View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19049_low_5 (Length: 437)
Name: NF19049_low_5
Description: NF19049
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19049_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 387; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 8 - 422
Target Start/End: Original strand, 3039037 - 3039451
Alignment:
| Q |
8 |
aataatatcatgaattgcatagaatttttaagatgcatgctattttcatagattaaaaagcaaggaacataacaaatgacgtaccatgtttggcatcact |
107 |
Q |
| |
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|||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3039037 |
aataatatcatgaactgcatagaatttttatgatgcatgctattttcatagattaaaaagcaaggaacataacaaatgacgtaccatgtttggcatcact |
3039136 |
T |
|
| Q |
108 |
tacatgatgcataatggaagttgaagaagagttttcattgctatcaagatttccaagcctaaccttatccacctttattctaagagcaataagaaaatta |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||| |
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| T |
3039137 |
tacatgatgcataatggaagttgaagaagagttttcattgctatcaagatttccaaacctaaccttatcaacctttattctaagagcaataagaaaatta |
3039236 |
T |
|
| Q |
208 |
atttgcttgcttaactcctcagcttcctcaacaacttccttcatcatcttcttataaaatccattaaacttgttaaactcaaaatcaagtttcctaaaaa |
307 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||| |
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| T |
3039237 |
atttgcttgcttaactcctcagcttcctcaacaacttccttcatcatcttcttataaaatccattaaccttgttaaactcaaaatcaagtttcctgaaaa |
3039336 |
T |
|
| Q |
308 |
agacaagatctctttctgctccatcttcataagggtttaaaaacttggtttgatacaacacttttgaatcttcatctccttgtgaccgaacaagtattac |
407 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3039337 |
agacaagatctctttctgctccatcttcataagggtttaaaaacttggtttgatacaacacttttgaatcttcatctccttgtgaccgaacaagtattac |
3039436 |
T |
|
| Q |
408 |
ttcgtcctcattcgt |
422 |
Q |
| |
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||| ||||||||||| |
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| T |
3039437 |
ttcatcctcattcgt |
3039451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 178; E-Value: 7e-96
Query Start/End: Original strand, 10 - 420
Target Start/End: Original strand, 3020720 - 3021127
Alignment:
| Q |
10 |
taatatcatgaattgcatagaatttttaagatgcatgctattttcatagattaaaaagcaaggaacataacaa-atgacgtaccatgtttggcatcactt |
108 |
Q |
| |
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|||||||||||||||||||||||| |||||||||||||| | |||||||||||| || || ||||||| ||| | ||||||||| |||||| | |
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| T |
3020720 |
taatatcatgaattgcatagaattgttaagatgcatgctcat---atagattaaaaaaaaac-aatataacaatatgccttaccatgttcagcatcatct |
3020815 |
T |
|
| Q |
109 |
acatgatgcataatggaagttgaagaagagttttcattgctatcaagatttccaagcctaaccttatccacctttattctaagagcaataagaaaattaa |
208 |
Q |
| |
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||||||||||||| ||| ||| |||| || ||||||||||||||| |||||||| || ||||||||| ||||||||||||| |||||||||||| || | |
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| T |
3020816 |
acatgatgcataaaggatgttaaagatgaaatttcattgctatcaacatttccaaacccaaccttatcaacctttattctaaaagcaataagaaagttca |
3020915 |
T |
|
| Q |
209 |
tttgcttgcttaactcctcagcttcctcaacaacttccttcatcatcttcttataaaatccattaaacttgttaaactcaaaatcaagtttcctaaaaaa |
308 |
Q |
| |
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|||| || ||||||||||||||||| |||||||||||||||| ||||||| |||||||| |||||| ||| ||||||||||||||||||||| | ||||| |
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| T |
3020916 |
tttgtttacttaactcctcagcttcatcaacaacttccttcaccatcttcctataaaatgcattaaccttattaaactcaaaatcaagtttcttgaaaaa |
3021015 |
T |
|
| Q |
309 |
gacaagatctctttctgctccatcttcataagggtttaaaaacttggtttgatacaacacttttgaatcttcatctccttgtgaccgaacaagtattact |
408 |
Q |
| |
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| ||| ||||||||||||||||||||| |||| || |||||| |||||||||| ||| |||||||||| ||| |||||| || ||||||||||||||| |
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| T |
3021016 |
taaaagttctctttctgctccatcttcagaaggcttcaaaaacatggtttgatataacccttttgaatcatcacctccttcggaacgaacaagtattact |
3021115 |
T |
|
| Q |
409 |
tcgtcctcattc |
420 |
Q |
| |
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|| ||||||||| |
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|
| T |
3021116 |
tcatcctcattc |
3021127 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 148; E-Value: 6e-78
Query Start/End: Original strand, 89 - 420
Target Start/End: Original strand, 3010738 - 3011069
Alignment:
| Q |
89 |
taccatgtttggcatcacttacatgatgcataatggaagttgaagaagagttttcattgctatcaagatttccaagcctaaccttatccacctttattct |
188 |
Q |
| |
|
|||||||||| |||||| | |||||||||||| ||| |||||||| ||| |||||||||| |||| |||| ||| || | ||||||| ||||||||||| |
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|
| T |
3010738 |
taccatgtttagcatcatcttcatgatgcataaaggatgttgaagatgagatttcattgctgtcaaaattttcaaacccagccttatcaacctttattct |
3010837 |
T |
|
| Q |
189 |
aagagcaataagaaaattaatttgcttgcttaactcctcagcttcctcaacaacttccttcatcatcttcttataaaatccattaaacttgttaaactca |
288 |
Q |
| |
|
|| ||||||||||||||| ||||| | |||||||| |||||||| | |||||||||||||| |||||||||||||||| |||||| ||||||||||||| |
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|
| T |
3010838 |
aaaagcaataagaaaattcatttgttcacttaactcatcagcttcatgaacaacttccttcaccatcttcttataaaatgcattaaccttgttaaactca |
3010937 |
T |
|
| Q |
289 |
aaatcaagtttcctaaaaaagacaagatctctttctgctccatcttcataagggtttaaaaacttggtttgatacaacacttttgaatcttcatctcctt |
388 |
Q |
| |
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| |||||||||| | ||||| |||||||| ||||||||||||||||| |||| ||||||||| |||||||||||| | |||||||| || | || || |
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| T |
3010938 |
atatcaagtttcttgaaaaactcaagatctatttctgctccatcttcagaaggctttaaaaacatggtttgatacatcccttttgaagctaaaccttgtt |
3011037 |
T |
|
| Q |
389 |
gtgaccgaacaagtattacttcgtcctcattc |
420 |
Q |
| |
|
||| ||||||||||||||||| ||||||||| |
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|
| T |
3011038 |
ctgaacgaacaagtattacttcatcctcattc |
3011069 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 286; Significance: 1e-160; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 8 - 422
Target Start/End: Complemental strand, 20058459 - 20058041
Alignment:
| Q |
8 |
aataatatcatgaattgcatagaatttttaagatgcatgc----tattttcatagattaaaaagcaaggaacataacaaatgacgtaccatgtttggcat |
103 |
Q |
| |
|
||||| |||||||||||| ||||||||||| ||||||||| | |||||||||||| ||||||||||||||||||| |||| ||||||||||||||| |
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| T |
20058459 |
aataacatcatgaattgcttagaatttttatgatgcatgcatgctcatttcatagattagaaagcaaggaacataacaattgacttaccatgtttggcat |
20058360 |
T |
|
| Q |
104 |
cacttacatgatgcataatggaagttgaagaagagttttcattgctatcaagatttccaagcctaaccttatccacctttattctaagagcaataagaaa |
203 |
Q |
| |
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|| | ||||||| | ||||||||||||||||||||||||||||||||||||||||| || | ||||||||||||||||||||||||||||||||||| |
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|
| T |
20058359 |
cattcacatgatctaaaatggaagttgaagaagagttttcattgctatcaagatttctaaccacgaccttatccacctttattctaagagcaataagaaa |
20058260 |
T |
|
| Q |
204 |
attaatttgcttgcttaactcctcagcttcctcaacaacttccttcatcatcttcttataaaatccattaaacttgttaaactcaaaatcaagtttccta |
303 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| |
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|
| T |
20058259 |
attaatttgcttgcttaactcctcagcttcctcaacaacttccttcatcatcttcttataaaatccattaaccttgttaaactcaacatcaagtttcctg |
20058160 |
T |
|
| Q |
304 |
aaaaagacaagatctctttctgctccatcttcataagggtttaaaaacttggtttgatacaacacttttgaatcttcatctccttgtgaccgaacaagta |
403 |
Q |
| |
|
||||||| ||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| || |||||||||| |
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|
| T |
20058159 |
aaaaagataagatctctctctgctccatcttcataagggtttaaaaacatggtttgatacaacacttttgaatcttcacttccttccgaacgaacaagta |
20058060 |
T |
|
| Q |
404 |
ttacttcgtcctcattcgt |
422 |
Q |
| |
|
||||||||||||||||||| |
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|
| T |
20058059 |
ttacttcgtcctcattcgt |
20058041 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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