View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19049_low_10 (Length: 221)
Name: NF19049_low_10
Description: NF19049
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19049_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 182; Significance: 1e-98; HSPs: 16)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 182; E-Value: 1e-98
Query Start/End: Original strand, 17 - 206
Target Start/End: Complemental strand, 4856679 - 4856490
Alignment:
| Q |
17 |
agcaaatacatggaaggaacatgtaacattgttgaataattcaattcatacacaattttgacatttagtaaatgacttagattgaccataaactcacatt |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
4856679 |
agcaaatacatggaaggaacatgtaacattgttgaataattcaattcatacacaattttgacatttagtacatgacttagattgaccataaactcacatt |
4856580 |
T |
|
| Q |
117 |
gagtctcaaactagtataaaaccagtatactccatatgtattatgcaccaacactaataattatatcacttcttaaaatggctaattcat |
206 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4856579 |
gagtctctaactagtataaaaccagtatactccatatgtattatgcaccaacactaataattatatcacttcttaaaatggctaattcat |
4856490 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 182; E-Value: 1e-98
Query Start/End: Original strand, 17 - 206
Target Start/End: Complemental strand, 4878414 - 4878225
Alignment:
| Q |
17 |
agcaaatacatggaaggaacatgtaacattgttgaataattcaattcatacacaattttgacatttagtaaatgacttagattgaccataaactcacatt |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
4878414 |
agcaaatacatggaaggaacatgtaacattgttgaataattcaattcatacacaattttgacatttagtacatgacttagattgaccataaactcacatt |
4878315 |
T |
|
| Q |
117 |
gagtctcaaactagtataaaaccagtatactccatatgtattatgcaccaacactaataattatatcacttcttaaaatggctaattcat |
206 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4878314 |
gagtctctaactagtataaaaccagtatactccatatgtattatgcaccaacactaataattatatcacttcttaaaatggctaattcat |
4878225 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 32 - 206
Target Start/End: Complemental strand, 4852693 - 4852519
Alignment:
| Q |
32 |
ggaacatgtaacattgttgaataattcaattcatacacaattttgacatttagtaaatgacttagattgaccataaactcacattgagtctcaaactagt |
131 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||| |
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| T |
4852693 |
ggaacttgtaacattgttgaataattcaattcatacacaattttgacatttagtaaatgacttagatcgaccataaactcacattgagtctctaactagt |
4852594 |
T |
|
| Q |
132 |
ataaaaccagtatactccatatgtattatgcaccaacactaataattatatcacttcttaaaatggctaattcat |
206 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4852593 |
ataaaaccagtatactccatatgtattatgcaccaacactaataattatatcacttcttaaaatggctaattcat |
4852519 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 38 - 201
Target Start/End: Complemental strand, 4835353 - 4835190
Alignment:
| Q |
38 |
tgtaacattgttgaataattcaattcatacacaattttgacatttagtaaatgacttagattgaccataaactcacattgagtctcaaactagtataaaa |
137 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||| || |||||||||| |
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| T |
4835353 |
tgtaacattgttgaataattcaattcatacacaattttgacatttagtaaatgactttgattgaccataaactcactttgagtctctaattagtataaaa |
4835254 |
T |
|
| Q |
138 |
ccagtatactccatatgtattatgcaccaacactaataattatatcacttcttaaaatggctaa |
201 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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|
| T |
4835253 |
ccagttaactccatatgtattatgcaccaacactaataataatatcacttcttaaaatggctaa |
4835190 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 38 - 201
Target Start/End: Complemental strand, 4842038 - 4841876
Alignment:
| Q |
38 |
tgtaacattgttgaataattcaattcatacacaattttgacatttagtaaatgacttagattgaccataaactcacattgagtctcaaactagtataaaa |
137 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||| || |||||||||| |
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| T |
4842038 |
tgtaacattgttgaataattcaattcatacataattttgacatttagtaaataacttagattgaccataaactcacattgagtctctaattagtataaaa |
4841939 |
T |
|
| Q |
138 |
ccagtatactccatatgtattatgcaccaacactaataattatatcacttcttaaaatggctaa |
201 |
Q |
| |
|
||||| | |||||||||||||||||||||||| |||||| ||||||||||||||||||||||| |
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|
| T |
4841938 |
ccagttaattccatatgtattatgcaccaacac-aataataatatcacttcttaaaatggctaa |
4841876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 79 - 204
Target Start/End: Complemental strand, 4826570 - 4826445
Alignment:
| Q |
79 |
atttagtaaatgacttagattgaccataaactcacattgagtctcaaactagtataaaaccagtatactccatatgtattatgcaccaacactaataatt |
178 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||| ||||||||||||||||||||||||||| |
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| T |
4826570 |
atttagtaaatgacttagattgaccataaactcacattgagtctctaactagtataaaaccagttaactctctatgtattatgcaccaacactaataata |
4826471 |
T |
|
| Q |
179 |
atatcacttcttaaaatggctaattc |
204 |
Q |
| |
|
||||||||||||||| |||||||||| |
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|
| T |
4826470 |
atatcacttcttaaagtggctaattc |
4826445 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 87 - 204
Target Start/End: Complemental strand, 4871689 - 4871573
Alignment:
| Q |
87 |
aatgacttagattgaccataaactcacattgagtctcaaactagtataaaaccagtatactccatatgtattatgcaccaacactaataattatatcact |
186 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||| ||||| |||||||||||||||||||||||||| |||||| |||||||| |
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|
| T |
4871689 |
aatgacttagattgaccataaactcacattgagtctctaactagtataaagccagttaactccatatgtattatgcaccaacac-aataataatatcact |
4871591 |
T |
|
| Q |
187 |
tcttaaaatggctaattc |
204 |
Q |
| |
|
|||||||||||||||||| |
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|
| T |
4871590 |
tcttaaaatggctaattc |
4871573 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 91 - 201
Target Start/End: Complemental strand, 4860904 - 4860793
Alignment:
| Q |
91 |
acttagattgaccataaactcacattgagtctcaaactagtataaaaccagtata-ctccatatgtattatgcaccaacactaataattatatcacttct |
189 |
Q |
| |
|
|||| ||||||| ||| |||||||||||||||| |||||||||||||||||| || |||| ||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4860904 |
actttgattgacgatagactcacattgagtctctaactagtataaaaccagtttaactccctatgtattatgcaccaacactaataattatatcacttct |
4860805 |
T |
|
| Q |
190 |
taaaatggctaa |
201 |
Q |
| |
|
|||||||||||| |
|
|
| T |
4860804 |
taaaatggctaa |
4860793 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 91 - 201
Target Start/End: Complemental strand, 4880911 - 4880800
Alignment:
| Q |
91 |
acttagattgaccataaactcacattgagtctcaaactagtataaaaccagtata-ctccatatgtattatgcaccaacactaataattatatcacttct |
189 |
Q |
| |
|
|||| ||||||| ||| |||||||||||||||| |||||||||||||||||| || |||| ||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4880911 |
actttgattgacgatagactcacattgagtctctaactagtataaaaccagtttaactccctatgtattatgcaccaacactaataattatatcacttct |
4880812 |
T |
|
| Q |
190 |
taaaatggctaa |
201 |
Q |
| |
|
|||||||||||| |
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|
| T |
4880811 |
taaaatggctaa |
4880800 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 38 - 111
Target Start/End: Complemental strand, 4842946 - 4842873
Alignment:
| Q |
38 |
tgtaacattgttgaataattcaattcatacacaattttgacatttagtaaatgacttagattgaccataaactc |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4842946 |
tgtaacattgttgaataattcaattcatacacaattttgacatttagtaaatgacttagattgaccataaactc |
4842873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 87 - 204
Target Start/End: Complemental strand, 4845930 - 4845814
Alignment:
| Q |
87 |
aatgacttagattgaccataaactcacattgagtctcaaactagtataaaaccagtatactccatatgtattatgcaccaacactaataattatatcact |
186 |
Q |
| |
|
|||||||||||||||||| ||| |||||||||||||| |||||||||||| ||||| ||| | |||||||||||||||||||| |||||| |||||||| |
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|
| T |
4845930 |
aatgacttagattgaccaaaaaatcacattgagtctctaactagtataaagccagttaactacctatgtattatgcaccaacac-aataataatatcact |
4845832 |
T |
|
| Q |
187 |
tcttaaaatggctaattc |
204 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
4845831 |
tcttaaaatggctaattc |
4845814 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 38 - 111
Target Start/End: Complemental strand, 4868642 - 4868569
Alignment:
| Q |
38 |
tgtaacattgttgaataattcaattcatacacaattttgacatttagtaaatgacttagattgaccataaactc |
111 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4868642 |
tgtaacattgttgaataattcaattcatacataattttgacatttagtaaatgacttagattgaccataaactc |
4868569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 79 - 119
Target Start/End: Complemental strand, 4837466 - 4837426
Alignment:
| Q |
79 |
atttagtaaatgacttagattgaccataaactcacattgag |
119 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
4837466 |
atttagtaaatgacttatattgaccataaactcacattgag |
4837426 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 32 - 73
Target Start/End: Complemental strand, 4846059 - 4846018
Alignment:
| Q |
32 |
ggaacatgtaacattgttgaataattcaattcatacacaatt |
73 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||| |||||| |
|
|
| T |
4846059 |
ggaacatgtaacattgttcaataattcaattcataaacaatt |
4846018 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 32 - 75
Target Start/End: Complemental strand, 4860949 - 4860906
Alignment:
| Q |
32 |
ggaacatgtaacattgttgaataattcaattcatacacaatttt |
75 |
Q |
| |
|
||||| |||||||||||||||||||||||||| | ||||||||| |
|
|
| T |
4860949 |
ggaacttgtaacattgttgaataattcaattcgtgcacaatttt |
4860906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 32 - 75
Target Start/End: Complemental strand, 4880956 - 4880913
Alignment:
| Q |
32 |
ggaacatgtaacattgttgaataattcaattcatacacaatttt |
75 |
Q |
| |
|
||||| |||||||||||||||||||||||||| | ||||||||| |
|
|
| T |
4880956 |
ggaacttgtaacattgttgaataattcaattcgtgcacaatttt |
4880913 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 108 - 204
Target Start/End: Original strand, 21703749 - 21703845
Alignment:
| Q |
108 |
actcacattgagtctcaaactagtataaaaccagtatactccatatgtattatgcaccaacactaataattatatcacttcttaaaatggctaattc |
204 |
Q |
| |
|
|||| ||||||||||| ||||||||||||||| || ||| | ||||| ||||||||||||||||||| | |||||||||||||||||||||||||| |
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|
| T |
21703749 |
actcccattgagtctctaactagtataaaaccggttaacttcctatgtcttatgcaccaacactaatattaatatcacttcttaaaatggctaattc |
21703845 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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