View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1904_high_1 (Length: 579)
Name: NF1904_high_1
Description: NF1904
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1904_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 401; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 13 - 561
Target Start/End: Complemental strand, 25693645 - 25693087
Alignment:
| Q |
13 |
aatatcttaataatttgaaatatctaatctgatttggacaatttcaaatttcatccaatctaaacaacatgtatatctaaacacctttaaattttcaact |
112 |
Q |
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| T |
25693645 |
aatatcttaataatttgaaatatctaatctgatttaaacaatttcaaatttcattcaatctaaacaacatgtatatctaaacacctttaaattttcaact |
25693546 |
T |
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| Q |
113 |
tctatttaacacgtcatt--------atctttctcttcaaaccacatcatctatctatcacnnnnnnnnc-cttctaaaagtctattggttttaggcgtt |
203 |
Q |
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| T |
25693545 |
tctatttaacacgtcattttatctctatctttctcttcaaaccacatcacctatctatcacttttttttttcttctaaaagtctattggttttaggtgtt |
25693446 |
T |
|
| Q |
204 |
ctataaatcaattttccaatctaagttcatctaaatcccttaagatgttaagtgttaactatatatgtgccacgtcaaatcacaaaatgcccataacaaa |
303 |
Q |
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| T |
25693445 |
ctataaatcaattttccaatctaagttcatctaaatcccttaagatgttaa-------ctatatatgtgccacgtcaaatcacaaaatgcccataacaaa |
25693353 |
T |
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| Q |
304 |
caccaacagacataacaagacaacactgcctgtcacattggcacggattgtacttatttcggcacttgtggttatcgattcctctttacttataataa-- |
401 |
Q |
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| T |
25693352 |
caccaacagacataacaagacaacactgcctgtcacattggcacggattgtacttatttccgcacttgtggttatcgattcctctttacttataataaat |
25693253 |
T |
|
| Q |
402 |
------tgacatttttctttgtttatgtttctttcttcattcgaccnnnnnnntgtttctttcttcatttatttttctttggaaaaattgatgctcgatt |
495 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25693252 |
taataatgacatttttctttgtttatgtttctttcttcattcgaccaaaaaaatgtttctttcttcatttatttttctttggaaaaattgatgctcgatt |
25693153 |
T |
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| Q |
496 |
atttgcatggtctccttatccatccagcaagattggtttagacgtgggagtgttacgcctcagttt |
561 |
Q |
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| T |
25693152 |
atttgcatggtctccttatccatccagcaagattggtttagacgtgggagtgttacgcctcagttt |
25693087 |
T |
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