View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19049_low_2 (Length: 570)
Name: NF19049_low_2
Description: NF19049
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19049_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 495; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 495; E-Value: 0
Query Start/End: Original strand, 11 - 553
Target Start/End: Complemental strand, 28128915 - 28128373
Alignment:
| Q |
11 |
gaatcacggtctctggataagaagaaaggttctatttttgctgttgatgttgaaatgatgaatatatctgctgggctaggtggtggggttgacgctatgg |
110 |
Q |
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| T |
28128915 |
gaatcacggaatcttgataagaagaaaggttctatttttgctgttgatgttgaaatgttgaatatatctgctgggctaggagatggagttgaagctatgg |
28128816 |
T |
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| Q |
111 |
ttcaagtgcagtcaattttctatgagaatgctagtataggagtgctatttgaaggactaatgatcaattttaatggggccagaatcttgaagagtagtag |
210 |
Q |
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| T |
28128815 |
ttcaagtgcagtcaattttctctgagaatgctagtataggagtgctatttgaaggactaatgatcaattttaatggggccagaatcttgaagagtagtag |
28128716 |
T |
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| Q |
211 |
gatgcaaatttcacgaattcctagcatatctgctagtgcatctgatgcaaagggacctgcagccacaacttgggactgggtaattcaaggtctctatgtt |
310 |
Q |
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| T |
28128715 |
gatgcaaatttcacgaattcctagcatatctgctagtgcatctgatgcaaagggacctgcagccacaacatgggactgggtaattcaaggtctctatgtc |
28128616 |
T |
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| Q |
311 |
cacatttgtttgccatacagattggaattgcgtgctattgatgatgctcttgaggatatgttgcgagcgttaaagcttattgtggcagcaaaaactaatt |
410 |
Q |
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| T |
28128615 |
tacatttgtttgccatacagattggaattgcgtgctattgatgatgctcttgaggatatgttgcgagcgttaaagcttattgtggcagcaaaaactaatt |
28128516 |
T |
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| Q |
411 |
tgatttttcctgtgaaaaaggacagttctaaggccaaaaaacctagttcatcaaaatttggatgcataaagtttttcttacgcaagttaactgccgacat |
510 |
Q |
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| T |
28128515 |
tgatttttcctgtgaaaaaggacagttctaaggccaaaaaacctagttcatcaaaatttggatgcataaagtttttcttacgcaagttaactgccgacat |
28128416 |
T |
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| Q |
511 |
tgaagaggaaccaatccaaggatggcttgatgaacactacaag |
553 |
Q |
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| T |
28128415 |
tgaagaggaaccaatccaaggatggcttgatgaacactacaag |
28128373 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 134; Significance: 2e-69; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 44 - 549
Target Start/End: Original strand, 45832604 - 45833109
Alignment:
| Q |
44 |
atttttgctgttgatgttgaaatgatgaatatatctgctgggctaggtggtggggttgacgctatggttcaagtgcagtcaattttctatgagaatgcta |
143 |
Q |
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| T |
45832604 |
atttttgctgttgatgtagaaatgttaagtatttcggctgggctaggagatggagttgatggtatggttcaggtgcagtcaattttctctgaaaatgctc |
45832703 |
T |
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| Q |
144 |
gtataggagtgctatttgaaggactaatgatcaattttaatggggccagaatcttgaagagtagtaggatgcaaatttcacgaattcctagcatatctgc |
243 |
Q |
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| T |
45832704 |
gtataggagtactccttgaaggacttatgctttgcttcaacggggctaggatcctcaagagtagtcgaatgcaaatttcacgaattcccagtgtctctgc |
45832803 |
T |
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| Q |
244 |
tagtgcatctgatgcaaagggacctgcagccacaacttgggactgggtaattcaaggtctctatgttcacatttgtttgccatacagattggaattgcgt |
343 |
Q |
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| T |
45832804 |
tagtccatctgatgcaaaagagcatgtggtcacaacatgggattgggtaatccaaggtcttgaagttcacatttgcatgccatacagattgcaattgcgt |
45832903 |
T |
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| Q |
344 |
gctattgatgatgctcttgaggatatgttgcgagcgttaaagcttattgtggcagcaaaaactaatttgatttttcctgtgaaaaaggacagttctaagg |
443 |
Q |
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|| |||||||||| | ||||||||||| |||| | ||||| || | || | || || |||||||||||||||||||| || ||||| ||||| | |
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| T |
45832904 |
gccattgatgatgtcatcgaggatatgttacgaggtctgaagctcataattgctaccaagacaaatttgatttttcctgtgaagaaagacagctctaaag |
45833003 |
T |
|
| Q |
444 |
ccaaaaaacctagttcatcaaaatttggatgcataaagtttttcttacgcaagttaactgccgacattgaagaggaaccaatccaaggatggcttgatga |
543 |
Q |
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|| ||||| ||||| | ||||||||||| |||| |||| | ||||||||||||||||||| || |||||||||||||| || |||||||||||||| |
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| T |
45833004 |
ttaagaaacccagttctgtacaatttggatgcctaaaattttgcatacgcaagttaactgccgatatcgaagaggaaccaatgcagggatggcttgatga |
45833103 |
T |
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| Q |
544 |
acacta |
549 |
Q |
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||||| |
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| T |
45833104 |
gcacta |
45833109 |
T |
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