View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19049_low_4 (Length: 463)
Name: NF19049_low_4
Description: NF19049
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19049_low_4 |
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| [»] scaffold0001 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 240; Significance: 1e-133; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 19 - 274
Target Start/End: Original strand, 7246219 - 7246474
Alignment:
| Q |
19 |
ctaaagtccttgtcatcatgagaataagatgttgagtccaaaaagaggtgatgagtagtagcatcttgagtttgaaaatgagaatgatcaagtggtttag |
118 |
Q |
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| T |
7246219 |
ctaaagtccttgtcatcctgagaataagatgttgagtccaaaaagaggtgatgagtagtagcatcttgagtttgaaaatgagaatgatcaagtgggttag |
7246318 |
T |
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| Q |
119 |
aagaggtaattgattgagagtaatagtaagggtttaaagaagagttttgataggattgtgaaaaagattgtgactgatcatgacaagccatggatgaagt |
218 |
Q |
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| T |
7246319 |
tagaggtaattgattgagagtaatagtaagggtttaaagaagagttttggtaggattgtgaaaaagattgtgactgatcatgacaagccatggatgaagt |
7246418 |
T |
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| Q |
219 |
agagaaagggaaagaagaaggtgagtttatgctgctgctgttgttgttcaaggaga |
274 |
Q |
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| T |
7246419 |
agagaaagggaaagaagaaggtgagtttatgctgctgctgttgttgttcaaggaga |
7246474 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 121; E-Value: 8e-62
Query Start/End: Original strand, 332 - 452
Target Start/End: Original strand, 7246532 - 7246652
Alignment:
| Q |
332 |
aagaagaaactactagttccacaggctttcttgaacggtttctacctctgtgcatgtgtctttcacagtactttgagtctggatatgcttcctttgagca |
431 |
Q |
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| T |
7246532 |
aagaagaaactactagttccacaggctttcttgaacggtttctacctctgtgcatgtgtctttcacagtactttgagtctggatatgcttcctttgagca |
7246631 |
T |
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| Q |
432 |
tctccatttcttgccatctgt |
452 |
Q |
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| T |
7246632 |
tctccatttcttgccatctgt |
7246652 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 348 - 404
Target Start/End: Original strand, 13137222 - 13137278
Alignment:
| Q |
348 |
ttccacaggctttcttgaacggtttctacctctgtgcatgtgtctttcacagtactt |
404 |
Q |
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| T |
13137222 |
ttccacaagctttcttgaacgatttcgacctctgtgcatgtgacgttcacaatactt |
13137278 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 73; Significance: 4e-33; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 348 - 452
Target Start/End: Complemental strand, 52052075 - 52051971
Alignment:
| Q |
348 |
ttccacaggctttcttgaacggtttctacctctgtgcatgtgtctttcacagtactttgagtctggatatgcttcctttgagcatctccatttcttgcca |
447 |
Q |
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| T |
52052075 |
ttccacaggctttcttgaacggtttttccctctatgcatgtgcctttcacagtactttgaatctggatatgcttcttttgaacatctccatttctttcca |
52051976 |
T |
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| Q |
448 |
tctgt |
452 |
Q |
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||||| |
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| T |
52051975 |
tctgt |
52051971 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 69; Significance: 9e-31; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 348 - 452
Target Start/End: Original strand, 18199801 - 18199905
Alignment:
| Q |
348 |
ttccacaggctttcttgaacggtttctacctctgtgcatgtgtctttcacagtactttgagtctggatatgcttcctttgagcatctccatttcttgcca |
447 |
Q |
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||||||||||||||||||||||||| | ||||| |||||||||||||||||||| || || |||||||||||||| ||||||||||||||||| || ||| |
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| T |
18199801 |
ttccacaggctttcttgaacggttttttcctctatgcatgtgtctttcacagtatttagaatctggatatgcttcttttgagcatctccatttttttcca |
18199900 |
T |
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| Q |
448 |
tctgt |
452 |
Q |
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||||| |
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| T |
18199901 |
tctgt |
18199905 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 346 - 405
Target Start/End: Complemental strand, 42092016 - 42091957
Alignment:
| Q |
346 |
agttccacaggctttcttgaacggtttctacctctgtgcatgtgtctttcacagtacttt |
405 |
Q |
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| T |
42092016 |
agttccacaggctttcttgaacggtttctaccacgatgcatgtgtctttcacagtacttt |
42091957 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0001 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0001
Description:
Target: scaffold0001; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 348 - 458
Target Start/End: Complemental strand, 399189 - 399079
Alignment:
| Q |
348 |
ttccacaggctttcttgaacggtttctacctctgtgcatgtgtctttcacagtactttgagtctggatatgcttcctttgagcatctccatttcttgcca |
447 |
Q |
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| T |
399189 |
ttccacaggctttcttgaacggttgcggccacggtgcatgtggcgctcacagtacttggagtctgggtatgcttccttcgagcacctccacttttttcca |
399090 |
T |
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| Q |
448 |
tctgtgctcct |
458 |
Q |
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| T |
399089 |
tcagtcctcct |
399079 |
T |
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