View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19049_low_6 (Length: 384)
Name: NF19049_low_6
Description: NF19049
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19049_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 201; Significance: 1e-109; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 27 - 263
Target Start/End: Complemental strand, 48044121 - 48043874
Alignment:
| Q |
27 |
acaaatagaatcaattgcatcaatgtgaaaactattaagacgatattgtcacatcaatgttgttacaaacttgtaatcgaaa----------ctactacc |
116 |
Q |
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| T |
48044121 |
acaaatagaatcaattgcatcaatgtgaaaactattaagacgatattgtcacatcaatgttgttacaaacttgtaatcggaaggagcacctactactacc |
48044022 |
T |
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| Q |
117 |
taatttgaacttcatttagatcatttatatggccaggtatcacagaggacaattatcatccatttttt-gtgctggaactagcaggtatgatgttgatgc |
215 |
Q |
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| T |
48044021 |
taatttgaacttcatttagatcatttatatggccaggtatcacagaggacaattatcatccatttttttgtgctggaactagcaggtatgatgttgatgc |
48043922 |
T |
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| Q |
216 |
agccgcttatgagaatttacctgcttcaagaagtgaactccatgactt |
263 |
Q |
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| T |
48043921 |
agccgcttatgagaatttacctgcttcaagaagtgaactccatgactt |
48043874 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 265 - 303
Target Start/End: Complemental strand, 48043832 - 48043794
Alignment:
| Q |
265 |
aaagaatggagtgataagggtgatctcagattcaattcc |
303 |
Q |
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| T |
48043832 |
aaagaatggagtgataagggtgatctcagattcgattcc |
48043794 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 32
Target Start/End: Complemental strand, 48044167 - 48044136
Alignment:
| Q |
1 |
ccaaatggcatgtcacaatctgcatcacaaat |
32 |
Q |
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| T |
48044167 |
ccaaatggcatgtcacaatctgcatcacaaat |
48044136 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 40 - 99
Target Start/End: Complemental strand, 48057306 - 48057247
Alignment:
| Q |
40 |
attgcatcaatgtgaaaactattaagacgatattgtcacatcaatgttgttacaaacttg |
99 |
Q |
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| T |
48057306 |
attgcatcaatgtgaaaactattaggatgatattgtttcatcaattttgtagcaaacttg |
48057247 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 166 - 258
Target Start/End: Complemental strand, 48057095 - 48057003
Alignment:
| Q |
166 |
caattatcatccattttttgtgctggaactagcaggtatgatgttgatgcagccgcttatgagaatttacctgcttcaagaagtgaactccat |
258 |
Q |
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| T |
48057095 |
caattatcatccactttttttgccggaactctaagttacgttgttgatgcaggtgattatgagaatctacctgtctcaagaaatgaactccat |
48057003 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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