View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19047_low_4 (Length: 535)

Name: NF19047_low_4
Description: NF19047
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19047_low_4
NF19047_low_4
[»] chr2 (9 HSPs)
chr2 (67-401)||(4795104-4795446)
chr2 (398-520)||(4795470-4795592)
chr2 (39-76)||(34944416-34944453)
chr2 (1-72)||(2199978-2200050)
chr2 (39-72)||(6027618-6027651)
chr2 (39-72)||(11852189-11852222)
chr2 (40-72)||(1142997-1143029)
chr2 (39-79)||(2200244-2200284)
chr2 (39-79)||(44436825-44436865)
[»] chr5 (10 HSPs)
chr5 (1-72)||(14649188-14649256)
chr5 (1-72)||(21239099-21239170)
chr5 (4-75)||(23286443-23286514)
chr5 (39-77)||(19571943-19571981)
chr5 (39-72)||(22657768-22657801)
chr5 (39-72)||(27873349-27873382)
chr5 (39-72)||(40643094-40643127)
chr5 (39-79)||(4976294-4976334)
chr5 (39-79)||(9065172-9065212)
chr5 (40-72)||(40738410-40738442)
[»] chr3 (17 HSPs)
chr3 (3-77)||(27646274-27646348)
chr3 (3-72)||(1111616-1111685)
chr3 (39-75)||(33212394-33212430)
chr3 (38-81)||(11354542-11354585)
chr3 (39-81)||(34811306-34811348)
chr3 (39-80)||(2993251-2993292)
chr3 (39-72)||(6784727-6784760)
chr3 (39-72)||(21458982-21459015)
chr3 (39-72)||(24813602-24813635)
chr3 (39-72)||(28673298-28673331)
chr3 (3-72)||(31541027-31541096)
chr3 (39-72)||(50517526-50517559)
chr3 (39-72)||(53164163-53164196)
chr3 (39-72)||(54866537-54866570)
chr3 (38-66)||(39952534-39952562)
chr3 (40-72)||(42044257-42044289)
chr3 (39-79)||(53687001-53687041)
[»] scaffold0236 (1 HSPs)
scaffold0236 (39-72)||(17464-17497)
[»] chr4 (13 HSPs)
chr4 (1-78)||(13620820-13620897)
chr4 (1-81)||(26866829-26866909)
chr4 (39-75)||(55014972-55015008)
chr4 (39-72)||(3085445-3085478)
chr4 (39-72)||(26889903-26889936)
chr4 (39-72)||(28298375-28298408)
chr4 (39-72)||(36901114-36901147)
chr4 (39-72)||(39114891-39114924)
chr4 (39-79)||(17610024-17610064)
chr4 (39-75)||(28495377-28495413)
chr4 (39-75)||(53564360-53564396)
chr4 (47-83)||(54878027-54878063)
chr4 (39-75)||(55563131-55563167)
[»] scaffold0250 (1 HSPs)
scaffold0250 (8-72)||(9399-9463)
[»] scaffold0161 (1 HSPs)
scaffold0161 (1-77)||(3433-3508)
[»] chr7 (10 HSPs)
chr7 (3-79)||(17317435-17317510)
chr7 (39-73)||(19845673-19845707)
chr7 (39-72)||(7400129-7400162)
chr7 (39-72)||(9140537-9140570)
chr7 (39-72)||(19292839-19292872)
chr7 (39-72)||(21119557-21119590)
chr7 (39-72)||(22991748-22991781)
chr7 (39-72)||(27529229-27529262)
chr7 (39-72)||(29629716-29629749)
chr7 (39-72)||(41444467-41444500)
[»] scaffold0674 (1 HSPs)
scaffold0674 (39-82)||(5141-5184)
[»] scaffold0549 (1 HSPs)
scaffold0549 (39-82)||(10186-10229)
[»] scaffold0240 (1 HSPs)
scaffold0240 (39-82)||(18487-18530)
[»] chr1 (5 HSPs)
chr1 (1-80)||(21631073-21631152)
chr1 (39-69)||(51467476-51467506)
chr1 (39-72)||(3934606-3934639)
chr1 (39-72)||(22567066-22567099)
chr1 (39-75)||(25284071-25284107)
[»] chr8 (4 HSPs)
chr8 (39-72)||(4778591-4778624)
chr8 (39-72)||(41898500-41898533)
chr8 (39-75)||(44502617-44502653)
chr8 (39-75)||(45283796-45283832)
[»] chr6 (2 HSPs)
chr6 (39-72)||(9341838-9341871)
chr6 (1-29)||(23604505-23604533)


Alignment Details
Target: chr2 (Bit Score: 301; Significance: 1e-169; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 67 - 401
Target Start/End: Original strand, 4795104 - 4795446
Alignment:
Q  67 atagtaataaatattatgtgtcgtgaactgattggttggcactagccatcccagctcatctggctca---aaattcacaacacacgaatgactctgaaaa 163  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||    
T  4795104 atagtaataaatattaggtgtcgtgaactgattggttggcactagccatcccagctcatctggctcatcaaaattcacaacacacgaatgactctgaaaa 4795203  T
Q  164 atgaacaacgattttgtt-----atgacacaacaaccactggaacttagtttaaaattgaaagcaaatagatacaattatttggaaagttttcgttcctt 258  Q
    ||||||||||||||||||     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4795204 atgaacaacgattttgttatgttatgacacaacaaccactggaacttagtttaaaattgaaagcaaatagatacaattatttggaaagttttcgttcctt 4795303  T
Q  259 tgctatatggcagcatcatcccctttgatttacgcgcgttgtagttactctccactaattacttctttttctcaaccttcttcctcatcctccccctgtt 358  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4795304 tgctatatggcagcatcatccccttttatttacgcgcgttgtagttactctccactaattacttctttttctcaaccttcttcctcatcctccccctgtt 4795403  T
Q  359 gctcttcttcatccacccctaactccatttgcacccccctttc 401  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  4795404 gctcttcttcatccacccctaactccatttgcacccccctttc 4795446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 123; E-Value: 6e-63
Query Start/End: Original strand, 398 - 520
Target Start/End: Original strand, 4795470 - 4795592
Alignment:
Q  398 tttcaatttcaggttacttactcccttgttctaaactcctgcatttattgttgtttaacttattcttcaattgctttaatttgtgggatattgtaattat 497  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4795470 tttcaatttcaggttacttactcccttgttctaaactcctgcatttattgttgtttaacttattcttcaattgctttaatttgtgggatattgtaattat 4795569  T
Q  498 tacaatttcaattcgattgaatc 520  Q
    |||||||||||||||||||||||    
T  4795570 tacaatttcaattcgattgaatc 4795592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 39 - 76
Target Start/End: Original strand, 34944416 - 34944453
Alignment:
Q  39 caaaaggatcttataattagggacggagatagtaataa 76  Q
    |||| |||||||||||||||||||||||||||||||||    
T  34944416 caaagggatcttataattagggacggagatagtaataa 34944453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 2200050 - 2199978
Alignment:
Q  1 agcaaaggggtcttataaaaagagacaaannnnnnnnac-aaaaggatcttataattagggacggagatagta 72  Q
    |||||||||||||||||||||||||||||        || |||||| |||||||||||||||||||| |||||    
T  2200050 agcaaaggggtcttataaaaagagacaaaaaaaattcacaaaaagggtcttataattagggacggaggtagta 2199978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 39 - 72
Target Start/End: Complemental strand, 6027651 - 6027618
Alignment:
Q  39 caaaaggatcttataattagggacggagatagta 72  Q
    |||||||||||||||||||||||||||| |||||    
T  6027651 caaaaggatcttataattagggacggaggtagta 6027618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 39 - 72
Target Start/End: Original strand, 11852189 - 11852222
Alignment:
Q  39 caaaaggatcttataattagggacggagatagta 72  Q
    |||||||||||||||||||||||||||| |||||    
T  11852189 caaaaggatcttataattagggacggaggtagta 11852222  T

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Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 40 - 72
Target Start/End: Complemental strand, 1143029 - 1142997
Alignment:
Q  40 aaaaggatcttataattagggacggagatagta 72  Q
    ||||||||||||||||||||||||||| |||||    
T  1143029 aaaaggatcttataattagggacggaggtagta 1142997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 39 - 79
Target Start/End: Original strand, 2200244 - 2200284
Alignment:
Q  39 caaaaggatcttataattagggacggagatagtaataaata 79  Q
    ||||||| |||||||||||||||||||| ||||| ||||||    
T  2200244 caaaagggtcttataattagggacggaggtagtagtaaata 2200284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 39 - 79
Target Start/End: Original strand, 44436825 - 44436865
Alignment:
Q  39 caaaaggatcttataattagggacggagatagtaataaata 79  Q
    ||||||| |||||| ||||||||||||| ||||||||||||    
T  44436825 caaaagggtcttatcattagggacggaggtagtaataaata 44436865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 14649256 - 14649188
Alignment:
Q  1 agcaaaggggtcttataaaaagagacaaannnnnnnnacaaaaggatcttataattagggacggagatagta 72  Q
    ||||||||||||||||||||||||| |||        ||||||||||||||||||||||||||||| |||||    
T  14649256 agcaaaggggtcttataaaaagagaaaaaaaatc---acaaaaggatcttataattagggacggaggtagta 14649188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 21239170 - 21239099
Alignment:
Q  1 agcaaaggggtcttataaaaagagacaaannnnnnnnacaaaaggatcttataattagggacggagatagta 72  Q
    |||||||||||||||||||||||||||||         ||||||| |||| ||||||||||||||| |||||    
T  21239170 agcaaaggggtcttataaaaagagacaaaaaaaattctcaaaagggtcttctaattagggacggaggtagta 21239099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 4 - 75
Target Start/End: Original strand, 23286443 - 23286514
Alignment:
Q  4 aaaggggtcttataaaaagagacaaannnnnnnnacaaaaggatcttataattagggacggagatagtaata 75  Q
    ||||||||||||||||||| ||||||         ||||||| |||||||||||||||||||| ||||||||    
T  23286443 aaaggggtcttataaaaagggacaaaaaaaattctcaaaagggtcttataattagggacggaggtagtaata 23286514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 39 - 77
Target Start/End: Original strand, 19571943 - 19571981
Alignment:
Q  39 caaaaggatcttataattagggacggagatagtaataaa 77  Q
    ||||||| |||||||||||||||||||| ||||||||||    
T  19571943 caaaagggtcttataattagggacggaggtagtaataaa 19571981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 39 - 72
Target Start/End: Complemental strand, 22657801 - 22657768
Alignment:
Q  39 caaaaggatcttataattagggacggagatagta 72  Q
    |||||||||||||||||||||||||||| |||||    
T  22657801 caaaaggatcttataattagggacggaggtagta 22657768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 39 - 72
Target Start/End: Original strand, 27873349 - 27873382
Alignment:
Q  39 caaaaggatcttataattagggacggagatagta 72  Q
    ||||||| ||||||||||||||||||||||||||    
T  27873349 caaaagggtcttataattagggacggagatagta 27873382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 39 - 72
Target Start/End: Complemental strand, 40643127 - 40643094
Alignment:
Q  39 caaaaggatcttataattagggacggagatagta 72  Q
    |||||||||||||||||||||||||||| |||||    
T  40643127 caaaaggatcttataattagggacggaggtagta 40643094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 39 - 79
Target Start/End: Original strand, 4976294 - 4976334
Alignment:
Q  39 caaaaggatcttataattagggacggagatagtaataaata 79  Q
    ||||||| |||||||||||||||||||| ||||| ||||||    
T  4976294 caaaagggtcttataattagggacggaggtagtactaaata 4976334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 39 - 79
Target Start/End: Original strand, 9065172 - 9065212
Alignment:
Q  39 caaaaggatcttataattagggacggagatagtaataaata 79  Q
    |||||||  ||||||||||||||||||||||||| ||||||    
T  9065172 caaaagggccttataattagggacggagatagtactaaata 9065212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 40 - 72
Target Start/End: Complemental strand, 40738442 - 40738410
Alignment:
Q  40 aaaaggatcttataattagggacggagatagta 72  Q
    ||||||||||||||||||||||||||| |||||    
T  40738442 aaaaggatcttataattagggacggaggtagta 40738410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 3 - 77
Target Start/End: Original strand, 27646274 - 27646348
Alignment:
Q  3 caaaggggtcttataaaaagagacaaannnnnnnnacaaaaggatcttataattagggacggagatagtaataaa 77  Q
    |||| ||||||||||||||||||||||         |||||||||||||||||||||||||||| ||||| ||||    
T  27646274 caaaagggtcttataaaaagagacaaaaaaatttctcaaaaggatcttataattagggacggaggtagtagtaaa 27646348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 3 - 72
Target Start/End: Original strand, 1111616 - 1111685
Alignment:
Q  3 caaaggggtcttataaaaagagacaaannnnnnnnacaaaaggatcttataattagggacggagatagta 72  Q
    |||| ||||||||||||||||||||||         ||||||| ||||||||||||||||||||||||||    
T  1111616 caaaagggtcttataaaaagagacaaaaaaatttctcaaaagggtcttataattagggacggagatagta 1111685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 39 - 75
Target Start/End: Complemental strand, 33212430 - 33212394
Alignment:
Q  39 caaaaggatcttataattagggacggagatagtaata 75  Q
    |||||||||||||||||||||||||||| ||||||||    
T  33212430 caaaaggatcttataattagggacggaggtagtaata 33212394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 38 - 81
Target Start/End: Complemental strand, 11354585 - 11354542
Alignment:
Q  38 acaaaaggatcttataattagggacggagatagtaataaatatt 81  Q
    ||||||||||||||||||| ||||||||| |||||||| |||||    
T  11354585 acaaaaggatcttataatttgggacggagttagtaatatatatt 11354542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 39 - 81
Target Start/End: Complemental strand, 34811348 - 34811306
Alignment:
Q  39 caaaaggatcttataattagggacggagatagtaataaatatt 81  Q
    |||||||||||||||||||||||||||| || || ||||||||    
T  34811348 caaaaggatcttataattagggacggaggtaatattaaatatt 34811306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 39 - 80
Target Start/End: Complemental strand, 2993292 - 2993251
Alignment:
Q  39 caaaaggatcttataattagggacggagatagtaataaatat 80  Q
    ||||| |||||||||||||||||||||| ||||| |||||||    
T  2993292 caaaatgatcttataattagggacggaggtagtattaaatat 2993251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 39 - 72
Target Start/End: Original strand, 6784727 - 6784760
Alignment:
Q  39 caaaaggatcttataattagggacggagatagta 72  Q
    ||||||| ||||||||||||||||||||||||||    
T  6784727 caaaagggtcttataattagggacggagatagta 6784760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 39 - 72
Target Start/End: Complemental strand, 21459015 - 21458982
Alignment:
Q  39 caaaaggatcttataattagggacggagatagta 72  Q
    |||||||||||||||||||||||||||| |||||    
T  21459015 caaaaggatcttataattagggacggaggtagta 21458982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 39 - 72
Target Start/End: Complemental strand, 24813635 - 24813602
Alignment:
Q  39 caaaaggatcttataattagggacggagatagta 72  Q
    |||||||||||||||||||||||||||| |||||    
T  24813635 caaaaggatcttataattagggacggaggtagta 24813602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 39 - 72
Target Start/End: Original strand, 28673298 - 28673331
Alignment:
Q  39 caaaaggatcttataattagggacggagatagta 72  Q
    |||||||||||||||||||||||||||| |||||    
T  28673298 caaaaggatcttataattagggacggaggtagta 28673331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 3 - 72
Target Start/End: Complemental strand, 31541096 - 31541027
Alignment:
Q  3 caaaggggtcttataaaaagagacaaannnnnnnnacaaaaggatcttataattagggacggagatagta 72  Q
    |||||||||||||||||||| ||||||          |||| ||||||||||||||||||||||||||||    
T  31541096 caaaggggtcttataaaaagggacaaattatttttttaaaatgatcttataattagggacggagatagta 31541027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 39 - 72
Target Start/End: Original strand, 50517526 - 50517559
Alignment:
Q  39 caaaaggatcttataattagggacggagatagta 72  Q
    |||||||||||||||||||||||||||| |||||    
T  50517526 caaaaggatcttataattagggacggaggtagta 50517559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 39 - 72
Target Start/End: Complemental strand, 53164196 - 53164163
Alignment:
Q  39 caaaaggatcttataattagggacggagatagta 72  Q
    |||||||||||||||||||||||||||| |||||    
T  53164196 caaaaggatcttataattagggacggaggtagta 53164163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 39 - 72
Target Start/End: Original strand, 54866537 - 54866570
Alignment:
Q  39 caaaaggatcttataattagggacggagatagta 72  Q
    |||||||||||||||||||||||||||| |||||    
T  54866537 caaaaggatcttataattagggacggaggtagta 54866570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 38 - 66
Target Start/End: Original strand, 39952534 - 39952562
Alignment:
Q  38 acaaaaggatcttataattagggacggag 66  Q
    |||||||||||||||||||||||||||||    
T  39952534 acaaaaggatcttataattagggacggag 39952562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 40 - 72
Target Start/End: Original strand, 42044257 - 42044289
Alignment:
Q  40 aaaaggatcttataattagggacggagatagta 72  Q
    ||||||||||||||||||||||||||| |||||    
T  42044257 aaaaggatcttataattagggacggaggtagta 42044289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 39 - 79
Target Start/End: Original strand, 53687001 - 53687041
Alignment:
Q  39 caaaaggatcttataattagggacggagatagtaataaata 79  Q
    ||||||| ||||||||||| |||| ||||||||||||||||    
T  53687001 caaaagggtcttataattatggacagagatagtaataaata 53687041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0236 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: scaffold0236
Description:

Target: scaffold0236; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 39 - 72
Target Start/End: Complemental strand, 17497 - 17464
Alignment:
Q  39 caaaaggatcttataattagggacggagatagta 72  Q
    ||||||||||||||||||||||||||||||||||    
T  17497 caaaaggatcttataattagggacggagatagta 17464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000008; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 13620820 - 13620897
Alignment:
Q  1 agcaaaggggtcttataaaaagagacaaannnnnnnnacaaaaggatcttataattagggacggagatagtaataaat 78  Q
    |||||||||||||||||||||| |||||          |||||||||||||||||||||||||||| |||||| ||||    
T  13620820 agcaaaggggtcttataaaaagggacaattttttttttcaaaaggatcttataattagggacggaggtagtaacaaat 13620897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 26866829 - 26866909
Alignment:
Q  1 agcaaaggggtcttataaaaagagacaaannnnnnnnacaaaaggatcttataattagggacggagatagtaataaatatt 81  Q
    |||||||||||||||||||||||||||||         ||||||| ||||||||||| |||||||| ||||| || |||||    
T  26866829 agcaaaggggtcttataaaaagagacaaaaaaaattctcaaaagggtcttataattaaggacggaggtagtactatatatt 26866909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 39 - 75
Target Start/End: Original strand, 55014972 - 55015008
Alignment:
Q  39 caaaaggatcttataattagggacggagatagtaata 75  Q
    ||||||||||||||||||| |||||||||||||||||    
T  55014972 caaaaggatcttataattatggacggagatagtaata 55015008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 39 - 72
Target Start/End: Complemental strand, 3085478 - 3085445
Alignment:
Q  39 caaaaggatcttataattagggacggagatagta 72  Q
    |||||||||||||||||||||||||||| |||||    
T  3085478 caaaaggatcttataattagggacggaggtagta 3085445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 39 - 72
Target Start/End: Original strand, 26889903 - 26889936
Alignment:
Q  39 caaaaggatcttataattagggacggagatagta 72  Q
    |||||||||||||||||||||||||||| |||||    
T  26889903 caaaaggatcttataattagggacggaggtagta 26889936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 39 - 72
Target Start/End: Original strand, 28298375 - 28298408
Alignment:
Q  39 caaaaggatcttataattagggacggagatagta 72  Q
    |||||||||||||||||||||||||||| |||||    
T  28298375 caaaaggatcttataattagggacggaggtagta 28298408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 39 - 72
Target Start/End: Original strand, 36901114 - 36901147
Alignment:
Q  39 caaaaggatcttataattagggacggagatagta 72  Q
    |||||||||||||||||||||||||||| |||||    
T  36901114 caaaaggatcttataattagggacggaggtagta 36901147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 39 - 72
Target Start/End: Original strand, 39114891 - 39114924
Alignment:
Q  39 caaaaggatcttataattagggacggagatagta 72  Q
    |||||||||||||||||||||||||||| |||||    
T  39114891 caaaaggatcttataattagggacggaggtagta 39114924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 39 - 79
Target Start/End: Original strand, 17610024 - 17610064
Alignment:
Q  39 caaaaggatcttataattagggacggagatagtaataaata 79  Q
    ||||||||||||||||||||||||||||  |||| ||||||    
T  17610024 caaaaggatcttataattagggacggagggagtattaaata 17610064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 39 - 75
Target Start/End: Complemental strand, 28495413 - 28495377
Alignment:
Q  39 caaaaggatcttataattagggacggagatagtaata 75  Q
    |||||||||||||||||||||||| ||| ||||||||    
T  28495413 caaaaggatcttataattagggacagaggtagtaata 28495377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 39 - 75
Target Start/End: Original strand, 53564360 - 53564396
Alignment:
Q  39 caaaaggatcttataattagggacggagatagtaata 75  Q
    ||||||| |||||||||||||||||||| ||||||||    
T  53564360 caaaagggtcttataattagggacggaggtagtaata 53564396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 47 - 83
Target Start/End: Original strand, 54878027 - 54878063
Alignment:
Q  47 tcttataattagggacggagatagtaataaatattat 83  Q
    |||||||||||||||||||| ||||||| ||||||||    
T  54878027 tcttataattagggacggaggtagtaattaatattat 54878063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 39 - 75
Target Start/End: Original strand, 55563131 - 55563167
Alignment:
Q  39 caaaaggatcttataattagggacggagatagtaata 75  Q
    ||||||| |||||||||||||||||||| ||||||||    
T  55563131 caaaagggtcttataattagggacggaggtagtaata 55563167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0250 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0250
Description:

Target: scaffold0250; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 8 - 72
Target Start/End: Original strand, 9399 - 9463
Alignment:
Q  8 gggtcttataaaaagagacaaannnnnnnnacaaaaggatcttataattagggacggagatagta 72  Q
    ||||||||||||||||||||||         |||||||||||||||||||||||||||| |||||    
T  9399 gggtcttataaaaagagacaaaaaaaattctcaaaaggatcttataattagggacggaggtagta 9463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0161 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0161
Description:

Target: scaffold0161; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 3508 - 3433
Alignment:
Q  1 agcaaaggggtcttataaaaagagacaaannnnnnnnacaaaaggatcttataattagggacggagatagtaataaa 77  Q
    |||||||||||||||||||||| ||||||         ||||||| |||||||||||||||||||| ||||||||||    
T  3508 agcaaaggggtcttataaaaagggacaaaaaaattct-caaaagggtcttataattagggacggaggtagtaataaa 3433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 3 - 79
Target Start/End: Complemental strand, 17317510 - 17317435
Alignment:
Q  3 caaaggggtcttataaaaagagacaaannnnnnnnacaaaaggatcttataattagggacggagatagtaataaata 79  Q
    |||||||||||||||||||| ||||||         ||||||||||||||||||||||||||||  |||||||||||    
T  17317510 caaaggggtcttataaaaagggacaaaaaaaattctcaaaaggatcttataattagggacggag-gagtaataaata 17317435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 39 - 73
Target Start/End: Original strand, 19845673 - 19845707
Alignment:
Q  39 caaaaggatcttataattagggacggagatagtaa 73  Q
    |||||||||||||||||||||||||||| ||||||    
T  19845673 caaaaggatcttataattagggacggaggtagtaa 19845707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 39 - 72
Target Start/End: Complemental strand, 7400162 - 7400129
Alignment:
Q  39 caaaaggatcttataattagggacggagatagta 72  Q
    |||||||||||||||||||||||||||| |||||    
T  7400162 caaaaggatcttataattagggacggaggtagta 7400129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 39 - 72
Target Start/End: Original strand, 9140537 - 9140570
Alignment:
Q  39 caaaaggatcttataattagggacggagatagta 72  Q
    ||||||| ||||||||||||||||||||||||||    
T  9140537 caaaagggtcttataattagggacggagatagta 9140570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 39 - 72
Target Start/End: Complemental strand, 19292872 - 19292839
Alignment:
Q  39 caaaaggatcttataattagggacggagatagta 72  Q
    |||||||||||||||||||||||||||| |||||    
T  19292872 caaaaggatcttataattagggacggaggtagta 19292839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 39 - 72
Target Start/End: Complemental strand, 21119590 - 21119557
Alignment:
Q  39 caaaaggatcttataattagggacggagatagta 72  Q
    |||||||||||||||||||||||||||| |||||    
T  21119590 caaaaggatcttataattagggacggaggtagta 21119557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 39 - 72
Target Start/End: Original strand, 22991748 - 22991781
Alignment:
Q  39 caaaaggatcttataattagggacggagatagta 72  Q
    |||||||||||||||||||||||||||| |||||    
T  22991748 caaaaggatcttataattagggacggaggtagta 22991781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 39 - 72
Target Start/End: Complemental strand, 27529262 - 27529229
Alignment:
Q  39 caaaaggatcttataattagggacggagatagta 72  Q
    |||||||||||||||||||||||||||| |||||    
T  27529262 caaaaggatcttataattagggacggaggtagta 27529229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 39 - 72
Target Start/End: Complemental strand, 29629749 - 29629716
Alignment:
Q  39 caaaaggatcttataattagggacggagatagta 72  Q
    ||||||| ||||||||||||||||||||||||||    
T  29629749 caaaaggttcttataattagggacggagatagta 29629716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 39 - 72
Target Start/End: Original strand, 41444467 - 41444500
Alignment:
Q  39 caaaaggatcttataattagggacggagatagta 72  Q
    |||||||||||||||||||||||||||| |||||    
T  41444467 caaaaggatcttataattagggacggaggtagta 41444500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0674 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0674
Description:

Target: scaffold0674; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 39 - 82
Target Start/End: Complemental strand, 5184 - 5141
Alignment:
Q  39 caaaaggatcttataattagggacggagatagtaataaatatta 82  Q
    ||||||| |||||||||||||||||||| |||||||||| ||||    
T  5184 caaaagggtcttataattagggacggaggtagtaataaacatta 5141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0549 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0549
Description:

Target: scaffold0549; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 39 - 82
Target Start/End: Original strand, 10186 - 10229
Alignment:
Q  39 caaaaggatcttataattagggacggagatagtaataaatatta 82  Q
    ||||||| |||||||||||||||||||| |||||||||| ||||    
T  10186 caaaagggtcttataattagggacggaggtagtaataaacatta 10229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0240 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0240
Description:

Target: scaffold0240; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 39 - 82
Target Start/End: Complemental strand, 18530 - 18487
Alignment:
Q  39 caaaaggatcttataattagggacggagatagtaataaatatta 82  Q
    ||||||| |||||||||||||||||||| |||||||||| ||||    
T  18530 caaaagggtcttataattagggacggaggtagtaataaacatta 18487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 21631073 - 21631152
Alignment:
Q  1 agcaaaggggtcttataaaaagagacaaannnnnnnnacaaaaggatcttataattagggacggagatagtaataaatat 80  Q
    |||||||||||||||||||||| |||||          ||||||| |||||||||||||||||||| |||||||| ||||    
T  21631073 agcaaaggggtcttataaaaagggacaatttgtttcttcaaaagggtcttataattagggacggaggtagtaatatatat 21631152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 39 - 69
Target Start/End: Original strand, 51467476 - 51467506
Alignment:
Q  39 caaaaggatcttataattagggacggagata 69  Q
    |||||||||||||||||||||||||||||||    
T  51467476 caaaaggatcttataattagggacggagata 51467506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 39 - 72
Target Start/End: Complemental strand, 3934639 - 3934606
Alignment:
Q  39 caaaaggatcttataattagggacggagatagta 72  Q
    |||||||||||||||||||||||||||| |||||    
T  3934639 caaaaggatcttataattagggacggaggtagta 3934606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 39 - 72
Target Start/End: Complemental strand, 22567099 - 22567066
Alignment:
Q  39 caaaaggatcttataattagggacggagatagta 72  Q
    |||||||||||||||||||||||||||| |||||    
T  22567099 caaaaggatcttataattagggacggaggtagta 22567066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 39 - 75
Target Start/End: Original strand, 25284071 - 25284107
Alignment:
Q  39 caaaaggatcttataattagggacggagatagtaata 75  Q
    |||||||||| ||||||||||||||||| ||||||||    
T  25284071 caaaaggatcctataattagggacggaggtagtaata 25284107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 39 - 72
Target Start/End: Complemental strand, 4778624 - 4778591
Alignment:
Q  39 caaaaggatcttataattagggacggagatagta 72  Q
    |||||||||||||||||||| |||||||||||||    
T  4778624 caaaaggatcttataattagagacggagatagta 4778591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 39 - 72
Target Start/End: Original strand, 41898500 - 41898533
Alignment:
Q  39 caaaaggatcttataattagggacggagatagta 72  Q
    |||||||||||||||||||||||||||| |||||    
T  41898500 caaaaggatcttataattagggacggaggtagta 41898533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 39 - 75
Target Start/End: Complemental strand, 44502653 - 44502617
Alignment:
Q  39 caaaaggatcttataattagggacggagatagtaata 75  Q
    ||||||||||||||||||||||||||||  |||||||    
T  44502653 caaaaggatcttataattagggacggagggagtaata 44502617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 39 - 75
Target Start/End: Original strand, 45283796 - 45283832
Alignment:
Q  39 caaaaggatcttataattagggacggagatagtaata 75  Q
    ||||||| |||||||||||||||||||| ||||||||    
T  45283796 caaaagggtcttataattagggacggaggtagtaata 45283832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 39 - 72
Target Start/End: Complemental strand, 9341871 - 9341838
Alignment:
Q  39 caaaaggatcttataattagggacggagatagta 72  Q
    |||||||||||||||||||||||||||| |||||    
T  9341871 caaaaggatcttataattagggacggaggtagta 9341838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 23604533 - 23604505
Alignment:
Q  1 agcaaaggggtcttataaaaagagacaaa 29  Q
    |||||||||||||||||||||||||||||    
T  23604533 agcaaaggggtcttataaaaagagacaaa 23604505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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