View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19047_low_8 (Length: 377)
Name: NF19047_low_8
Description: NF19047
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19047_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 337; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 12 - 360
Target Start/End: Original strand, 50611571 - 50611919
Alignment:
| Q |
12 |
agagaatagtccggttaaggagaaacagaaaaaatctagtaacaaaaaggctgctaaacctcctagagctccacgagggccgtcgttggatgctgctgac |
111 |
Q |
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| T |
50611571 |
agagaatagtccggttaaggagaaacggaaaaaatctagtaacaaaaaggctgctaaacctcctagagctccacgagggccgtcgttggatgctgctgac |
50611670 |
T |
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| Q |
112 |
caaaagctaattagggagattactcaacttgccatgctgaagcgtgcgagggtagagcgtatgaaagctttgaaaaagatgaaagctgctaaagcgtctt |
211 |
Q |
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| T |
50611671 |
caaaagctaattagggagattactcaacttgccatgctgaagcgtgcgagggtagagcgtatgaaagctttgaaaaagatgaaagctgctaaagcgtcat |
50611770 |
T |
|
| Q |
212 |
cgtctcccagtagcagcatgtttgccatggtttgcactgttgtcttctgtattgtgatcttatttcaaggtaaaatatgtaattaaagtagtatttgtca |
311 |
Q |
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| T |
50611771 |
cgtctcccagtagcagcatgtttgccatggtttgcactgttgtcttctgtattgtgatcttatttcaaggtaaaatatgtaattaaagtagtatttgtca |
50611870 |
T |
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| Q |
312 |
tggatatgtacttttttagcagtattctgcattgtcacatgatatgggt |
360 |
Q |
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| T |
50611871 |
tggatatgtacttttttagcagtattctgcattgtcacaagatatgggt |
50611919 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 67 - 121
Target Start/End: Original strand, 50616699 - 50616753
Alignment:
| Q |
67 |
aaacctcctagagctccacgagggccgtcgttggatgctgctgaccaaaagctaa |
121 |
Q |
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| T |
50616699 |
aaacctcctagagctccacgaggaccgtcattggatgctgctgaccaaaagctaa |
50616753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 55 - 185
Target Start/End: Complemental strand, 12804632 - 12804502
Alignment:
| Q |
55 |
aaaaaggctgctaaacctcctagagctccacgagggccgtcgttggatgctgctgaccaaaagctaattagggagattactcaacttgccatgctgaagc |
154 |
Q |
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||||||||||| |||||||| || |||||| ||| ||||| ||||| || || || || || ||||| | |||||| || ||||||| ||| |||||| |
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| T |
12804632 |
aaaaaggctgccaaacctccgcgacctccacaaggcccgtctttggacgcagcagatcataaactaataaaggagatgtctgaacttgcgatgttgaagc |
12804533 |
T |
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| Q |
155 |
gtgcgagggtagagcgtatgaaagctttgaa |
185 |
Q |
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| T |
12804532 |
gtgcaagaatagagcgtatgaaagcattgaa |
12804502 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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