View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1904_high_10 (Length: 384)

Name: NF1904_high_10
Description: NF1904
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1904_high_10
NF1904_high_10
[»] chr8 (3 HSPs)
chr8 (66-366)||(31033384-31033687)
chr8 (121-179)||(13031592-13031650)
chr8 (15-50)||(31033685-31033720)
[»] chr5 (1 HSPs)
chr5 (15-380)||(41385925-41386290)
[»] scaffold0535 (1 HSPs)
scaffold0535 (23-322)||(8003-8301)
[»] chr4 (8 HSPs)
chr4 (20-322)||(4402318-4402619)
chr4 (143-183)||(14293030-14293070)
chr4 (143-183)||(14309079-14309119)
chr4 (226-334)||(24132139-24132247)
chr4 (113-188)||(9789320-9789395)
chr4 (153-183)||(55237394-55237424)
chr4 (127-180)||(18318007-18318060)
chr4 (127-180)||(18400619-18400672)
[»] chr6 (2 HSPs)
chr6 (15-183)||(27848852-27849019)
chr6 (105-185)||(11644739-11644819)


Alignment Details
Target: chr8 (Bit Score: 188; Significance: 1e-102; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 66 - 366
Target Start/End: Complemental strand, 31033687 - 31033384
Alignment:
Q  66 gtgcaatatttctatggtttgagaaaaaagagagtagggacagagtcgtggcaggctaaccaaaaaagaaacttgagtttttccggcagctttaatttcc 165  Q
    ||||||||||||||||||| ||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||| |||||||||||||    
T  31033687 gtgcaatatttctatggtt-gagcaaaaagagagtagggacagagtcgtggtaggctaaccaaaaaagaaacttgagttttttcggaagctttaatttcc 31033589  T
Q  166 aaatccaagaccaagagaaattaaaattaaaatgagataccgtgtctgtgcggggctgaaaccaagtgta----gccactcttggtagtgtaagtaccat 261  Q
    ||||||||||||||||| ||||| |||||||||||||||  ||||||||| ||||| | || ||||||||    |||||||||| ||||||| |||||||    
T  31033588 aaatccaagaccaagaggaattagaattaaaatgagatattgtgtctgtgtggggcagcaaacaagtgtagccagccactcttgatagtgtaggtaccat 31033489  T
Q  262 ttttgctaggagtccaaatgaaagcatcttctacggaggggttaaacttgatgtgaatgttattgatgaaatcggtaaccaaaggaggtagatgagagtt 361  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| ||  |||||| |||| || |||||||     
T  31033488 ttttgctaggagtccaaatgaaagcatcttctacggaggggttaaacttgatatgaatattattgatgaaattggctaccaaatgagggaggtgagagta 31033389  T
Q  362 caaaa 366  Q
    |||||    
T  31033388 caaaa 31033384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 121 - 179
Target Start/End: Complemental strand, 13031650 - 13031592
Alignment:
Q  121 ctaaccaaaaaagaaacttgagtttttccggcagctttaatttccaaatccaagaccaa 179  Q
    ||||||||||||||||||| |  |||| ||  |||||||||||||||||||||||||||    
T  13031650 ctaaccaaaaaagaaacttaacctttttcgaaagctttaatttccaaatccaagaccaa 13031592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 15 - 50
Target Start/End: Complemental strand, 31033720 - 31033685
Alignment:
Q  15 aatggaggaaagtctcatcatcaagaccgcaacgtg 50  Q
    |||||||||||||||||||||||||||| |||||||    
T  31033720 aatggaggaaagtctcatcatcaagaccacaacgtg 31033685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 125; Significance: 3e-64; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 15 - 380
Target Start/End: Complemental strand, 41386290 - 41385925
Alignment:
Q  15 aatggaggaaagtctcatcatcaagaccgcaacgtgagcaagtagctgaaggtgcaatatttctatggtttgagaaaaaagagagtagggacagagtcgt 114  Q
    |||| ||||||||||| ||||||||||| ||||| || ||| |||| || |||||||||||||||||||| ||| |||| |||||||||| || ||| ||    
T  41386290 aatgtaggaaagtctcgtcatcaagaccacaacgagaacaaatagccgatggtgcaatatttctatggtt-gagtaaaaggagagtagggtcacagttgt 41386192  T
Q  115 ggcaggctaaccaaaaaagaaacttgagtttttccggcagctttaatttccaaatccaagaccaagaga--aattaaaattaaaatgagataccgtgtct 212  Q
    ||||||| |||||||||||||||||| | |||||| | ||||||||||||||||||||||||||| | |  || || |||||||||||| || ||||| |    
T  41386191 ggcaggccaaccaaaaaagaaacttgtgcttttccagaagctttaatttccaaatccaagaccaatataagaaatagaattaaaatgagttatcgtgttt 41386092  T
Q  213 gtgcggggctgaaaccaagtgtagccactcttggtagtgtaagtaccatttttgctaggagtccaaatgaaagcatcttctacggaggggttaaacttga 312  Q
    ||| |||   | |||||| ||||| ||||||| |||||||| |||||||||||  |||||||||||| ||||| ||||| ||| | ||| ||| |||| |    
T  41386091 gtgtgggatagcaaccaaatgtagtcactcttagtagtgtaggtaccattttt-ttaggagtccaaaagaaagaatcttttacagggggattacacttaa 41385993  T
Q  313 tgtgaatgttattgatgaaatcggtaaccaaaggaggtagatgagagttcaaaatctgagtgtaagga 380  Q
    |||  ||||||||||| |||||||  ||||||||||| || ||||||| ||||| || ||||| ||||    
T  41385992 tgttcatgttattgataaaatcggctaccaaaggagggaggtgagagtacaaaacctaagtgtgagga 41385925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0535 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: scaffold0535
Description:

Target: scaffold0535; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 23 - 322
Target Start/End: Complemental strand, 8301 - 8003
Alignment:
Q  23 aaagtctcatcatcaagaccgcaacgtgagcaagtagctgaaggtgcaatatttctatggtttgagaaaaaagagagtagggacagagtcgtggcaggct 122  Q
    ||||||||||| ||| |||| ||||| || |||  ||  || || ||||||||| ||||||| ||| |||| ||||||| ||  ||||| |||||| ||     
T  8301 aaagtctcatcttcaggaccacaacgggaacaaagaggcgatggggcaatatttatatggtt-gagcaaaaggagagtatggtaagagttgtggcaagcc 8203  T
Q  123 aaccaaaaaagaaacttgagtttttccggcagctttaatttccaaatccaagaccaagagaaattaaaattaaaatgagataccgtgtctgtgcggggct 222  Q
    |||||||||||||| ||  | ||||||   || |||||||||||||| |||||||||||| || ||   ||| |||||| |||| |||   |||||| |     
T  8202 aaccaaaaaagaaatttatgcttttccaaaagttttaatttccaaatgcaagaccaagaggaaatagtgttagaatgagttaccatgttgttgcgggaca 8103  T
Q  223 gaaaccaagtgtagccactcttggtagtgtaagtaccatttttgctaggagtccaaatgaaagcatcttctacggaggggttaaacttgatgtgaatgtt 322  Q
      |||||  |||| |||| ||||||||||||   |||||||||| | | | ||||||| ||||||||||||| | | ||||||||||||||||| |||||    
T  8102 acaaccacttgtaaccacacttggtagtgtagacaccatttttgttggaactccaaataaaagcatcttctatgtacgggttaaacttgatgtgcatgtt 8003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 51; Significance: 4e-20; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 20 - 322
Target Start/End: Complemental strand, 4402619 - 4402318
Alignment:
Q  20 aggaaagtctcatcatcaagaccgcaacgtgagcaagtagctgaaggtgcaatatttctatggtttgagaaaaaagagagtagggacagagtcgtggcag 119  Q
    |||||||||||||| |||||| ||||||| |||||   ||  ||||| ||||||||| ||||||| ||| ||||  |||||||||||| ||| ||||||     
T  4402619 aggaaagtctcatcttcaagatcgcaacgggagcatagaggcgaaggagcaatatttatatggtt-gagcaaaagaagagtagggacatagttgtggcaa 4402521  T
Q  120 gctaaccaaaaaagaaacttgagtttttccggcagctttaatttccaaatccaagaccaagagaaattaaaattaaaatgagataccgtgtctgtgcggg 219  Q
    || ||||||||||||||  |  | ||||| || ||   ||||||||||||||| ||||||||| ||  ||  ||| |||||| |||| |||  || || |    
T  4402520 gccaaccaaaaaagaaatctatgcttttcaggaagtagtaatttccaaatccatgaccaagaggaaacaatgttagaatgagttaccatgttagtacgag 4402421  T
Q  220 gctgaaaccaagtgtagccactcttggtagtgtaagtaccatttttgctaggagtccaaatgaaagcatcttctacggaggggttaaacttgatgtgaat 319  Q
     |   |||||  ||||||||| ||||||||||||   |||||||||| | | | |||| || ||| ||||||||| |||||| || ||||||||||| ||    
T  4402420 acaacaaccatttgtagccacacttggtagtgtagacaccatttttgttggaactccatataaaaacatcttctatggagggcttgaacttgatgtgcat 4402321  T
Q  320 gtt 322  Q
    |||    
T  4402320 gtt 4402318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 143 - 183
Target Start/End: Complemental strand, 14293070 - 14293030
Alignment:
Q  143 tttttccggcagctttaatttccaaatccaagaccaagaga 183  Q
    |||||| || |||||||||||||||||||||||||||||||    
T  14293070 tttttctgggagctttaatttccaaatccaagaccaagaga 14293030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 143 - 183
Target Start/End: Complemental strand, 14309119 - 14309079
Alignment:
Q  143 tttttccggcagctttaatttccaaatccaagaccaagaga 183  Q
    |||||| || |||||||||||||||||||||||||||||||    
T  14309119 tttttctgggagctttaatttccaaatccaagaccaagaga 14309079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 226 - 334
Target Start/End: Original strand, 24132139 - 24132247
Alignment:
Q  226 accaagtgtagccactcttggtagtgtaagtaccatttttgctaggagtccaaatgaaagcatcttctacggaggggttaaacttgatgtgaatgttatt 325  Q
    ||||| |||| |||| ||||||||||||   |||||||||| | | | ||||||| ||| ||||||| | |||||| || ||||||||||| ||||||||    
T  24132139 accaattgtaaccacacttggtagtgtagacaccatttttgttggaactccaaataaaaacatcttccatggagggattgaacttgatgtgcatgttatt 24132238  T
Q  326 gatgaaatc 334  Q
     || |||||    
T  24132239 aataaaatc 24132247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 113 - 188
Target Start/End: Complemental strand, 9789395 - 9789320
Alignment:
Q  113 gtggcaggctaaccaaaaaagaaacttgagtttttccggcagctttaatttccaaatccaagaccaagagaaatta 188  Q
    |||||| || ||||||| || ||| |||| |||||||||  | |||| ||||||||||||||||||||||| ||||    
T  9789395 gtggcaagccaaccaaataaaaaatttgattttttccggaggttttagtttccaaatccaagaccaagagatatta 9789320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 153 - 183
Target Start/End: Original strand, 55237394 - 55237424
Alignment:
Q  153 agctttaatttccaaatccaagaccaagaga 183  Q
    |||||||||||||||||||||||||||||||    
T  55237394 agctttaatttccaaatccaagaccaagaga 55237424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 127 - 180
Target Start/End: Original strand, 18318007 - 18318060
Alignment:
Q  127 aaaaaagaaacttgagtttttccggcagctttaatttccaaatccaagaccaag 180  Q
    |||||||||| |||| ||||||||||||||  || ||||||| |||||||||||    
T  18318007 aaaaaagaaatttgattttttccggcagctaaaacttccaaacccaagaccaag 18318060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 127 - 180
Target Start/End: Complemental strand, 18400672 - 18400619
Alignment:
Q  127 aaaaaagaaacttgagtttttccggcagctttaatttccaaatccaagaccaag 180  Q
    |||||||||| |||| ||||||||||||||  || ||||||| |||||||||||    
T  18400672 aaaaaagaaatttgattttttccggcagctaaaacttccaaacccaagaccaag 18400619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 15 - 183
Target Start/End: Original strand, 27848852 - 27849019
Alignment:
Q  15 aatggaggaaagtctcatcatcaagaccgcaacgtgagcaagtagctgaaggtgcaatatttctatggtttgagaaaaaagagagtagggacagagtcgt 114  Q
    |||| |||||||||||||| || | ||| ||||| | ||||  ||| ||||| ||||||||| ||||||| ||| ||||  |||||||||  ||| | ||    
T  27848852 aatgaaggaaagtctcatcttccaaaccacaacgagggcaaacagccgaaggagcaatatttatatggtt-gagtaaaagaagagtaggggaagaattgt 27848950  T
Q  115 ggcaggctaaccaaaaaagaaacttgagtttttccggcagctttaatttccaaatccaagaccaagaga 183  Q
    |||| || || ||||| || ||||| || ||||| || |||||||||||||||||||||||||| ||||    
T  27848951 ggcaagccaagcaaaagaggaacttaagcttttcaggaagctttaatttccaaatccaagaccacgaga 27849019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 105 - 185
Target Start/End: Complemental strand, 11644819 - 11644739
Alignment:
Q  105 acagagtcgtggcaggctaaccaaaaaagaaacttgagtttttccggcagctttaatttccaaatccaagaccaagagaaa 185  Q
    ||||||| ||| || ||||||||||  ||||||||||  |||| |||||||  |||||| |||||||||||||||||||||    
T  11644819 acagagttgtgacaagctaaccaaatgagaaacttgatctttttcggcagcagtaattttcaaatccaagaccaagagaaa 11644739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University