View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19049_low_1 (Length: 588)
Name: NF19049_low_1
Description: NF19049
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19049_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 557; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 557; E-Value: 0
Query Start/End: Original strand, 1 - 573
Target Start/End: Original strand, 38868539 - 38869111
Alignment:
| Q |
1 |
tcaatcaaacgtagaattctgagctggccctcattctttgagtctcaataatcagttagtagtaaaatggataaatctcatgttctggaccatccaattt |
100 |
Q |
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| T |
38868539 |
tcaatcaaacgtagaattctgagctggccctcattctttgagtctcaataatcagttagtagtaaaatggataaatctcatgttctggaccatccaattt |
38868638 |
T |
|
| Q |
101 |
tataggaagtattcacgagatgccaccgaaagaggcacaacatgctagctgcttcacatcacatgatcttgtctttatgatcacaatgcattaaaagacg |
200 |
Q |
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| T |
38868639 |
tataggaagtattcacgagatgccaccgaaagaggcacaacatgctagctgcttcacatcacatgatcttgtctttatgatcacaatgcattaaaagacg |
38868738 |
T |
|
| Q |
201 |
aaaaaggatctatataagcttgttattatgtgccacattcacaaagcaccttgctcagacaaataatgggttcattatttagggcataatagtcttgagt |
300 |
Q |
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| T |
38868739 |
aaaaaggatctatataagcttgttattatgtgccacattcacaaagcaccttgctcagacaaataatgggttcattgtttagggcataatagtcttgagt |
38868838 |
T |
|
| Q |
301 |
atcatagatgtatgtaaacatcatgcatattcaaatgattcagcttcaccatttgaaccaggtctcaatctagatatatgtgaacaaatcttcaaataat |
400 |
Q |
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| T |
38868839 |
atcatatatgtatgtaaacatcatgcatattcaaatgattcagcttcaccatttgaaccaggtctcaatctagatatatgtgaacaaatcttcaaataat |
38868938 |
T |
|
| Q |
401 |
cataatttgctgaaggcttgaaaaatgtctctcatattttttcctcaataatctagtggttttgaatttttcattatgtcaaagctatcttataatctta |
500 |
Q |
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| T |
38868939 |
cataatttgctgaaggcttgaaaaatgtctctcatattttttcctcaataatctagtggttttgaatttttcattatgtcaaagctatcttataatctta |
38869038 |
T |
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| Q |
501 |
catagattttcctcttaaagatattggaagtattcacgagaagccaccgaaagaggcacaacatacttgttca |
573 |
Q |
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| T |
38869039 |
catagattttcctcttaaagacaatggaagtattcacgagaagccaccgaaagaggcacaacatacttgttca |
38869111 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 379 - 435
Target Start/End: Original strand, 38866303 - 38866360
Alignment:
| Q |
379 |
tgtgaacaaatcttcaaataatcataa-tttgctgaaggcttgaaaaatgtctctcat |
435 |
Q |
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|||||||||||||| ||||||||||| |||| ||||| ||||||||||||||||||| |
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| T |
38866303 |
tgtgaacaaatctttcaataatcataactttggtgaagccttgaaaaatgtctctcat |
38866360 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 379 - 433
Target Start/End: Complemental strand, 38807104 - 38807049
Alignment:
| Q |
379 |
tgtgaacaaatcttcaaataatcataa-tttgctgaaggcttgaaaaatgtctctc |
433 |
Q |
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|||||||||||||| |||||||||| |||||||||| ||||||||||||||||| |
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| T |
38807104 |
tgtgaacaaatctttcgataatcataactttgctgaagccttgaaaaatgtctctc |
38807049 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 379 - 435
Target Start/End: Complemental strand, 38749774 - 38749717
Alignment:
| Q |
379 |
tgtgaacaaatcttcaaataatcataa-tttgctgaaggcttgaaaaatgtctctcat |
435 |
Q |
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||||||| |||||| ||||||||||| |||| ||||| ||||||||||||||||||| |
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| T |
38749774 |
tgtgaactaatctttcaataatcataactttggtgaagccttgaaaaatgtctctcat |
38749717 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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