaataggcttattcaatcatccggtcccttaacttaattgattgtttcaatttggttccctaactataatttgtatcaa-ttggtcccttgtgctt 13559559  T
Q  718 tgcttcgttactagttttagttctttctggtagtttctct 757  Q
    ||||  |||||||| ||||||  ||| || ||||||||||    
T  13559558 tgctctgttactagatttagtcatttatgttagtttctct 13559519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 627 - 758
Target Start/End: Original strand, 38982557 - 38982688
Alignment:
Q  627 ggcttattcaatcatccggtcccttaacttaattaattgtctcaatttagtcccctaactataatttgtaccaatttggtcccctatgttttgcttcgtt 726  Q
    |||||| ||||||| ||| ||| ||||||||||| ||||||||||||| |  |||||||||||||||||||||||||||||   ||||||||||||||||    
T  38982557 ggcttaatcaatcacccgatcctttaacttaattgattgtctcaatttggctccctaactataatttgtaccaatttggtcatttatgttttgcttcgtt 38982656  T
Q  727 actagttttagttctttctggtagtttctctc 758  Q
     ||||||||||| ||||||  ||||| |||||    
T  38982657 gctagttttagtcctttctattagttactctc 38982688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 630 - 758
Target Start/End: Complemental strand, 2916721 - 2916593
Alignment:
Q  630 ttattcaatcatccggtcccttaacttaattaattgtctcaatttagtcccctaactataatttgtaccaatttggtcccctatgttttgcttcgttact 729  Q
    |||||||||||||   | ||||||||||||| ||||||||||||| ||||||||||||| ||||||||||| ||| ||| |||| |||||||  ||||||    
T  2916721 ttattcaatcatctaattccttaacttaattgattgtctcaatttggtcccctaactattatttgtaccaacttgatcctctatattttgctctgttact 2916622  T
Q  730 agttttagttctttctggtagtttctctc 758  Q
    |||||| || ||||||| |||||||||||    
T  2916621 agttttggtcctttctgttagtttctctc 2916593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 633 - 786
Target Start/End: Complemental strand, 40987987 - 40987834
Alignment:
Q  633 ttcaatcatccggtcccttaacttaattaattgtctcaatttagtcccctaactataatttgtaccaatttggtcccctatgttttgcttcgttactagt 732  Q
    |||||||| |||||| ||||||||||||||||||||||||||  ||| ||||||||||||||||  ||||||||||||||| |||||||   || ||| |    
T  40987987 ttcaatcacccggtctcttaacttaattaattgtctcaatttgatcctctaactataatttgtattaatttggtcccctatattttgctctattgctaat 40987888  T
Q  733 tttagttctttctggtagtttctctcnnnnnnntgttaacttatgtatcaattt 786  Q
    ||||||  |||||| |||||||||||        ||||||||||||||||||||    
T  40987887 tttagtcatttctgttagtttctctcaaaaaaccgttaacttatgtatcaattt 40987834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 652 - 757
Target Start/End: Complemental strand, 24126245 - 24126146
Alignment:
Q  652 aacttaattaattgtctcaatttagtcccctaactataatttgtaccaatttggtcccctatgttttgcttcgttactagttttagttctttctggtagt 751  Q
    ||||||||| ||| ||||||||| ||| |||||||||||||||||||||||||||||| |||||||||||      ||||||||||| |||| || ||||    
T  24126245 aacttaattgattttctcaatttggtctcctaactataatttgtaccaatttggtcccttatgttttgct------ctagttttagtcctttatgttagt 24126152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 627 - 694
Target Start/End: Original strand, 24125670 - 24125737
Alignment:
Q  627 ggcttattcaatcatccggtcccttaacttaattaattgtctcaatttagtcccctaactataatttg 694  Q
    |||||||||| ||| ||||||||||||||||||| |||||||||||||  ||||||||||||||||||    
T  24125670 ggcttattcactcaaccggtcccttaacttaattgattgtctcaatttgatcccctaactataatttg 24125737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 693 - 746
Target Start/End: Original strand, 16973213 - 16973266
Alignment:
Q  693 tgtaccaatttggtcccctatgttttgcttcgttactagttttagttctttctg 746  Q
    ||||||||||||||||||||||||||||| |||||||||||||||| |||||||    
T  16973213 tgtaccaatttggtcccctatgttttgctccgttactagttttagtcctttctg 16973266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 693 - 746
Target Start/End: Complemental strand, 44594436 - 44594383
Alignment:
Q  693 tgtaccaatttggtcccctatgttttgcttcgttactagttttagttctttctg 746  Q
    ||||||||||| ||||||||||||||||| |||| ||||||||||| |||||||    
T  44594436 tgtaccaatttagtcccctatgttttgctccgttcctagttttagtcctttctg 44594383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 680 - 757
Target Start/End: Original strand, 13559357 - 13559434
Alignment:
Q  680 cctaactataatttgtaccaatttggtcccctatgttttgcttcgttactagttttagttctttctggtagtttctct 757  Q
    ||||||||||||||||  |||||||||| | ||| ||||| || |||| ||||||||||  |||||| ||||||||||    
T  13559357 cctaactataatttgtttcaatttggtctcatatattttgttttgttattagttttagtcatttctgttagtttctct 13559434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 693 - 746
Target Start/End: Complemental strand, 38982755 - 38982702
Alignment:
Q  693 tgtaccaatttggtcccctatgttttgcttcgttactagttttagttctttctg 746  Q
    ||||||||||||||||| ||||||||||| |||| || |||||||| |||||||    
T  38982755 tgtaccaatttggtcccttatgttttgctccgttcctggttttagtcctttctg 38982702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 693 - 738
Target Start/End: Original strand, 2916526 - 2916571
Alignment:
Q  693 tgtaccaatttggtcccctatgttttgcttcgttactagttttagt 738  Q
    ||||||||||||||||||||  ||||||| ||||| ||||||||||    
T  2916526 tgtaccaatttggtcccctacattttgctccgttattagttttagt 2916571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 693 - 738
Target Start/End: Complemental strand, 24125857 - 24125812
Alignment:
Q  693 tgtaccaatttggtcccctatgttttgcttcgttactagttttagt 738  Q
    |||| ||||||||||||||||||||||||  |||| ||||||||||    
T  24125857 tgtatcaatttggtcccctatgttttgctctgttattagttttagt 24125812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 109; Significance: 2e-54; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 626 - 758
Target Start/End: Original strand, 13884488 - 13884620
Alignment:
Q  626 aggcttattcaatcatccggtcccttaacttaattaattgtctcaatttagtcccctaactataatttgtaccaatttggtcccctatgttttgcttcgt 725  Q
    ||||||||||||||| ||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||    
T  13884488 aggcttattcaatcacccggtcccttaacttaattgattgtctcaatttggtcccctaactataatttgtaccaatttggccccctatgttttgcttcgt 13884587  T
Q  726 tactagttttagttctttctggtagtttctctc 758  Q
    |||||||||||||  ||||||||||||||||||    
T  13884588 tactagttttagtcttttctggtagtttctctc 13884620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 105; E-Value: 5e-52
Query Start/End: Original strand, 625 - 797
Target Start/End: Original strand, 42126380 - 42126553
Alignment:
Q  625 taggcttattcaatcatccggtcccttaacttaattaattgtctcaatttagtcccctaactataatttgtaccaatttggtcccctatgttttgcttcg 724  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||  | | |||||||||||||||| |||||||| ||||||||||||||||||    
T  42126380 taggcttattcaatcacccggtcccttaacttaattaattgtctcaatttgattctctaactataatttgtatcaatttggccccctatgttttgcttcg 42126479  T
Q  725 ttactagttttagttctttctggtagtttctct-cnnnnnnntgttaacttatgtatcaatttggtcccctatg 797  Q
     ||||||||||||| |||||||||||||||||| |        |||||||||||||||||||||||||||||||    
T  42126480 ctactagttttagtcctttctggtagtttctctacaaaaaaacgttaacttatgtatcaatttggtcccctatg 42126553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 627 - 756
Target Start/End: Complemental strand, 13884835 - 13884706
Alignment:
Q  627 ggcttattcaatcatccggtcccttaacttaattaattgtctcaatttagtcccctaactataatttgtaccaatttggtcccctatgttttgcttcgtt 726  Q
    |||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  13884835 ggcttattcaatcacccggtcccttaacttaattgattgtctcaatttagtcccctaactataatttgtaccaatttggtcctctatgttttgcttcgtt 13884736  T
Q  727 actagttttagttctttctggtagtttctc 756  Q
    ||| |||||||| |||| || |||||||||    
T  13884735 actggttttagtcctttttgttagtttctc 13884706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 626 - 797
Target Start/End: Original strand, 29714541 - 29714712
Alignment:
Q  626 aggcttattcaatcatccggtcccttaacttaattaattgtctcaatttagtcccctaactataatttgtaccaatttggtcccctatgttttgcttcgt 725  Q
    ||||||||||||||| ||||||||||||||||||| ||||||||||||| |||||| ||||||| ||||||||||||||||||||||| |||||||| ||    
T  29714541 aggcttattcaatcacccggtcccttaacttaattgattgtctcaatttggtccccaaactatagtttgtaccaatttggtcccctatattttgctttgt 29714640  T
Q  726 tactagttttagttctttctggtagtttctctcnnnnnnntgttaacttatgtatcaatttggtcccctatg 797  Q
    |||||| |||| |  |||||| |||||||||||        ||||||||||||| |||||||||| ||||||    
T  29714641 tactagctttaatcatttctgttagtttctctcgtaaaaacgttaacttatgtaccaatttggtctcctatg 29714712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 645 - 758
Target Start/End: Complemental strand, 2554179 - 2554066
Alignment:
Q  645 gtcccttaacttaattaattgtctcaatttagtcccctaactataatttgtaccaatttggtcccctatgttttgcttcgttactagttttagttctttc 744  Q
    |||||||||||||||| |||||||||||||  ||||||||||||||||||| ||||||||||| |||||||||||||| |||||| ||||||||||||||    
T  2554179 gtcccttaacttaattgattgtctcaatttgatcccctaactataatttgttccaatttggtctcctatgttttgctttgttacttgttttagttctttc 2554080  T
Q  745 tggtagtttctctc 758  Q
    || |||||||||||    
T  2554079 tgttagtttctctc 2554066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 627 - 757
Target Start/End: Complemental strand, 42126731 - 42126601
Alignment:
Q  627 ggcttattcaatcatccggtcccttaacttaattaattgtctcaatttagtcccctaactataatttgtaccaatttggtcccctatgttttgcttcgtt 726  Q
    |||||||||||||| ||||||||||||||||||| ||| |||||||||  |||||||||||||||||||||||||||||||| ||| ||||||||  ||     
T  42126731 ggcttattcaatcacccggtcccttaacttaattgattatctcaatttgatcccctaactataatttgtaccaatttggtcctctaagttttgctctgtc 42126632  T
Q  727 actagttttagttctttctggtagtttctct 757  Q
    |||| |||||||  |||||| ||||||||||    
T  42126631 actaattttagtcatttctgttagtttctct 42126601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 625 - 758
Target Start/End: Complemental strand, 11868030 - 11867898
Alignment:
Q  625 taggcttattcaatcatccggtcccttaacttaattaattgtctcaatttagtcccctaactataatttgtaccaatttggtcccctatgttttgcttcg 724  Q
    |||||||||||||||| | ||||| ||||||||||| ||||||||||||| || || ||||||||||||||| ||||||||||| |||||||||| || |    
T  11868030 taggcttattcaatcacctggtcc-ttaacttaattgattgtctcaatttggttccttaactataatttgtatcaatttggtcctctatgttttgatttg 11867932  T
Q  725 ttactagttttagttctttctggtagtttctctc 758  Q
    | |||||||||||| |||| || |||||||||||    
T  11867931 tcactagttttagtcctttatgttagtttctctc 11867898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 627 - 738
Target Start/End: Complemental strand, 29714889 - 29714778
Alignment:
Q  627 ggcttattcaatcatccggtcccttaacttaattaattgtctcaatttagtcccctaactataatttgtaccaatttggtcccctatgttttgcttcgtt 726  Q
    ||||||||  |||| | ||||||||||||||||| ||||| | ||||| ||||| ||||||||||||||| ||||||||||| |||||||||||||| ||    
T  29714889 ggcttatttgatcacctggtcccttaacttaattgattgttttaatttggtcccttaactataatttgtatcaatttggtcctctatgttttgcttcatt 29714790  T
Q  727 actagttttagt 738  Q
    ||||||||||||    
T  29714789 actagttttagt 29714778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 626 - 724
Target Start/End: Original strand, 43416262 - 43416360
Alignment:
Q  626 aggcttattcaatcatccggtcccttaacttaattaattgtctcaatttagtcccctaactataatttgtaccaatttggtcccctatgttttgcttcg 724  Q
    |||||||||||||||| ||||| |||||||||||| ||||||| |||||| |||||||||||||||||||| ||||||  || ||||||||||| ||||    
T  43416262 aggcttattcaatcattcggtctcttaacttaattgattgtcttaatttaatcccctaactataatttgtatcaatttaatctcctatgttttgtttcg 43416360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 676 - 755
Target Start/End: Complemental strand, 14996758 - 14996678
Alignment:
Q  676 gtcccctaactataatttgtaccaatttggtcccc-tatgttttgcttcgttactagttttagttctttctggtagtttct 755  Q
    ||||||||| ||||||||||||||||||| ||||| |||||||||||| ||||||||||||||| ||||||| ||||||||    
T  14996758 gtcccctaattataatttgtaccaatttgatccccctatgttttgctttgttactagttttagtcctttctgttagtttct 14996678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 696 - 746
Target Start/End: Original strand, 2554002 - 2554052
Alignment:
Q  696 accaatttggtcccctatgttttgcttcgttactagttttagttctttctg 746  Q
    ||||||||||||||||||||||| ||||||||||||||||||| |||||||    
T  2554002 accaatttggtcccctatgttttacttcgttactagttttagtcctttctg 2554052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 693 - 738
Target Start/End: Original strand, 14996608 - 14996653
Alignment:
Q  693 tgtaccaatttggtcccctatgttttgcttcgttactagttttagt 738  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||    
T  14996608 tgtactaatttggtcccctatgttttgcttcgttactagttttagt 14996653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 666 - 758
Target Start/End: Complemental strand, 15862632 - 15862540
Alignment:
Q  666 tctcaatttagtcccctaactataatttgtaccaatttggtcccctatgttttgcttcgttactagttttagttctttctggtagtttctctc 758  Q
    |||||||||  ||||||||||||||||||||  |||||||||| ||||| |||||| ||||||| |||||| | |||||   |||||||||||    
T  15862632 tctcaatttgatcccctaactataatttgtattaatttggtcctctatgatttgctccgttactggttttaatactttccattagtttctctc 15862540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 693 - 746
Target Start/End: Original strand, 29714691 - 29714744
Alignment:
Q  693 tgtaccaatttggtcccctatgttttgcttcgttactagttttagttctttctg 746  Q
    ||||||||||||||| |||||||||| || |||||||||||||||| |||||||    
T  29714691 tgtaccaatttggtctcctatgttttactccgttactagttttagtcctttctg 29714744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 645 - 753
Target Start/End: Complemental strand, 26746067 - 26745959
Alignment:
Q  645 gtcccttaacttaattaattgtctcaatttagtcccctaactataatttgtaccaatttggtcccctatgttttgcttcgttactagttttagttctttc 744  Q
    ||||||||||||| ||  |||| |||| || ||||||||| ||||||||||||||| || |||| ||| |||||||| | |||| |||||  || |||||    
T  26746067 gtcccttaacttatttgtttgtatcaaattggtcccctaaatataatttgtaccaaattcgtcctctaagttttgctccattaccagtttcggtcctttc 26745968  T
Q  745 tggtagttt 753  Q
    || ||||||    
T  26745967 tgttagttt 26745959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 645 - 753
Target Start/End: Original strand, 26745281 - 26745389
Alignment:
Q  645 gtcccttaacttaattaattgtctcaatttagtcccctaactataatttgtaccaatttggtcccctatgttttgcttcgttactagttttagttctttc 744  Q
    ||||||||||||||||  ||||   || || ||||||||| ||||||||||||||| || |||| ||| ||||||||  ||||| |||||  || |||||    
T  26745281 gtcccttaacttaattgtttgtactaaattggtcccctaaatataatttgtaccaaattcgtcctctaagttttgctctgttaccagtttcggtcctttc 26745380  T
Q  745 tggtagttt 753  Q
    || ||||||    
T  26745381 tgttagttt 26745389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 693 - 738
Target Start/End: Original strand, 42126532 - 42126577
Alignment:
Q  693 tgtaccaatttggtcccctatgttttgcttcgttactagttttagt 738  Q
    |||| |||||||||||||||||||||||| ||||  ||||||||||    
T  42126532 tgtatcaatttggtcccctatgttttgctccgttcttagttttagt 42126577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0060 (Bit Score: 97; Significance: 3e-47; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 626 - 758
Target Start/End: Complemental strand, 23053 - 22921
Alignment:
Q  626 aggcttattcaatcatccggtcccttaacttaattaattgtctcaatttagtcccctaactataatttgtaccaatttggtcccctatgttttgcttcgt 725  Q
    ||||||||||||||| ||||||||||||||||||| ||||||| ||||| ||||||||||||||||||||||||||||| ||| |||||||||||| |||    
T  23053 aggcttattcaatcacccggtcccttaacttaattgattgtcttaatttggtcccctaactataatttgtaccaatttgatcctctatgttttgctccgt 22954  T
Q  726 tactagttttagttctttctggtagtttctctc 758  Q
    ||||||||||||| ||||||| |||||||||||    
T  22953 tactagttttagtcctttctgttagtttctctc 22921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 97; Significance: 3e-47; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 625 - 757
Target Start/End: Original strand, 28715640 - 28715772
Alignment:
Q  625 taggcttattcaatcatccggtcccttaacttaattaattgtctcaatttagtcccctaactataatttgtaccaatttggtcccctatgttttgcttcg 724  Q
    |||| ||||||||||| ||||||||||||||||||||||||| | ||||| ||  ||||||||||||||||| |||||||||||||||||||||||||||    
T  28715640 taggtttattcaatcacccggtcccttaacttaattaattgttttaatttggtttcctaactataatttgtatcaatttggtcccctatgttttgcttcg 28715739  T
Q  725 ttactagttttagttctttctggtagtttctct 757  Q
    |||||||||||||| ||||||||||||||||||    
T  28715740 ttactagttttagtcctttctggtagtttctct 28715772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 90; E-Value: 5e-43
Query Start/End: Original strand, 625 - 738
Target Start/End: Original strand, 30862216 - 30862329
Alignment:
Q  625 taggcttattcaatcatccggtcccttaacttaattaattgtctcaatttagtcccctaactataatttgtaccaatttggtcccctatgttttgcttcg 724  Q
    ||||||||||||||||| |||||||||||||||||| ||||||| ||||| |||||||||||||||||||||||||||||||||||||| |||||||| |    
T  30862216 taggcttattcaatcattcggtcccttaacttaattgattgtctgaatttggtcccctaactataatttgtaccaatttggtcccctatattttgctttg 30862315  T
Q  725 ttactagttttagt 738  Q
    ||||||||||||||    
T  30862316 ttactagttttagt 30862329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 625 - 758
Target Start/End: Complemental strand, 28715991 - 28715858
Alignment:
Q  625 taggcttattcaatcatccggtcccttaacttaattaattgtctcaatttagtcccctaactataatttgtaccaatttggtcccctatgttttgcttcg 724  Q
    |||||||||||||| | ||||||||||||||||||| ||||||| ||||| ||||||||||||||||||||||||||||||||| ||| ||||||||  |    
T  28715991 taggcttattcaattacccggtcccttaacttaattgattgtcttaatttggtcccctaactataatttgtaccaatttggtcctctaagttttgctcag 28715892  T
Q  725 ttactagttttagttctttctggtagtttctctc 758  Q
    | ||||||||||||  |||||| |||||||||||    
T  28715891 tcactagttttagtcatttctgttagtttctctc 28715858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 626 - 758
Target Start/End: Original strand, 41985909 - 41986041
Alignment:
Q  626 aggcttattcaatcatccggtcccttaacttaattaattgtctcaatttagtcccctaactataatttgtaccaatttggtcccctatgttttgcttcgt 725  Q
    ||||||||||||||| || |||||||||||||||| |||||||||||||  |||||||||||||||||||  |||||||||||| |||||||||||| ||    
T  41985909 aggcttattcaatcacccagtcccttaacttaattgattgtctcaatttgatcccctaactataatttgtttcaatttggtcccatatgttttgctttgt 41986008  T
Q  726 tactagttttagttctttctggtagtttctctc 758  Q
    ||||| ||||||| ||||| | |||||||||||    
T  41986009 tactaattttagtcctttccgttagtttctctc 41986041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 618 - 758
Target Start/End: Original strand, 6474271 - 6474412
Alignment:
Q  618 taaaaagtaggcttattcaatcatccggtcccttaacttaattaattgtctcaatttagtcccctaactataatttgtaccaatttggtcccctatg-tt 716  Q
    |||||| || ||||||||||| | | | ||||||||||||||| |||||||||||||  ||||||||||||||||| || ||||||||||||||||| ||    
T  6474271 taaaaattatgcttattcaattaccggatcccttaacttaattgattgtctcaatttgatcccctaactataatttatatcaatttggtcccctatgttt 6474370  T
Q  717 ttgcttcgttactagttttagttctttctggtagtttctctc 758  Q
    |||||| |||||||||||||||  |||||| |||||||||||    
T  6474371 ttgctttgttactagttttagtcttttctgttagtttctctc 6474412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 625 - 797
Target Start/End: Complemental strand, 6474629 - 6474458
Alignment:
Q  625 taggcttattcaatcatccggtcccttaacttaattaattgtctcaatttagtcccctaactataatttgtaccaatttggtcccctatgttttgcttcg 724  Q
    |||||||||||||||| ||| ||||||||||||||| ||||||| ||||| ||| ||||||||||| ||||||| ||||| |||| |||| ||||||  |    
T  6474629 taggcttattcaatcacccgatcccttaacttaattgattgtcttaatttggtctcctaactataa-ttgtaccgatttgctcccttatgctttgctctg 6474531  T
Q  725 ttactagttttagttctttctggtagtttctctcnnnnnnntgttaacttatgtatcaatttggtcccctatg 797  Q
    |||||||||||||| |||| || |||||||||||        ||||||||||||| |||||||||||| ||||    
T  6474530 ttactagttttagtcctttatgttagtttctctcaaaaaaacgttaacttatgtaccaatttggtcccttatg 6474458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 644 - 757
Target Start/End: Complemental strand, 47373792 - 47373679
Alignment:
Q  644 ggtcccttaacttaattaattgtctcaatttagtcccctaactataatttgtaccaatttggtcccctatgttttgcttcgttactagttttagttcttt 743  Q
    ||||||||||||||||| ||||||||||||| ||||||||| |||||||||||||||||| ||| | ||||||||| |  ||||||||||||| | ||||    
T  47373792 ggtcccttaacttaattgattgtctcaatttggtcccctaattataatttgtaccaatttagtctcatatgttttgatgtgttactagttttaatccttt 47373693  T
Q  744 ctggtagtttctct 757  Q
     || ||||||||||    
T  47373692 atgttagtttctct 47373679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 630 - 758
Target Start/End: Complemental strand, 30862564 - 30862436
Alignment:
Q  630 ttattcaatcatccggtcccttaacttaattaattgtctcaatttagtcccctaactataatttgtaccaatttggtcccctatgttttgcttcgttact 729  Q
    |||||||||||   |||||||||| | |||| ||||| ||||||| || |||||||||||||||||| |||||||||||| |||||||||||  ||||||    
T  30862564 ttattcaatcaattggtcccttaattgaattgattgtttcaattttgttccctaactataatttgtatcaatttggtcccttatgttttgctctgttact 30862465  T
Q  730 agttttagttctttctggtagtttctctc 758  Q
    | |||||||  |||||| |||||||||||    
T  30862464 aattttagtcttttctgttagtttctctc 30862436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 627 - 797
Target Start/End: Original strand, 47373462 - 47373633
Alignment:
Q  627 ggcttattcaatcatccggtcccttaacttaattaattgtctcaatttagtcccctaactata--atttgtaccaatttggtcccctatgttttgcttcg 724  Q
    ||||||||||||||  || || |||||||||||| |||||||||||||  ||| |||| ||||  ||||||||||||||||||||||||||||||||  |    
T  47373462 ggcttattcaatcactcgatctcttaacttaattgattgtctcaatttgatcctctaattatataatttgtaccaatttggtcccctatgttttgctctg 47373561  T
Q  725 ttactagttttagttctttctggtagtttctctcnnnnnnntgttaacttatgtatcaatttggtcccctatg 797  Q
    || |||||||||||  ||| || |||||||||||        ||||||||||||| |||||| ||||||||||    
T  47373562 ttgctagttttagtcatttatgttagtttctctcaaaaaac-gttaacttatgtaccaatttagtcccctatg 47373633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 626 - 699
Target Start/End: Complemental strand, 41986256 - 41986183
Alignment:
Q  626 aggcttattcaatcatccggtcccttaacttaattaattgtctcaatttagtcccctaactataatttgtacca 699  Q
    ||||||||||||||| ||||| |||||||||||||  ||||||||||||  |||||||||||||||||||||||    
T  41986256 aggcttattcaatcacccggttccttaacttaattgtttgtctcaatttgatcccctaactataatttgtacca 41986183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 645 - 753
Target Start/End: Complemental strand, 38408229 - 38408121
Alignment:
Q  645 gtcccttaacttaattaattgtctcaatttagtcccctaactataatttgtaccaatttggtcccctatgttttgcttcgttactagttttagttctttc 744  Q
    ||||||||||||||||  |||| |||| || ||||||||| ||||||||||||||| || |||| ||| ||||||||  ||||| |||||  || |||||    
T  38408229 gtcccttaacttaattgtttgtatcaaattggtcccctaaatataatttgtaccaaattcgtcctctaagttttgctctgttaccagtttcggtcctttc 38408130  T
Q  745 tggtagttt 753  Q
    || ||||||    
T  38408129 tgttagttt 38408121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 645 - 753
Target Start/End: Complemental strand, 6271296 - 6271188
Alignment:
Q  645 gtcccttaacttaattaattgtctcaatttagtcccctaactataatttgtaccaatttggtcccctatgttttgcttcgttactagttttagttctttc 744  Q
    ||||||||||||||||  || |  ||| || ||||||||| ||||||||||||||| || ||||  || |||||||| ||||||||||||  || |||||    
T  6271296 gtcccttaacttaattgtttctaccaaattggtcccctaaatataatttgtaccaaattcgtcctttaagttttgctccgttactagtttcggtcctttc 6271197  T
Q  745 tggtagttt 753  Q
    || ||||||    
T  6271196 tgttagttt 6271188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 693 - 743
Target Start/End: Complemental strand, 41986108 - 41986058
Alignment:
Q  693 tgtaccaatttggtcccctatgttttgcttcgttactagttttagttcttt 743  Q
    ||||||||||||||||||||||||||||| |||| ||| ||||||| ||||    
T  41986108 tgtaccaatttggtcccctatgttttgctccgttgctaattttagtccttt 41986058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 645 - 734
Target Start/End: Original strand, 6270237 - 6270326
Alignment:
Q  645 gtcccttaacttaattaattgtctcaatttagtcccctaactataatttgtaccaatttggtcccctatgttttgcttcgttactagttt 734  Q
    ||||||||||||||||| ||||   || || ||| ||||| ||||||||||||||| || |||| ||| || ||||| ||||||||||||    
T  6270237 gtcccttaacttaattatttgtactaaattggtcgcctaaatataatttgtaccaaattcgtcctctaagtgttgctccgttactagttt 6270326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 693 - 738
Target Start/End: Original strand, 47373612 - 47373657
Alignment:
Q  693 tgtaccaatttggtcccctatgttttgcttcgttactagttttagt 738  Q
    ||||||||||| ||||||||||||||||| ||||| ||||||||||    
T  47373612 tgtaccaatttagtcccctatgttttgctccgttattagttttagt 47373657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 625 - 681
Target Start/End: Complemental strand, 22226721 - 22226665
Alignment:
Q  625 taggcttattcaatcatccggtcccttaacttaattaattgtctcaatttagtcccc 681  Q
    |||||||||||||||| | | ||||||| ||||||| ||||||||||||| ||||||    
T  22226721 taggcttattcaatcacctgatcccttagcttaattgattgtctcaatttggtcccc 22226665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 645 - 753
Target Start/End: Original strand, 38407450 - 38407558
Alignment:
Q  645 gtcccttaacttaattaattgtctcaatttagtcccctaactataatttgtaccaatttggtcccctatgttttgcttcgttactagttttagttctttc 744  Q
    |||||||||||||||   ||||  ||| || ||||||||| ||||||||||||||| || |||| ||| ||||||||  ||||| |||||  || |||||    
T  38407450 gtcccttaacttaatggtttgtaccaaattggtcccctaaatataatttgtaccaaattcgtcctctaagttttgctctgttaccagtttcggtcctttc 38407549  T
Q  745 tggtagttt 753  Q
    || ||||||    
T  38407550 tgttagttt 38407558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 97; Significance: 3e-47; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 626 - 758
Target Start/End: Complemental strand, 51663598 - 51663466
Alignment:
Q  626 aggcttattcaatcatccggtcccttaacttaattaattgtctcaatttagtcccctaactataatttgtaccaatttggtcccctatgttttgcttcgt 725  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||| ||||||||||| ||||||||||||  ||    
T  51663598 aggcttattcaatcatccggtcccttaacttaattgattgtctcaatttggtcccctaactataatttgtagcaatttggtcctctatgttttgctatgt 51663499  T
Q  726 tactagttttagttctttctggtagtttctctc 758  Q
    |||||||||||||  |||||| |||||||||||    
T  51663498 tactagttttagtcatttctgttagtttctctc 51663466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 629 - 797
Target Start/End: Complemental strand, 46003593 - 46003425
Alignment:
Q  629 cttattcaatcatccggtcccttaacttaattaattgtctcaatttagtcccctaactataatttgtaccaatttggtcccctatgttttgcttcgttac 728  Q
    |||||| ||||||| ||||||||||||||||| ||||||||||||| |||||||||||| |||||||||||||||| |||||| ||||||||||| ||||    
T  46003593 cttatttaatcatctggtcccttaacttaattgattgtctcaatttggtcccctaactaaaatttgtaccaatttgatcccctttgttttgcttcattac 46003494  T
Q  729 tagttttagttctttctggtagtttctctcnnnnnnntgttaacttatgtatcaatttggtcccctatg 797  Q
    |||||||||| ||||||||||||||||||         ||||||||||||| ||||||||||| |||||    
T  46003493 tagttttagtcctttctggtagtttctctaaaaaaaacgttaacttatgtaccaatttggtcctctatg 46003425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 93; E-Value: 7e-45
Query Start/End: Original strand, 626 - 757
Target Start/End: Original strand, 40244624 - 40244756
Alignment:
Q  626 aggcttattcaatcatccggtcccttaacttaattaattgtctcaatttagtcccctaactataatttgtaccaatttgg-tcccctatgttttgcttcg 724  Q
    ||||||||||||||||||| ||||||||||||||| ||||||||||||| ||||| |||||||||||||||||||||||| ||||||||||||||||| |    
T  40244624 aggcttattcaatcatccgatcccttaacttaattgattgtctcaatttggtcccttaactataatttgtaccaatttggttcccctatgttttgctttg 40244723  T
Q  725 ttactagttttagttctttctggtagtttctct 757  Q
    ||||||||||||||  |||||| ||||||||||    
T  40244724 ttactagttttagtcatttctgttagtttctct 40244756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 627 - 797
Target Start/End: Original strand, 51663250 - 51663420
Alignment:
Q  627 ggcttattcaatcatccggtcccttaacttaattaattgtctcaatttagtcccctaactataatttgtaccaatttggtcccctatgttttgcttcgtt 726  Q
    |||||||| ||||| |||||| |||||||||||| ||||| | ||| | |||| |||||||||||||||| |||||| ||||||||||||||||||||||    
T  51663250 ggcttatttaatcacccggtctcttaacttaattgattgttttaatatggtccactaactataatttgtatcaatttagtcccctatgttttgcttcgtt 51663349  T
Q  727 actagttttagttctttctggtagtttctctcnnnnnnntgttaacttatgtatcaatttggtcccctatg 797  Q
    ||||||||||||  ||||||||||||||||||        |||||||||||||  ||||||||||||||||    
T  51663350 actagttttagtcatttctggtagtttctctcaaaaaaacgttaacttatgtactaatttggtcccctatg 51663420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 626 - 757
Target Start/End: Original strand, 20537925 - 20538056
Alignment:
Q  626 aggcttattcaatcatccggtcccttaacttaattaattgtctcaatttagtcccctaactataatttgtaccaatttggtcccctatgttttgcttcgt 725  Q
    |||| |||| ||||||| ||||||||||||||||| ||  | |||||||  ||||||||||||||||||| ||||||||||||||||||||||||||| |    
T  20537925 aggcctattgaatcatctggtcccttaacttaattgatattatcaatttgatcccctaactataatttgttccaatttggtcccctatgttttgcttcat 20538024  T
Q  726 tactagttttagttctttctggtagtttctct 757  Q
    ||||||||||||| ||||||  ||||||||||    
T  20538025 tactagttttagtcctttctattagtttctct 20538056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 628 - 758
Target Start/End: Complemental strand, 20538280 - 20538150
Alignment:
Q  628 gcttattcaatcatccggtcccttaacttaattaattgtctcaatttagtcccctaactataatttgtaccaatttggtcccctatgttttgcttcgtta 727  Q
    ||||||||||||| ||||||| |||| |||||| |||||||||||||  |||||||||||||||||||| |||||| ||   |||||||||||| |||||    
T  20538280 gcttattcaatcacccggtcctttaatttaattgattgtctcaatttgatcccctaactataatttgtatcaatttagttatctatgttttgctccgtta 20538181  T
Q  728 ctagttttagttctttctggtagtttctctc 758  Q
    |||||||||||  |||||| |||||||||||    
T  20538180 ctagttttagtcatttctgttagtttctctc 20538150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 620 - 758
Target Start/End: Original strand, 46003241 - 46003379
Alignment:
Q  620 aaaagtaggcttattcaatcatccggtcccttaacttaattaattgtctcaatttagtcccctaactataatttgtaccaatttggtcccctatgttttg 719  Q
    ||||||||| ||||||||||| ||||||| ||||||||||| ||||| | ||||| ||||||||||||||||||||| ||||||||||| ||||||| ||    
T  46003241 aaaagtaggtttattcaatcacccggtcctttaacttaattgattgttttaatttggtcccctaactataatttgtatcaatttggtcctctatgttctg 46003340  T
Q  720 cttcgttactagttttagttctttctggtagtttctctc 758  Q
     |  ||||| ||||||||| |||| || |||||||||||    
T  46003341 ttctgttacaagttttagtcctttttgttagtttctctc 46003379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 630 - 738
Target Start/End: Complemental strand, 40364301 - 40364194
Alignment:
Q  630 ttattcaatcatccggtcccttaacttaattaattgtctcaatttagtcccctaactataatttgtaccaatttggtcccctatgttttgcttcgttact 729  Q
    |||||||||||   ||||||||||||||||| ||||| ||||||| ||| ||||||||||||||||||||||||| | |||||||||||| | |||||||    
T  40364301 ttattcaatcacttggtcccttaacttaattgattgtttcaatttggtctcctaactataatttgtaccaatttgat-ccctatgttttgttccgttact 40364203  T
Q  730 agttttagt 738  Q
    |||||||||    
T  40364202 agttttagt 40364194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 626 - 758
Target Start/End: Original strand, 40364040 - 40364172
Alignment:
Q  626 aggcttattcaatcatccggtcccttaacttaattaattgtctcaatttagtcccctaactataatttgtaccaatttggtcccctatgttttgcttcgt 725  Q
    |||||||||| |||| ||  ||||||||||||||| ||| ||| ||||| ||||| ||| ||||||||||| ||||||| |||||| | ||||||| |||    
T  40364040 aggcttattcgatcacccaatcccttaacttaattgattatcttaatttggtcccataattataatttgtatcaatttgatcccctgtattttgctccgt 40364139  T
Q  726 tactagttttagttctttctggtagtttctctc 758  Q
    || ||||||||||  ||| || |||||||||||    
T  40364140 tattagttttagtcatttttgttagtttctctc 40364172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 626 - 689
Target Start/End: Complemental strand, 40244936 - 40244873
Alignment:
Q  626 aggcttattcaatcatccggtcccttaacttaattaattgtctcaatttagtcccctaactata 689  Q
    ||||||||||||||| || |||||||||||||||| ||||||||||||| ||||||||||||||    
T  40244936 aggcttattcaatcaccccgtcccttaacttaattgattgtctcaatttggtcccctaactata 40244873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 693 - 746
Target Start/End: Complemental strand, 46003446 - 46003393
Alignment:
Q  693 tgtaccaatttggtcccctatgttttgcttcgttactagttttagttctttctg 746  Q
    |||||||||||||||| ||||||||||||||||||||||||||||| |||||||    
T  46003446 tgtaccaatttggtcctctatgttttgcttcgttactagttttagtcctttctg 46003393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 693 - 738
Target Start/End: Original strand, 20538076 - 20538121
Alignment:
Q  693 tgtaccaatttggtcccctatgttttgcttcgttactagttttagt 738  Q
    |||||||||||||||||||||||||||||| |||| ||||||||||    
T  20538076 tgtaccaatttggtcccctatgttttgctttgttattagttttagt 20538121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 693 - 738
Target Start/End: Original strand, 51663399 - 51663444
Alignment:
Q  693 tgtaccaatttggtcccctatgttttgcttcgttactagttttagt 738  Q
    ||||| |||||||||||||||||||||||  ||| |||||||||||    
T  51663399 tgtactaatttggtcccctatgttttgctctgttcctagttttagt 51663444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0781 (Bit Score: 96; Significance: 1e-46; HSPs: 1)
Name: scaffold0781
Description:

Target: scaffold0781; HSP #1
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 627 - 738
Target Start/End: Complemental strand, 5382 - 5271
Alignment:
Q  627 ggcttattcaatcatccggtcccttaacttaattaattgtctcaatttagtcccctaactataatttgtaccaatttggtcccctatgttttgcttcgtt 726  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  5382 ggcttattcaatcatccggtcccttaacttaattgattgtctcaatttggtcccctaactataatttgtaccaatttggtcccctatgttttgctttgtt 5283  T
Q  727 actagttttagt 738  Q
    | ||||||||||    
T  5282 attagttttagt 5271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 96; Significance: 1e-46; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 627 - 738
Target Start/End: Complemental strand, 2216925 - 2216814
Alignment:
Q  627 ggcttattcaatcatccggtcccttaacttaattaattgtctcaatttagtcccctaactataatttgtaccaatttggtcccctatgttttgcttcgtt 726  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  2216925 ggcttattcaatcatccggtcccttaacttaattgattgtctcaatttggtcccctaactataatttgtaccaatttggtcccctatgttttgctttgtt 2216826  T
Q  727 actagttttagt 738  Q
    | ||||||||||    
T  2216825 attagttttagt 2216814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 626 - 758
Target Start/End: Original strand, 24798624 - 24798756
Alignment:
Q  626 aggcttattcaatcatccggtcccttaacttaattaattgtctcaatttagtcccctaactataatttgtaccaatttggtcccctatgttttgcttcgt 725  Q
    ||||||||||||| || ||||||||||||||||||  |||| ||||||| ||||||| ||||||||||||||||||||||||| ||||||||||||||||    
T  24798624 aggcttattcaattattcggtcccttaacttaattggttgtttcaatttggtcccctgactataatttgtaccaatttggtcctctatgttttgcttcgt 24798723  T
Q  726 tactagttttagttctttctggtagtttctctc 758  Q
    |||||||||||||  |||||| |||||||||||    
T  24798724 tactagttttagtcatttctgttagtttctctc 24798756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 625 - 753
Target Start/End: Complemental strand, 24798971 - 24798843
Alignment:
Q  625 taggcttattcaatcatccggtcccttaacttaattaattgtctcaatttagtcccctaactataatttgtaccaatttggtcccctatgttttgcttcg 724  Q
    |||||||||||||||| ||| |||||||| |||||| ||||||| |||||  |||||||||||||||||||| |||||||||||||||||||||||||||    
T  24798971 taggcttattcaatcacccgatcccttaaattaattgattgtcttaatttgatcccctaactataatttgtatcaatttggtcccctatgttttgcttcg 24798872  T
Q  725 ttactagttttagttctttctggtagttt 753  Q
    |||||||||||||| |||||| |||||||    
T  24798871 ttactagttttagtcctttctagtagttt 24798843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 632 - 797
Target Start/End: Original strand, 11643754 - 11643919
Alignment:
Q  632 attcaatcatccggtcccttaacttaattaattgtctcaatttagtcccctaactataatttgtaccaatttggtcccctatgttttgcttcgttactag 731  Q
    ||||||||| |||||||||||| |||||| |||||||||||||  |||||||||||||||||||| ||||||||| |||||||||||| || ||||||||    
T  11643754 attcaatcacccggtcccttaatttaattgattgtctcaatttgatcccctaactataatttgtatcaatttggttccctatgttttgttttgttactag 11643853  T
Q  732 ttttagttctttctggtagtttctctcnnnnnnntgttaacttatgtatcaatttggtcccctatg 797  Q
    ||||||| || |||| ||||||||||         ||||||||||||| |||||||||||||||||    
T  11643854 ttttagtcctctctgttagtttctctaaaaaaaacgttaacttatgtaccaatttggtcccctatg 11643919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 627 - 796
Target Start/End: Complemental strand, 18495079 - 18494911
Alignment:
Q  627 ggcttattcaatcatccggtcccttaacttaattaattgtctcaatttagtcccctaactataatttgtaccaatttggtcccctatgttttgcttcgtt 726  Q
    ||||||||||||||||  |||||||||||||||| ||| | | |||||  |||| ||||||||||||||| |||||||||||||||| ||||| | ||||    
T  18495079 ggcttattcaatcatctagtcccttaacttaattgattatattaatttgatcccttaactataatttgtatcaatttggtcccctatattttgatccgtt 18494980  T
Q  727 actagttttagttctttctggtagtttctctcnnnnnnntgttaacttatgtatcaatttggtcccctat 796  Q
    | |||||||||||||||||| ||||||||||         ||||||||||||| ||||||||||||||||    
T  18494979 attagttttagttctttctgttagtttctct-aaaaaaacgttaacttatgtagcaatttggtcccctat 18494911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 625 - 721
Target Start/End: Original strand, 24690353 - 24690449
Alignment:
Q  625 taggcttattcaatcatccggtcccttaacttaattaattgtctcaatttagtcccctaactataatttgtaccaatttggtcccctatgttttgct 721  Q
    |||||||||||||||| |||||| |||||||||||| ||||||||||||| ||||||| ||||||||||||||||||||||||| ||||||||||||    
T  24690353 taggcttattcaatcacccggtctcttaacttaattgattgtctcaatttggtccccttactataatttgtaccaatttggtcctctatgttttgct 24690449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 625 - 738
Target Start/End: Complemental strand, 11644097 - 11643985
Alignment:
Q  625 taggcttattcaatcatccggtcccttaacttaattaattgtctcaatttagt-cccctaactataatttgtaccaatttggtcccctatgttttgcttc 723  Q
    |||||||||||||||| ||||||||||||||||||| ||||||||||||| || ||||||||||||||||||| ||||||||| ||||||||||| |||     
T  11644097 taggcttattcaatcacccggtcccttaacttaattgattgtctcaatttggtccccctaactataatttgtatcaatttggt-ccctatgtttt-cttt 11644000  T
Q  724 gttactagttttagt 738  Q
    |||||||||||||||    
T  11643999 gttactagttttagt 11643985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 625 - 757
Target Start/End: Original strand, 18494732 - 18494862
Alignment:
Q  625 taggcttattcaatcatccggtcccttaacttaattaattgtctcaatttagtcccctaactataatttgtaccaatttggtcccctatgttttgcttcg 724  Q
    ||||||||||||||||   ||||||||||||| ||| ||||||||||||| || ||||| ||||||||||||||| |||||||||||||| ||||||| |    
T  18494732 taggcttattcaatcacatggtcccttaactttattgattgtctcaatttggt-ccctagctataatttgtaccattttggtcccctatg-tttgctttg 18494829  T
Q  725 ttactagttttagttctttctggtagtttctct 757  Q
    |||||||||||||| |||| || ||||||||||    
T  18494830 ttactagttttagtcctttttgttagtttctct 18494862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 629 - 713
Target Start/End: Complemental strand, 24690691 - 24690607
Alignment:
Q  629 cttattcaatcatccggtcccttaacttaattaattgtctcaatttagtcccctaactataatttgtaccaatttggtcccctat 713  Q
    |||||||||||| ||| ||||||||||||||| ||||| | ||||| || |||||||||||||||||||||||||||||||||||    
T  24690691 cttattcaatcacccgatcccttaacttaattgattgttttaatttggttccctaactataatttgtaccaatttggtcccctat 24690607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 693 - 738
Target Start/End: Original strand, 11643898 - 11643943
Alignment:
Q  693 tgtaccaatttggtcccctatgttttgcttcgttactagttttagt 738  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||    
T  11643898 tgtaccaatttggtcccctatgttttgctccgttactagttttagt 11643943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 645 - 734
Target Start/End: Original strand, 9954825 - 9954914
Alignment:
Q  645 gtcccttaacttaattaattgtctcaatttagtcccctaactataatttgtaccaatttggtcccctatgttttgcttcgttactagttt 734  Q
    ||||||||||||||||  ||||  ||| || ||||||||| ||||||||||||||| || |||| ||| |||||||| |||||| |||||    
T  9954825 gtcccttaacttaattgtttgtaccaaattggtcccctaaatataatttgtaccaaattcgtcctctaagttttgctccgttaccagttt 9954914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 645 - 753
Target Start/End: Complemental strand, 9955698 - 9955590
Alignment:
Q  645 gtcccttaacttaattaattgtctcaatttagtcccctaactataatttgtaccaatttggtcccctatgttttgcttcgttactagttttagttctttc 744  Q
    ||||||||||||||||  |||| |||| || ||||||||| ||||||||||||||| ||  ||| ||| ||||||||  ||||| |||||  || |||||    
T  9955698 gtcccttaacttaattgtttgtatcaaattggtcccctaaatataatttgtaccaaattcatcctctaagttttgctctgttaccagtttcggtcctttc 9955599  T
Q  745 tggtagttt 753  Q
    || ||||||    
T  9955598 tgttagttt 9955590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 692 - 744
Target Start/End: Complemental strand, 24798822 - 24798770
Alignment:
Q  692 ttgtaccaatttggtcccctatgttttgcttcgttactagttttagttctttc 744  Q
    ||||| |||||||||||||||||||||||| |||| ||||||||||| |||||    
T  24798822 ttgtatcaatttggtcccctatgttttgctccgttcctagttttagtcctttc 24798770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 693 - 746
Target Start/End: Complemental strand, 18494931 - 18494878
Alignment:
Q  693 tgtaccaatttggtcccctatgttttgcttcgttactagttttagttctttctg 746  Q
    |||| |||||||||||||||| ||| |||   ||||||||||||||||||||||    
T  18494931 tgtagcaatttggtcccctatatttcgctctattactagttttagttctttctg 18494878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 693 - 746
Target Start/End: Complemental strand, 24690557 - 24690504
Alignment:
Q  693 tgtaccaatttggtcccctatgttttgcttcgttactagttttagttctttctg 746  Q
    ||||||||||||||| |||||||||||||   ||| |||||||||| |||||||    
T  24690557 tgtaccaatttggtctcctatgttttgctctattaatagttttagtcctttctg 24690504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 94; Significance: 2e-45; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 625 - 758
Target Start/End: Original strand, 39161286 - 39161419
Alignment:
Q  625 taggcttattcaatcatccggtcccttaacttaattaattgtctcaatttagtcccctaactataatttgtaccaatttggtcccctatgttttgcttcg 724  Q
    |||||||||||||||| ||| ||| ||||||||||| | ||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  39161286 taggcttattcaatcacccgatcctttaacttaattgaatgtcttaatttggtcccctaactataatttgtaccaatttggtcccctatgttttgcttcg 39161385  T
Q  725 ttactagttttagttctttctggtagtttctctc 758  Q
    |||||||||||||| |||||||  ||||||||||    
T  39161386 ttactagttttagtcctttctgaaagtttctctc 39161419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 614 - 758
Target Start/End: Complemental strand, 39161647 - 39161503
Alignment:
Q  614 attataaaaagtaggcttattcaatcatccggtcccttaacttaattaattgtctcaatttagtcccctaactataatttgtaccaatttggtcccctat 713  Q
    |||||||||  ||||||||||||| |||||||| ||||||||||||| ||||| | ||||| |||||||||||||||||||||||||||| |||| ||||    
T  39161647 attataaaatctaggcttattcaaccatccggttccttaacttaattgattgttttaatttggtcccctaactataatttgtaccaatttagtcctctat 39161548  T
Q  714 gttttgcttcgttactagttttagttctttctggtagtttctctc 758  Q
    |||||||| ||||| |||||||||| ||||||| |||||||||||    
T  39161547 gttttgctccgttattagttttagtcctttctgttagtttctctc 39161503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 88; E-Value: 7e-42
Query Start/End: Original strand, 619 - 758
Target Start/End: Complemental strand, 55173608 - 55173469
Alignment:
Q  619 aaaaagtaggcttattcaatcatccggtcccttaacttaattaattgtctcaatttagtcccctaactataatttgtaccaatttggtcccctatgtttt 718  Q
    ||||| |||||||||||||||| ||||||||||||||||||| |||||||||||||  || ||||||||||||||||||||||||||||||||||| |||    
T  55173608 aaaaattaggcttattcaatcacccggtcccttaacttaattgattgtctcaatttgatctcctaactataatttgtaccaatttggtcccctatgcttt 55173509  T
Q  719 gcttcgttactagttttagttctttctggtagtttctctc 758  Q
    |||| |||||| ||||||||  ||| || |||||||||||    
T  55173508 gctttgttacttgttttagtcttttttgctagtttctctc 55173469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 626 - 738
Target Start/End: Complemental strand, 50509476 - 50509364
Alignment:
Q  626 aggcttattcaatcatccggtcccttaacttaattaattgtctcaatttagtcccctaactataatttgtaccaatttggtcccctatgttttgcttcgt 725  Q
    ||||||||||||||||| | ||||||||||||||| ||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  50509476 aggcttattcaatcatctgatcccttaacttaattgattgtcttaatttggtcccctaactataatttgtaccaatttggtcccctatgttttgctttgt 50509377  T
Q  726 tactagttttagt 738  Q
    ||||| |||||||    
T  50509376 tactaattttagt 50509364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 625 - 758
Target Start/End: Complemental strand, 47097146 - 47097016
Alignment:
Q  625 taggcttattcaatcatccggtcccttaacttaattaattgtctcaatttagtcccctaactataatttgtaccaatttggtcccctatgttttgcttcg 724  Q
    |||||||||||||||||||| || |||||||||||| |||||||||||||||||| |||||||||||||||||||||||| |   |||||||||||  ||    
T  47097146 taggcttattcaatcatccgatctcttaacttaattgattgtctcaatttagtcctctaactataatttgtaccaatttgat---ctatgttttgccccg 47097050  T
Q  725 ttactagttttagttctttctggtagtttctctc 758  Q
    ||||||||||||||  ||| || |||||||||||    
T  47097049 ttactagttttagtcatttttgttagtttctctc 47097016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 627 - 746
Target Start/End: Original strand, 55173334 - 55173454
Alignment:
Q  627 ggcttattcaatcatccggtcccttaacttaattaattgtctcaatttagtcccctaactataatttgtaccaatttggt-cccctatgttttgcttcgt 725  Q
    ||||||||| |||||||||| ||||||||||||| ||||||| ||||| |||||||||||||||||||||  |||||||| ||||||| ||||||| |||    
T  55173334 ggcttattcgatcatccggttccttaacttaattgattgtcttaatttggtcccctaactataatttgtattaatttggtccccctatattttgctccgt 55173433  T
Q  726 tactagttttagttctttctg 746  Q
    ||||||||||||| |||||||    
T  55173434 tactagttttagtcctttctg 55173454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 625 - 757
Target Start/End: Original strand, 47096798 - 47096928
Alignment:
Q  625 taggcttattcaatcatccggtcccttaacttaattaattgtctcaatttagtcccctaactataatttgtaccaatttggtcccctatgttttgcttcg 724  Q
    |||||||||||||||| | | ||||||||||||||| ||| ||||||||| |||||||||| ||||||||||||||||| | ||||||||||||||||||    
T  47096798 taggcttattcaatcacctgatcccttaacttaattgattatctcaatttggtcccctaac-ataatttgtaccaattt-gccccctatgttttgcttcg 47096895  T
Q  725 ttactagttttagttctttctggtagtttctct 757  Q
    ||||| |||||||| |||| || | ||||||||    
T  47096896 ttacttgttttagtcctttatgtttgtttctct 47096928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 630 - 738
Target Start/End: Original strand, 37996068 - 37996176
Alignment:
Q  630 ttattcaatcatccggtcccttaacttaattaattgtctcaatttagtcccctaactataatttgtaccaatttggtcccctatgttttgcttcgttact 729  Q
    ||||||||||| | | |||||||| | || | ||||| ||||||| ||||| ||||||||||||||| ||||||||||||||||||||||||| |||| |    
T  37996068 ttattcaatcacctgatcccttaattaaaatgattgtttcaatttggtcccttaactataatttgtatcaatttggtcccctatgttttgctttgttatt 37996167  T
Q  730 agttttagt 738  Q
    |||||||||    
T  37996168 agttttagt 37996176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 627 - 674
Target Start/End: Complemental strand, 2623498 - 2623451
Alignment:
Q  627 ggcttattcaatcatccggtcccttaacttaattaattgtctcaattt 674  Q
    ||||||||||||||  |||||||||||||||||| |||||||||||||    
T  2623498 ggcttattcaatcactcggtcccttaacttaattgattgtctcaattt 2623451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 645 - 728
Target Start/End: Original strand, 9738136 - 9738219
Alignment:
Q  645 gtcccttaacttaattaattgtctcaatttagtcccctaactataatttgtaccaatttggtcccctatgttttgcttcgttac 728  Q
    ||||||||||||||||  ||||  ||| || ||||||||| ||||||||||||||| || |||| ||| |||||||| ||||||    
T  9738136 gtcccttaacttaattgtttgtaccaaattggtcccctaaatataatttgtaccaaattcgtcctctaagttttgctccgttac 9738219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 693 - 746
Target Start/End: Original strand, 47096947 - 47097001
Alignment:
Q  693 tgtaccaatttggtcccc-tatgttttgcttcgttactagttttagttctttctg 746  Q
    |||||||||||||||||| ||||||||||| | |||||||||||||| |||||||    
T  47096947 tgtaccaatttggtccccctatgttttgctccattactagttttagtcctttctg 47097001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 693 - 745
Target Start/End: Original strand, 39161436 - 39161488
Alignment:
Q  693 tgtaccaatttggtcccctatgttttgcttcgttactagttttagttctttct 745  Q
    ||||||||||||||||| ||||||||| | |||| ||||||||||| ||||||    
T  39161436 tgtaccaatttggtcccatatgttttgatccgttcctagttttagtcctttct 39161488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 645 - 719
Target Start/End: Complemental strand, 9739011 - 9738937
Alignment:
Q  645 gtcccttaacttaattaattgtctcaatttagtcccctaactataatttgtaccaatttggtcccctatgttttg 719  Q
    |||||||||||| |||  |||| |||| || ||||||||| ||||||||||||||| || |||| ||| ||||||    
T  9739011 gtcccttaacttgattgtttgtatcaaattggtcccctaaatataatttgtaccaaattcgtcctctaagttttg 9738937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0034 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 679 - 743
Target Start/End: Original strand, 108047 - 108111
Alignment:
Q  679 ccctaactataatttgtaccaatttggtcccctatgttttgcttcgttactagttttagttcttt 743  Q
    ||||||| |||||||||| ||||||||||| || ||||||||| | |||||||||||||| ||||    
T  108047 ccctaaccataatttgtatcaatttggtcctctgtgttttgctccattactagttttagtccttt 108111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 644 - 753
Target Start/End: Complemental strand, 61151 - 61042
Alignment:
Q  644 ggtcccttaacttaattaattgtctcaatttagtcccctaactataatttgtaccaatttggtcccctatgttttgcttcgttactagttttagttcttt 743  Q
    |||||||||||||||||  ||||  ||| || ||||| ||| | ||||||||||||| || |||| ||| |||||||| |||||  |||||  || ||||    
T  61151 ggtcccttaacttaattgtttgtaccaaattggtcccttaaatttaatttgtaccaaattcgtcctctaagttttgctccgttatcagtttaggtccttt 61052  T
Q  744 ctggtagttt 753  Q
    ||| ||||||    
T  61051 ctgttagttt 61042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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