View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19047_low_6 (Length: 517)
Name: NF19047_low_6
Description: NF19047
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19047_low_6 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 432; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 432; E-Value: 0
Query Start/End: Original strand, 9 - 498
Target Start/End: Original strand, 29238065 - 29238549
Alignment:
| Q |
9 |
ttatactcatcaaccataacatatttgcctgtattaacatggccattgaaggcaagacacttgtaacctttatcattgggagaatatcccaagaacacat |
108 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
29238065 |
ttatactcatcaaccataacatatttgcctgtattaacatggccattgaaggcaagacacttgtaacctttatgattgggagaatatcccaagaacacat |
29238164 |
T |
|
| Q |
109 |
cacaatcatcaaacctatattccagtttatgattagtgcatgagttgcaacaatgaagataaaatgaatgtttaaaatcaaaaactgtatccaaagattt |
208 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||| |
|
|
| T |
29238165 |
cacaatcatcaaacctatattccagtttatgattaatgcatgagttgcaacaatgaagataaaatgaatgtttaaaatc-aaaactatatccaaagattt |
29238263 |
T |
|
| Q |
209 |
tcaatgatatgaatttctagacgatatagggtctaaaccatacatttccttgcacactatcagatataatataacaaaacagtgttatctattttttctt |
308 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| | ||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
29238264 |
tcaatgatatgaatttctagacgatatagggtctaga--atacatttccttgtacactatcagatatactataacaaaacagtgttatctattttttctt |
29238361 |
T |
|
| Q |
309 |
ctcaatctaacaaacattaatatatatatccgttaactaagaaagaccaatttaatttgttaatccttgtaccttttttcaccacaaagtcaaattatga |
408 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29238362 |
ctcaatctaacaaacatta--atatatatccgttaactaagaaagaccaatttaatttgttaatccttgtaccttttttcaccacaaagtcaaattatga |
29238459 |
T |
|
| Q |
409 |
acaccgtcgacaacactatcattattgctgcaaatagacatcttctgtaaaccatcgacaacgccaccatcgacatgagcaccagcagca |
498 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29238460 |
acaccgtcgacaacactatcattattgctgcaaatagacatcttctgtaaactatcgacaacgccaccatcgacatgagcaccagcagca |
29238549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University