View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19049_high_3 (Length: 512)
Name: NF19049_high_3
Description: NF19049
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19049_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 199; Significance: 1e-108; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 10 - 235
Target Start/End: Complemental strand, 31021521 - 31021293
Alignment:
| Q |
10 |
attatactatcttaatacgatccttgtcagt---gcttttgctattatactatgattgataatggctattattgcttttgctattaataataataaatac |
106 |
Q |
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| T |
31021521 |
attatactatcttaatatgatccttgtcagtactgcttttgctattatactatgatttataatggccattattgcttttgctattaataataataaatac |
31021422 |
T |
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| Q |
107 |
aatttcctatacattttcattgtcttcttcttttgtttgaaattggacaggtattttcattatcatgatatttggttcacttaccacttgtcttatctta |
206 |
Q |
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| T |
31021421 |
aatttcctacacattttcattgtcttcttcttttgtttgaaattggacaggtattttcattatcatgatatttggttcacttaccacttgtcttatctta |
31021322 |
T |
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| Q |
207 |
ttgttatgaatcctaaattcctactacca |
235 |
Q |
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| T |
31021321 |
ttgttatgaatcctaaattcctactacca |
31021293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 178; E-Value: 9e-96
Query Start/End: Original strand, 238 - 431
Target Start/End: Complemental strand, 31021174 - 31020981
Alignment:
| Q |
238 |
tgtcttttaaggtaaattccatggacgcaagttagtgtatcaaaaatagaaatttaacattagaaattattcattctattcttcaaaaagtcgaaaaggt |
337 |
Q |
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| T |
31021174 |
tgtcttttaaggtaaattccatggacgcaagttagtgtatcaaaaatagaaatttaacattagaaattattcattctatttttcaaaaagtcgaaaagga |
31021075 |
T |
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| Q |
338 |
gaaagatttatctctttttctacaatatattttgctttgtaaaatgagtggggtatatactttgaggatcgaattatgaaattgctttgtcctt |
431 |
Q |
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| T |
31021074 |
gaaagatttatctctttttctacaatatattttgctttgtaaaatgagtggggtatatactttgcggatcgaataatgaaattgctttgtcctt |
31020981 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 238 - 509
Target Start/End: Complemental strand, 31030994 - 31030735
Alignment:
| Q |
238 |
tgtcttttaaggtaaattccatggacgcaagttagtgtatcaaaaatagaaatttaacattagaaattattcattctattcttcaaaaagtcgaaaaggt |
337 |
Q |
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|||||||| |||||||| ||| | || ||||||||| ||||||||||| ||| | | |||||||||||| ||||||||| |||||||||| |||||| |
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| T |
31030994 |
tgtctttttaggtaaatgccaagaacacaagttagtatatcaaaaataaaaaaattatattagaaattatgcattctatttttcaaaaagtaaaaaagga |
31030895 |
T |
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| Q |
338 |
gaaaga-tttatctctttttctacaatatattttgctttgtaaaatgagtggggtatatactttgaggatcgaattatgaaattgctttgtccttatatg |
436 |
Q |
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| T |
31030894 |
gaaagattttatctctttttgtccaatttattttgctttgtaaaatgagtggggtata-------ag-------------aattgctttgtccttatatg |
31030815 |
T |
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| Q |
437 |
acaatatataagaattttaataatatatag-------ttgagacttgagaagcaccactgataatttcataggaactcag |
509 |
Q |
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| T |
31030814 |
acaatatataagaattttaataatatatagttgagacttgagacttgagaagcaccactgataatttcataggaactcag |
31030735 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 49 - 172
Target Start/End: Complemental strand, 31014553 - 31014427
Alignment:
| Q |
49 |
tattatactatgattgataatggctattattgcttttgctattaataataata----aatacaatttcctatacattttcattgtcttcttcttttgttt |
144 |
Q |
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||||||||||| |||||||||| |||||||||||||||||||||||| | | |||| | |||| ||||||||||| |||||||||||||||||| |
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| T |
31014553 |
tattatactatcgttgataatgggcattattgcttttgctattaataatcaaacccaaatata-tttcatatacattttctgtgtcttcttcttttgttt |
31014455 |
T |
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| Q |
145 |
gaaattggacaggtattttcattatcat |
172 |
Q |
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| T |
31014454 |
gaagttggacaggtattttcattatcat |
31014427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 432 - 512
Target Start/End: Complemental strand, 31020939 - 31020851
Alignment:
| Q |
432 |
atatgacaatatat-aagaattttaataatatatagttgagacttgaga-------agcaccactgataatttcataggaactcagtat |
512 |
Q |
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| T |
31020939 |
atatggcaatatattaagaattttaataatatatagttgagacttgagacttgagaagcaccactgataatttcataggaactcagtat |
31020851 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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