View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19047_low_5 (Length: 532)
Name: NF19047_low_5
Description: NF19047
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19047_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 413; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 19 - 517
Target Start/End: Complemental strand, 37925763 - 37925257
Alignment:
| Q |
19 |
agggtgtagttgatgatgtgtttatcggctatcgatttggtaaaatctagcatatgatacataggaagaaaagaaaaaa-gtttcaatttatgctgctct |
117 |
Q |
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| T |
37925763 |
agggtgtagttgatgatgtg------ggctatcgatttggtaaaatctagcatatgatacataggaagaaaagaaaaaaagtttcaatttatgctgctct |
37925670 |
T |
|
| Q |
118 |
tttcatttcaattgttacaattgtaccctgcacaagtctgcttccatgtttaatgcacaatcacccccaccatgatacaccagtggattgat-----aca |
212 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
37925669 |
tttcattttgattgttacaattgtaccctgcacaagtctgcttccatgtttaatgcacaatcacccccaccatgatacaccagtggattgattacataca |
37925570 |
T |
|
| Q |
213 |
ccattggttcaaagtgtgtaattaaagttcttgatattcacttttagccaattccacacactagacagtgatactgatacacttcaattacttatataaa |
312 |
Q |
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| T |
37925569 |
ccattggttcaaagtgtgtaattaaagttcttgatattcacttttagccaattccacacactagacagtgatactgatacacttcaattacttatataaa |
37925470 |
T |
|
| Q |
313 |
tttaaatgtattcataagcataacggcagaaacaagggtatgcctgtaatatagtttccattctaacagtaaaaatgtgtttattggagcctttcttttc |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
37925469 |
tttaaatgtattcataagcataacggcagaaacaagggtaagcctgtaatatagtttccattctaacagtaaaaatgtgtttattggagcttttcttttc |
37925370 |
T |
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| Q |
413 |
tcaaattttgcaggctaaggcttaatgaaagaacaaggagtcatggactggttaatttagctct--------cagatgattatgtttgttaaacttaact |
504 |
Q |
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| T |
37925369 |
tcaaattttgcaggctaaggcttaatgaaagaacaaggagtcatggactggttaatttagctctcagactctcagatgattgtgtttgttaaacttaact |
37925270 |
T |
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| Q |
505 |
atacttattaatg |
517 |
Q |
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||||||||||||| |
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| T |
37925269 |
atacttattaatg |
37925257 |
T |
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Back To:
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Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 296 - 335
Target Start/End: Complemental strand, 41472821 - 41472782
Alignment:
| Q |
296 |
tcaattacttatataaatttaaatgtattcataagcataa |
335 |
Q |
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|||| |||||||||||||||||||||| |||||||||||| |
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| T |
41472821 |
tcaaatacttatataaatttaaatgtactcataagcataa |
41472782 |
T |
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