View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19049_low_9 (Length: 243)
Name: NF19049_low_9
Description: NF19049
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19049_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 139; Significance: 7e-73; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 26 - 224
Target Start/End: Complemental strand, 17333163 - 17332967
Alignment:
| Q |
26 |
gagtgatgctaaatggtacgagggcttcaacgcacgaagttgcacgacttgttacactacaagcgatttactttattattaaacttattgttagcttatt |
125 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||| ||||||||||||||||||| ||||||||| |
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| T |
17333163 |
gagtgatgctaaatggtacgagggcttcaacgcacgaagttgcacgacttgctacactacaagcaatttattttattattaaacttattgctagcttatt |
17333064 |
T |
|
| Q |
126 |
ggtgcttttgtgttcttatatataacatatagtnnnnnnnnnnnnnttgttaccaaagagatatcatacacatctaaggatatccacctttccacatgt |
224 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17333063 |
ggtgcttttgtgttcttatatataacatatagt--aaaaaaaaaaattgttaccaaagagatatcatacacatctaaggatatccacctttccacatgt |
17332967 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 23 - 224
Target Start/End: Original strand, 37246799 - 37247001
Alignment:
| Q |
23 |
taagagtgatgctaaatggtacgagggcttcaacgcacgaagttgcacgacttgttacactacaagcgatttactttattattaaacttattgttagctt |
122 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||| |||||| |
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| T |
37246799 |
taagagtgatgctaaatggtacgagggcttcaacgcacgaagttgcacgacttgctacactacaagcaatttactttattattaaacttattactagctt |
37246898 |
T |
|
| Q |
123 |
attggtgcttttgtgttcttatatataacatatagt-nnnnnnnnnnnnnttgttaccaaagagatatcatacacatctaaggatatccacctttccaca |
221 |
Q |
| |
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|||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37246899 |
attggtgcttttgtgttcttatctataacatatagtaaaaaaaaaaaaaattgttaccaaagagatatcatacacatctaaggatatccacctttccaca |
37246998 |
T |
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| Q |
222 |
tgt |
224 |
Q |
| |
|
||| |
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|
| T |
37246999 |
tgt |
37247001 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 67 - 224
Target Start/End: Complemental strand, 28747501 - 28747349
Alignment:
| Q |
67 |
gcacgacttgttacactacaagcgatttactttattattaaacttattgttagcttattggtgcttttgtgttcttatatataacatatagtnnnnnnnn |
166 |
Q |
| |
|
|||||||||| |||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||| |
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| T |
28747501 |
gcacgacttgctacactacaagcaatttactttattattaaacttattgctagcttattggtgcttttgtgttcttatatataacatacagt-----aaa |
28747407 |
T |
|
| Q |
167 |
nnnnnttgttaccaaagagatatcatacacatctaaggatatccacctttccacatgt |
224 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
28747406 |
aaaatttgttaccaaagagatatcatacacatctaaggatatccacctttccacatgt |
28747349 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 30 - 158
Target Start/End: Original strand, 17335295 - 17335424
Alignment:
| Q |
30 |
gatgctaaatggtacgagggcttcaac-gcacgaagttgcacgacttgttacactacaagcgatttactttattattaaacttattgttagcttattggt |
128 |
Q |
| |
|
|||||||||||||||||| ||||||| ||||||||| ||||||||||||| ||| || || |||||||||| |||| |||||||| |||||||||||| |
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| T |
17335295 |
gatgctaaatggtacgagagcttcaagtgcacgaagtcgcacgacttgttaaactgcaggcaatttactttactattggacttattgctagcttattggt |
17335394 |
T |
|
| Q |
129 |
gcttttgtgttcttatatataacatatagt |
158 |
Q |
| |
|
| | |||||||||||||||||||||||||| |
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|
| T |
17335395 |
gttattgtgttcttatatataacatatagt |
17335424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 30 - 158
Target Start/End: Complemental strand, 39602144 - 39602015
Alignment:
| Q |
30 |
gatgctaaatggtacgagggcttcaa-cgcacgaagttgcacgacttgttacactacaagcgatttactttattattaaacttattgttagcttattggt |
128 |
Q |
| |
|
|||||||||||||||||| | ||||| ||||||| || ||||||||||||| | |||| || |||||||||| |||| |||||||| |||||||||||| |
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| T |
39602144 |
gatgctaaatggtacgagagtttcaagcgcacgatgtcgcacgacttgttaaattacaggcaatttactttactattggacttattgctagcttattggt |
39602045 |
T |
|
| Q |
129 |
gcttttgtgttcttatatataacatatagt |
158 |
Q |
| |
|
| | |||| ||||||||||||||||||||| |
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|
| T |
39602044 |
gttattgtattcttatatataacatatagt |
39602015 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 138; Significance: 3e-72; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 1 - 158
Target Start/End: Complemental strand, 34658330 - 34658173
Alignment:
| Q |
1 |
agttgcttgatttatttctttataagagtgatgctaaatggtacgagggcttcaacgcacgaagttgcacgacttgttacactacaagcgatttacttta |
100 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
34658330 |
agttgcttgatttatttttttataagagtgatgctaaatggtacgagggcttcaacgcacgaagttgcacgacttgttacactacaagcaatttacttta |
34658231 |
T |
|
| Q |
101 |
ttattaaacttattgttagcttattggtgcttttgtgttcttatatataacatatagt |
158 |
Q |
| |
|
|| |||||||||||| ||| |||||||||||||||||||||||||||||||||||||| |
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|
| T |
34658230 |
ttgttaaacttattgctagtttattggtgcttttgtgttcttatatataacatatagt |
34658173 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 181 - 224
Target Start/End: Complemental strand, 34658146 - 34658103
Alignment:
| Q |
181 |
aagagatatcatacacatctaaggatatccacctttccacatgt |
224 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||| |
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|
| T |
34658146 |
aagagatatcatacacatataaggatatccacctttccacatgt |
34658103 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 99; Significance: 5e-49; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 66 - 224
Target Start/End: Complemental strand, 53030909 - 53030755
Alignment:
| Q |
66 |
tgcacgacttgttacactacaagcgatttactttattattaaacttattgttagcttattggtgcttttgtgttcttatatataacatatagtnnnnnnn |
165 |
Q |
| |
|
||||||||||| |||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
53030909 |
tgcacgacttgctacactacaagcaatttactttattattaaacttattgctagcttattggtgcttttgtgttcttatatataacatatagt----aaa |
53030814 |
T |
|
| Q |
166 |
nnnnnnttgttaccaaagagatatcatacacatctaaggatatccacctttccacatgt |
224 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
53030813 |
aaaaaattgttaccaaagagatctcatacacatctaaggatatccacctttccacatgt |
53030755 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 43 - 149
Target Start/End: Complemental strand, 49421548 - 49421441
Alignment:
| Q |
43 |
acgagggcttcaacgcacgaagttgcacgacttgttacactacaagcgatttactttattattaaacttatt-gttagcttattggtgcttttgtgttct |
141 |
Q |
| |
|
|||||| | |||| ||||||||| ||||||||||||| || || || |||||||||||||||| | ||||| | || |||||||||| ||||||||||| |
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|
| T |
49421548 |
acgaggccctcaatgcacgaagtcgcacgacttgttaaaccacgtgcaatttactttattattagatttattggctaacttattggtgtttttgtgttct |
49421449 |
T |
|
| Q |
142 |
tatatata |
149 |
Q |
| |
|
|||||||| |
|
|
| T |
49421448 |
tatatata |
49421441 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 179 - 220
Target Start/End: Complemental strand, 49421418 - 49421377
Alignment:
| Q |
179 |
caaagagatatcatacacatctaaggatatccacctttccac |
220 |
Q |
| |
|
|||||||||||||||||| ||||| |||||||||||||||| |
|
|
| T |
49421418 |
caaagagatatcatacacttctaataatatccacctttccac |
49421377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 84; Significance: 5e-40; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 24 - 158
Target Start/End: Original strand, 4780235 - 4780370
Alignment:
| Q |
24 |
aagagtgatgctaaatggtacgagggcttcaa-cgcacgaagttgcacgacttgttacactacaagcgatttactttattattaaacttattgttagctt |
122 |
Q |
| |
|
||||| |||||||||||||||||| ||||||| |||||||||| ||||||||||||| ||||||||| |||||||||| |||| |||||||| |||||| |
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|
| T |
4780235 |
aagagcgatgctaaatggtacgagagcttcaagcgcacgaagtcgcacgacttgttaaactacaagcaatttactttactattggacttattgctagctt |
4780334 |
T |
|
| Q |
123 |
attggtgcttttgtgttcttatatataacatatagt |
158 |
Q |
| |
|
||||||| | |||||||||||||||||||||||||| |
|
|
| T |
4780335 |
attggtgttattgtgttcttatatataacatatagt |
4780370 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 23 - 158
Target Start/End: Original strand, 35279779 - 35279915
Alignment:
| Q |
23 |
taagagtgatgctaaatggtacgagggcttcaac-gcacgaagttgcacgacttgttacactacaagcgatttactttattattaaacttattgttagct |
121 |
Q |
| |
|
|||||| |||||||||||||||||| ||||||| ||||||||| ||||||||||||| ||| || || |||||||||| |||| |||||||| ||||| |
|
|
| T |
35279779 |
taagagcgatgctaaatggtacgagagcttcaagtgcacgaagtcgcacgacttgttaaactgcaggcaatttactttactattggacttattgctagct |
35279878 |
T |
|
| Q |
122 |
tattggtgcttttgtgttcttatatataacatatagt |
158 |
Q |
| |
|
|||||||| | |||||||||||||||||||||||||| |
|
|
| T |
35279879 |
tattggtgttattgtgttcttatatataacatatagt |
35279915 |
T |
|
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