View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1904_high_11 (Length: 371)

Name: NF1904_high_11
Description: NF1904
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1904_high_11
NF1904_high_11
[»] chr2 (10 HSPs)
chr2 (17-340)||(25475106-25475431)
chr2 (21-229)||(31000460-31000668)
chr2 (29-190)||(18531714-18531877)
chr2 (21-229)||(35708869-35709078)
chr2 (92-229)||(41256208-41256348)
chr2 (161-228)||(28455128-28455194)
chr2 (21-95)||(16592715-16592788)
chr2 (27-99)||(32138872-32138941)
chr2 (177-229)||(24318745-24318797)
chr2 (174-229)||(31275304-31275360)
[»] scaffold0103 (1 HSPs)
scaffold0103 (21-227)||(36494-36700)
[»] chr1 (13 HSPs)
chr1 (21-189)||(12484825-12484994)
chr1 (21-187)||(24902650-24902816)
chr1 (120-234)||(50048200-50048315)
chr1 (161-229)||(34522117-34522184)
chr1 (120-231)||(27682883-27682995)
chr1 (36-105)||(12811276-12811342)
chr1 (21-221)||(30782775-30782977)
chr1 (163-227)||(17836791-17836854)
chr1 (122-236)||(30676624-30676738)
chr1 (135-229)||(9329213-9329308)
chr1 (174-219)||(23420485-23420530)
chr1 (161-229)||(9354203-9354270)
chr1 (29-99)||(17836921-17836988)
[»] chr3 (9 HSPs)
chr3 (21-230)||(14541072-14541284)
chr3 (21-183)||(25884236-25884400)
chr3 (278-338)||(50058282-50058342)
chr3 (120-229)||(25918086-25918195)
chr3 (163-226)||(33913400-33913462)
chr3 (287-338)||(28095100-28095151)
chr3 (36-100)||(27416243-27416304)
chr3 (120-229)||(2728447-2728557)
chr3 (120-221)||(10342959-10343061)
[»] chr5 (13 HSPs)
chr5 (53-227)||(37899059-37899236)
chr5 (30-230)||(19570913-19571113)
chr5 (21-229)||(20715692-20715899)
chr5 (21-105)||(22230851-22230934)
chr5 (47-229)||(12338835-12339020)
chr5 (122-229)||(11273684-11273792)
chr5 (21-182)||(107154-107316)
chr5 (144-229)||(17768626-17768712)
chr5 (161-229)||(18451061-18451128)
chr5 (173-230)||(24518958-24519015)
chr5 (123-221)||(25682104-25682203)
chr5 (174-230)||(16617446-16617502)
chr5 (27-105)||(26327925-26328000)
[»] chr8 (11 HSPs)
chr8 (30-230)||(26883349-26883551)
chr8 (33-228)||(13305526-13305721)
chr8 (161-229)||(32240443-32240510)
chr8 (21-96)||(26853476-26853550)
chr8 (161-229)||(26853605-26853672)
chr8 (30-99)||(11307763-11307829)
chr8 (174-220)||(28075675-28075721)
chr8 (189-230)||(1644402-1644443)
chr8 (176-229)||(12957567-12957620)
chr8 (174-219)||(27117426-27117471)
chr8 (21-99)||(32240302-32240377)
[»] chr7 (17 HSPs)
chr7 (21-221)||(20342071-20342273)
chr7 (120-230)||(2629645-2629757)
chr7 (27-229)||(21472887-21473089)
chr7 (29-229)||(7494354-7494555)
chr7 (30-229)||(7816422-7816622)
chr7 (161-229)||(21544680-21544747)
chr7 (134-230)||(18494554-18494651)
chr7 (161-206)||(20469603-20469647)
chr7 (29-97)||(316238-316305)
chr7 (174-221)||(4091354-4091401)
chr7 (123-209)||(9974209-9974295)
chr7 (120-219)||(7152073-7152173)
chr7 (135-220)||(7776360-7776446)
chr7 (126-229)||(14074444-14074547)
chr7 (126-229)||(14384472-14384575)
chr7 (35-95)||(20039866-20039925)
chr7 (35-95)||(20050030-20050089)
[»] chr4 (10 HSPs)
chr4 (21-196)||(9781922-9782102)
chr4 (21-229)||(12840698-12840906)
chr4 (21-220)||(51885739-51885938)
chr4 (28-231)||(22219808-22220011)
chr4 (174-221)||(20717948-20717995)
chr4 (174-226)||(10450301-10450353)
chr4 (161-221)||(12805776-12805835)
chr4 (191-229)||(16207352-16207390)
chr4 (174-219)||(30797709-30797754)
chr4 (21-99)||(47023689-47023764)
[»] chr6 (12 HSPs)
chr6 (28-229)||(15576055-15576253)
chr6 (120-227)||(25940164-25940267)
chr6 (177-229)||(13194289-13194341)
chr6 (177-229)||(22727250-22727302)
chr6 (174-229)||(13782414-13782469)
chr6 (174-229)||(13789736-13789791)
chr6 (174-229)||(13803991-13804046)
chr6 (178-220)||(9942435-9942477)
chr6 (179-229)||(16529377-16529427)
chr6 (174-218)||(8037053-8037097)
chr6 (35-99)||(17859069-17859132)
chr6 (161-229)||(24224486-24224553)
[»] scaffold0855 (1 HSPs)
scaffold0855 (29-221)||(2023-2216)
[»] scaffold0847 (1 HSPs)
scaffold0847 (29-221)||(2188-2381)
[»] scaffold0171 (2 HSPs)
scaffold0171 (161-229)||(7354-7421)
scaffold0171 (177-221)||(22580-22624)
[»] scaffold0362 (2 HSPs)
scaffold0362 (177-227)||(9971-10021)
scaffold0362 (21-105)||(9817-9897)
[»] scaffold0108 (1 HSPs)
scaffold0108 (76-219)||(9807-9953)
[»] scaffold0078 (1 HSPs)
scaffold0078 (234-278)||(13976-14021)


Alignment Details
Target: chr2 (Bit Score: 263; Significance: 1e-146; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 17 - 340
Target Start/End: Original strand, 25475106 - 25475431
Alignment:
Q  17 atagtaatcgccgttaatcatctgaatcacaaaaaccctaattttgcattgggcaaggcaatttaaccctgcaattctattcacttttaatacttttcgc 116  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25475106 atagtaatcgccgttaatcatttgaatcacaaaaaccctaattttgcattgggcaaggcaatttaaccctgcaattctattcacttttaatacttttcgc 25475205  T
Q  117 ttataaaataagtttagctaattattgagtttaacgacaatccct--ggagaacgatacaacttactactttactacttgttacaatttggtgcagttgc 214  Q
    ||||||||||||||| |||||||||||||||| ||||||||||||  ||| |||||||||||||||||||||||| ||||||| | ||||||||| ||||    
T  25475206 ttataaaataagttttgctaattattgagttttacgacaatccctatggaaaacgatacaacttactactttactgcttgttatattttggtgcacttgc 25475305  T
Q  215 caatttcttccatcatgtattctaattttatatatagctcgatcttgatgatttaatttttacaaggatgatcaagacgacaatggtacaaaaagacttt 314  Q
    |||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| |||||||||||||||||||||     
T  25475306 caatttcttccatcgtgtattctaattttatatatagctcgatctggatgatttaatttttacaaggatgaccaagaagacaatggtacaaaaagacttg 25475405  T
Q  315 ctccttgttggtctgaattgattctg 340  Q
    ||||||||||||||||||||||||||    
T  25475406 ctccttgttggtctgaattgattctg 25475431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 21 - 229
Target Start/End: Original strand, 31000460 - 31000668
Alignment:
Q  21 taatcgccgttaatcatctgaatcacaaaaaccctaattttgcattgggcaaggcaatttaaccctgcaattctattcacttttaatacttttcgcttat 120  Q
    ||||||| ||||||||||||||||||||||||| |||| || ||||||||||||||||| |||| ||||||||||||||| || | ||||||   ||| |    
T  31000460 taatcgctgttaatcatctgaatcacaaaaacc-taatcttacattgggcaaggcaattcaaccttgcaattctattcac-ttaattactttcacctttt 31000557  T
Q  121 aaaataagtttagctaa-ttattgagtttaacgacaatccc--tggagaacgatacaacttactactttactacttgttacaatttggtgcagttgccaa 217  Q
     ||||||||||   ||| ||| | |||| ||||||||||||  ||||||| |||| |||||||||||||| |||||||||||||||| |||| |||| ||    
T  31000558 gaaataagttttattaatttactaagttgaacgacaatccctgtggagaatgata-aacttactactttattacttgttacaatttgatgcacttgcaaa 31000656  T
Q  218 tttcttccatca 229  Q
    |||| |||||||    
T  31000657 tttcgtccatca 31000668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 29 - 190
Target Start/End: Complemental strand, 18531877 - 18531714
Alignment:
Q  29 gttaatcatctgaatcacaaaaaccctaattttgcattgggcaaggcaatttaaccctgcaattctattca-cttttaatacttttcgcttataaaataa 127  Q
    ||||||||||||||||||||||||  |||| |||||||| ||| ||||||| |||| | |||||||||||| ||| || ||||| || ||| ||||||||    
T  18531877 gttaatcatctgaatcacaaaaact-taatcttgcattgagcatggcaattcaaccatacaattctattcatcttctattacttctcacttttaaaataa 18531779  T
Q  128 gtttagctaattattgagtttaacgacaatccc--tggagaacgatacaacttactactttacta 190  Q
    |||| ||||||||||||||| ||||||||||||  ||||||| |||||||  |||||||||||||    
T  18531778 gttttgctaattattgagttgaacgacaatccctgtggagaatgatacaatatactactttacta 18531714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 21 - 229
Target Start/End: Original strand, 35708869 - 35709078
Alignment:
Q  21 taatcgccgttaatcatctgaatcacaaaaaccctaattttgcattgggcaaggcaatttaaccctgcaattctattcacttttaat-acttttcgctta 119  Q
    |||| |||||||||||||| ||||||||||||  |||| | |||||| ||| || ||| ||||| ||||||||||| || ||||| | ||||||| |||     
T  35708869 taattgccgttaatcatctaaatcacaaaaaca-taatctagcattgtgcagggaaatgtaaccatgcaattctat-catttttatttacttttctcttt 35708966  T
Q  120 taaaataagtttagctaattattgagtttaacgacaatccctg--gagaacgatacaacttactactttactacttgttacaatttggtgcagttgccaa 217  Q
    | ||||||||||   ||||||||||||| |||||||| |||||  || ||||||||||||| |||||||||| |||| | | |||||||||| ||  |||    
T  35708967 tgaaataagtttttttaattattgagttgaacgacaaaccctgtggaaaacgatacaacttgctactttactgcttgcttcgatttggtgcacttaacaa 35709066  T
Q  218 tttcttccatca 229  Q
    |||| |||||||    
T  35709067 tttcgtccatca 35709078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 92 - 229
Target Start/End: Complemental strand, 41256348 - 41256208
Alignment:
Q  92 tctattcacttttaa-tacttttcgcttataaaataagtttagctaattattgagtttaacgacaatcc--ctggagaacgatacaacttac-tacttta 187  Q
    ||||||||||||||  ||||||| |||| | ||||||||||  ||||||||| |||| |||||||||||   |||||||||||| ||||||| |||||||    
T  41256348 tctattcacttttatgtacttttagcttttgaaataagttttactaattattaagttgaacgacaatccatgtggagaacgata-aacttacttacttta 41256250  T
Q  188 ctacttgttacaatttggtgcagttgccaatttcttccatca 229  Q
     || ||||||| |||||||||| ||| ||||||| |||||||    
T  41256249 ttatttgttacgatttggtgcacttgtcaatttcgtccatca 41256208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 161 - 228
Target Start/End: Complemental strand, 28455194 - 28455128
Alignment:
Q  161 tggagaacgatacaacttactactttactacttgttacaatttggtgcagttgccaatttcttccatc 228  Q
    |||||||| ||| |||||||||||||| |||||||||  |||||||| | ||||||||||| ||||||    
T  28455194 tggagaaccata-aacttactactttaatacttgttatgatttggtgtacttgccaatttcgtccatc 28455128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 21 - 95
Target Start/End: Complemental strand, 16592788 - 16592715
Alignment:
Q  21 taatcgccgttaatcatctgaatcacaaaaaccctaattttgcattgggcaaggcaatttaaccctgcaattcta 95  Q
    |||||| |||||||||||||||||||||||| | |||| |||||||||  | | |||||||||| | ||||||||    
T  16592788 taatcgtcgttaatcatctgaatcacaaaaa-cgtaatcttgcattggatatgacaatttaaccgttcaattcta 16592715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 27 - 99
Target Start/End: Complemental strand, 32138941 - 32138872
Alignment:
Q  27 ccgttaatcatctgaatcacaaaaaccctaattttgcattgggcaaggcaatttaaccctgcaattctattca 99  Q
    |||||||| |||||||||||||| |   |||| ||||||| |||| || |||| |||||||||||||||||||    
T  32138941 ccgttaataatctgaatcacaaaca---taatcttgcatttggcagggaaattcaaccctgcaattctattca 32138872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 177 - 229
Target Start/End: Complemental strand, 24318797 - 24318745
Alignment:
Q  177 ttactactttactacttgttacaatttggtgcagttgccaatttcttccatca 229  Q
    ||||| ||||| || |||||||||||||||||| || |||||||| |||||||    
T  24318797 ttacttctttattaattgttacaatttggtgcactttccaatttcgtccatca 24318745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 174 - 229
Target Start/End: Original strand, 31275304 - 31275360
Alignment:
Q  174 aacttactactttactacttg-ttacaatttggtgcagttgccaatttcttccatca 229  Q
    |||||||||||||| |||||| |||| |||||||||| |||||||||| || |||||    
T  31275304 aacttactactttattacttgtttacgatttggtgcacttgccaatttgtttcatca 31275360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0103 (Bit Score: 84; Significance: 8e-40; HSPs: 1)
Name: scaffold0103
Description:

Target: scaffold0103; HSP #1
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 21 - 227
Target Start/End: Complemental strand, 36700 - 36494
Alignment:
Q  21 taatcgccgttaatcatctgaatcacaaaaaccctaattttgcattgggcaaggcaatttaaccctgcaattctattcacttttaat-acttttcgctta 119  Q
    |||||| |||||||||||||||||| ||||  |||||| ||||||||||||||| |||| ||||||||||||||||||||||||||| |||||   |||     
T  36700 taatcgtcgttaatcatctgaatcaaaaaa--cctaatcttgcattgggcaaggaaattcaaccctgcaattctattcacttttaatgactttcgtcttt 36603  T
Q  120 taaaataagtttagctaattattgagtttaacgacaatcc--ctggagaacgatacaacttactactttactacttgttacaatttggtgcagttgccaa 217  Q
    ||||||||||||   |||||||| |||| |||||||||||   |||||||| ||| |||||||||||||| ||||||||   |||||||||| |||||||    
T  36602 taaaataagttttattaattattaagttgaacgacaatccttgtggagaacaata-aacttactactttattacttgttgtgatttggtgcacttgccaa 36504  T
Q  218 tttcttccat 227  Q
    |||| |||||    
T  36503 tttcgtccat 36494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 80; Significance: 2e-37; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 21 - 189
Target Start/End: Complemental strand, 12484994 - 12484825
Alignment:
Q  21 taatcgccgttaatcatctgaatcacaaaaaccctaattttgcattgggcaaggcaatttaaccctgcaattctattcacttttaatacttttcgcttat 120  Q
    |||| |||||||||||||||||||||||||||| ||||  ||||||| | | |||||||||||| ||||||||||||||||||||||   |||||||| |    
T  12484994 taatagccgttaatcatctgaatcacaaaaacc-taatcgtgcattgtgtagggcaatttaaccttgcaattctattcacttttaattactttcgctttt 12484896  T
Q  121 aaaataagtttagctaattattgagtttaacgacaatccctg--gagaacgatacaacttactactttact 189  Q
     ||||||||||  |||||||||||||| ||||||||||| ||  ||||||||||  |||||||||||||||    
T  12484895 gaaataagttttactaattattgagttgaacgacaatccatgtagagaacgataatacttactactttact 12484825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 21 - 187
Target Start/End: Complemental strand, 24902816 - 24902650
Alignment:
Q  21 taatcgccgttaatcatctgaatcacaaaaaccctaattttgcattgggcaaggcaatttaaccctgcaattctattcacttttaatacttttcgcttat 120  Q
    |||||| ||||||||| |||||||||||||||| |||| |||||||||||| | ||||| |||||||||||| ||||||| |||| |   |||||||| |    
T  24902816 taatcgtcgttaatcacctgaatcacaaaaacc-taatattgcattgggcatgacaattcaaccctgcaattttattcacctttatttactttcgctttt 24902718  T
Q  121 aaaataagtttagctaattattgagtttaacgacaatccct--ggagaacgatacaacttactacttta 187  Q
     ||||||||||   |||||||| |||| ||||||||| |||  ||||||||||| ||||||||||||||    
T  24902717 gaaataagttttattaattattaagttgaacgacaatacctgcggagaacgata-aacttactacttta 24902650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 120 - 234
Target Start/End: Original strand, 50048200 - 50048315
Alignment:
Q  120 taaaataagtttagctaattattgagtttaacgacaatccctg--gagaacgatacaacttactactttactacttgttacaatttggtgcagttgccaa 217  Q
    |||||||||||| |||| || || |||| ||||||| ||||||  |||||||||| |||||||||||||| ||||||||| |||||| |||| |||||||    
T  50048200 taaaataagttttgctagttgttaagttgaacgacagtccctgtggagaacgata-aacttactactttattacttgttataatttgatgcacttgccaa 50048298  T
Q  218 tttcttccatcatgtat 234  Q
    |||| ||||||||||||    
T  50048299 tttcgtccatcatgtat 50048315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 161 - 229
Target Start/End: Original strand, 34522117 - 34522184
Alignment:
Q  161 tggagaacgatacaacttactactttactacttgttacaatttggtgcagttgccaatttcttccatca 229  Q
    |||||||||||| ||||||||| |||| |||||||||| |||||||||| |||||||||||||||||||    
T  34522117 tggagaacgata-aacttactattttattacttgttacgatttggtgcacttgccaatttcttccatca 34522184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 120 - 231
Target Start/End: Original strand, 27682883 - 27682995
Alignment:
Q  120 taaaataagtttagctaattattgagtttaacgacaatccctg--gagaacgatacaacttactactttactacttgttacaatttggtgcagttgccaa 217  Q
    |||||||||||| ||||||   | |||| ||||||||||||||  |||||| ||| |||||||||||||| ||||||||||  ||||||||| ||| |||    
T  27682883 taaaataagttttgctaatagctaagttgaacgacaatccctgtagagaacaata-aacttactactttattacttgttacggtttggtgcacttgtcaa 27682981  T
Q  218 tttcttccatcatg 231  Q
    |||| |||||||||    
T  27682982 tttcgtccatcatg 27682995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 36 - 105
Target Start/End: Original strand, 12811276 - 12811342
Alignment:
Q  36 atctgaatcacaaaaaccctaattttgcattgggcaaggcaatttaaccctgcaattctattcactttta 105  Q
    ||||||||||||||   |||||| ||||||||||||  |||||| ||||||||||||||||||| |||||    
T  12811276 atctgaatcacaaa---cctaatcttgcattgggcagtgcaattcaaccctgcaattctattcaatttta 12811342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 21 - 221
Target Start/End: Original strand, 30782775 - 30782977
Alignment:
Q  21 taatcgccgttaatcatctgaatcacaaaaaccctaattttgcattgggcaaggcaatttaa-ccctgcaattctattca-cttttaat-acttttcgct 117  Q
    |||||| ||||| ||||||||||| ||||| ||  ||| | ||||||||||  |||||| || ||||||||||||| ||| |||||  | |||||||  |    
T  30782775 taatcgtcgttagtcatctgaatctcaaaaccc--aatctcgcattgggcagagcaattaaaaccctgcaattctaatcatcttttctttacttttccgt 30782872  T
Q  118 tataaaataagtttagctaattattgagtttaacgacaatccctgg--agaacgatacaacttactactttactacttgttacaatttggtgcagttgcc 215  Q
    | |||||||||||| | |||||||| |||| |||| ||||| |||   |||||||||||||||||||||||| || || || | |||||||| | || ||    
T  30782873 t-taaaataagttttgttaattattaagttgaacggcaatctctgtgtagaacgatacaacttactactttattatttattgcgatttggtgtacttacc 30782971  T
Q  216 aatttc 221  Q
    ||||||    
T  30782972 aatttc 30782977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 163 - 227
Target Start/End: Complemental strand, 17836854 - 17836791
Alignment:
Q  163 gagaacgatacaacttactactttactacttgttacaatttggtgcagttgccaatttcttccat 227  Q
    |||||||||| |||||||||||||  |||||||||  |||||||||| ||||||||||| |||||    
T  17836854 gagaacgata-aacttactactttcttacttgttatgatttggtgcacttgccaatttcgtccat 17836791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 122 - 236
Target Start/End: Original strand, 30676624 - 30676738
Alignment:
Q  122 aaataagtttagctaattattgagtttaacgacaatccc-tggagaacgatacaacttactactttactacttgttacaatttggtgcagttgccaattt 220  Q
    |||||||||| |||||||  | |||| |||||||||||  || ||||||||| || ||||||||||| |||||||||| |||||||| | ||| ||| ||    
T  30676624 aaataagttttgctaattgctaagttgaacgacaatcctatgcagaacgata-aatttactactttattacttgttacgatttggtgaacttgtcaagtt 30676722  T
Q  221 cttccatcatgtattc 236  Q
    | ||||| || |||||    
T  30676723 cgtccattatctattc 30676738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 135 - 229
Target Start/End: Original strand, 9329213 - 9329308
Alignment:
Q  135 taattattgagtttaacgacaatccctg--gagaacgatacaacttactactttactacttgttacaatttggtgcagttgccaatttcttccatca 229  Q
    ||||| || |||| ||||||||||| ||  |||||||||| ||| |||||||||| ||||||||||||||| ||| | |  |||||||| |||||||    
T  9329213 taattgtttagttgaacgacaatccgtgtggagaacgata-aacgtactactttaatacttgttacaatttagtgtactctccaatttcgtccatca 9329308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 174 - 219
Target Start/End: Complemental strand, 23420530 - 23420485
Alignment:
Q  174 aacttactactttactacttgttacaatttggtgcagttgccaatt 219  Q
    |||||||||||||| |||||||||| ||||||| || |||||||||    
T  23420530 aacttactactttattacttgttacgatttggtacacttgccaatt 23420485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 161 - 229
Target Start/End: Original strand, 9354203 - 9354270
Alignment:
Q  161 tggagaacgatacaacttactactttactacttgttacaatttggtgcagttgccaatttcttccatca 229  Q
    |||||||||||| ||| ||| |||||| ||||||||||||||||||| | |  |||||||| |||||||    
T  9354203 tggagaacgata-aacgtacaactttaatacttgttacaatttggtgtactccccaatttcgtccatca 9354270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 29 - 99
Target Start/End: Complemental strand, 17836988 - 17836921
Alignment:
Q  29 gttaatcatctgaatcacaaaaaccctaattttgcattgggcaaggcaatttaaccctgcaattctattca 99  Q
    |||||| ||||||||||||||   |||||| ||||||||| ||  |||||| |||||||||| ||||||||    
T  17836988 gttaataatctgaatcacaaa---cctaatcttgcattggacagagcaattaaaccctgcaactctattca 17836921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 78; Significance: 3e-36; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 21 - 230
Target Start/End: Complemental strand, 14541284 - 14541072
Alignment:
Q  21 taatcgccgttaatcatctgaatcacaaaaaccctaattttgcattgggcaaggcaatttaaccctgcaattctattca-cttttaatacttttcgctta 119  Q
    ||||| ||||||||||||| ||||||||||| | || | |||||||||||| | ||||||||| ||||||||||||| | ||||   || ||||| |||     
T  14541284 taatcaccgttaatcatctaaatcacaaaaaacttattcttgcattgggcatgacaatttaactctgcaattctattaatctttatttaattttcacttt 14541185  T
Q  120 taaaataagtttagctaattattgagtttaacgacaatccc--tggagaacgatacaacttactactttactacttgttacaatttggtgcagttgccaa 217  Q
    ||||||||||||  |||| ||||||||| |||||||||| |  |||||||||||||||||||||| |||| ||||| |||  |||||||| | |||||||    
T  14541184 taaaataagttttactaactattgagttgaacgacaatctcagtggagaacgatacaacttactattttattacttattattatttggtgtacttgccaa 14541085  T
Q  218 tttcttccatcat 230  Q
    |||| ||||||||    
T  14541084 tttcgtccatcat 14541072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 21 - 183
Target Start/End: Original strand, 25884236 - 25884400
Alignment:
Q  21 taatcgccgttaatcatctgaatcacaaaaaccctaattttgcattgggcaaggcaatttaaccctgcaattctattca-cttttaatacttttcgctta 119  Q
    ||||| || ||||| ||||||||| |||||||| |||| |||||||||| | || |||| |||||||||||| |||||| ||||||  ||||||| ||      
T  25884236 taatcaccattaattatctgaatcgcaaaaacc-taatcttgcattgggtagggaaattcaaccctgcaattttattcatcttttatcacttttcactct 25884334  T
Q  120 taaaataagtttagctaattattgagtttaacgacaatccc--tggagaacgatacaacttactac 183  Q
    |||||||||||| | ||||||||||||| ||||||||||||  | |||||||||||||||||||||    
T  25884335 taaaataagttttgttaattattgagttgaacgacaatccctttagagaacgatacaacttactac 25884400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 278 - 338
Target Start/End: Complemental strand, 50058342 - 50058282
Alignment:
Q  278 aaggatgatcaagacgacaatggtacaaaaagactttctccttgttggtctgaattgattc 338  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  50058342 aaggatgaccaagacgacaatggtacaaaaagactttctccttgttggtcttaattgattc 50058282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 120 - 229
Target Start/End: Complemental strand, 25918195 - 25918086
Alignment:
Q  120 taaaataagtttagctaattattgagtttaacgacaatccctg-gagaacgatacaacttactactttactacttgttacaatttggtgcagttgccaat 218  Q
    |||||||||||| |||||||  | |||| |||||||||||||  ||  |||||| |||||||||| ||| ||||||||||||||||||||| ||| ||||    
T  25918195 taaaataagttttgctaatttctaagttgaacgacaatccctatgaagacgata-aacttactacgttattacttgttacaatttggtgcacttgtcaat 25918097  T
Q  219 ttcttccatca 229  Q
    || ||||||||    
T  25918096 tttttccatca 25918086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 163 - 226
Target Start/End: Complemental strand, 33913462 - 33913400
Alignment:
Q  163 gagaacgatacaacttactactttactacttgttacaatttggtgcagttgccaatttcttcca 226  Q
    |||||||||| || ||||||||||| ||||||||||||||||||||| ||||||||||| ||||    
T  33913462 gagaacgata-aatttactactttattacttgttacaatttggtgcacttgccaatttcgtcca 33913400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 287 - 338
Target Start/End: Original strand, 28095100 - 28095151
Alignment:
Q  287 caagacgacaatggtacaaaaagactttctccttgttggtctgaattgattc 338  Q
    |||||||||||| ||| |||||||||||||||||||||| || |||||||||    
T  28095100 caagacgacaattgtaaaaaaagactttctccttgttggacttaattgattc 28095151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 36 - 100
Target Start/End: Original strand, 27416243 - 27416304
Alignment:
Q  36 atctgaatcacaaaaaccctaattttgcattgggcaaggcaatttaaccctgcaattctattcac 100  Q
    ||||||||||||||   |||||| |||||||||||| |||||   ||||||||||||||||||||    
T  27416243 atctgaatcacaaa---cctaatcttgcattgggcagggcaaagaaaccctgcaattctattcac 27416304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 120 - 229
Target Start/End: Complemental strand, 2728557 - 2728447
Alignment:
Q  120 taaaataagtttagctaattattgagtttaacgacaatccctg--gagaacgatacaacttactactttactacttgttacaatttggtgcagttgccaa 217  Q
    |||||||| |||  ||||||| | |||| ||||||||||| ||  |||||||||| |||||||||||||  |  ||||||| |||||||||| ||||| |    
T  2728557 taaaataattttttctaattactaagttgaacgacaatccttgtggagaacgata-aacttactactttgtttattgttacgatttggtgcatttgccca 2728459  T
Q  218 tttcttccatca 229  Q
    |||  |||||||    
T  2728458 ttttgtccatca 2728447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 120 - 221
Target Start/End: Original strand, 10342959 - 10343061
Alignment:
Q  120 taaaataagtttagctaattattgagtttaacgacaatcc--ctggagaacgatacaacttactactttactacttgttacaatttggtgcagttgccaa 217  Q
    |||||||||||| |||||||  | |||| |||| ||||||   |||||||||||| ||||||||| |||| |||| ||||| |||| ||||| |||| ||    
T  10342959 taaaataagttttgctaattgctaagttgaacggcaatccttgtggagaacgata-aacttactattttattactcgttacgattttgtgcacttgctaa 10343057  T
Q  218 tttc 221  Q
    ||||    
T  10343058 tttc 10343061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 75; Significance: 2e-34; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 53 - 227
Target Start/End: Complemental strand, 37899236 - 37899059
Alignment:
Q  53 cctaattttgcattgggcaaggcaatttaaccctgcaattctattca-cttttaatacttttcgcttataaaataagtttagctaattattgagtttaac 151  Q
    |||||| |||||||| ||| |  |||| ||||||||||||||||| | |||||| |||||||| ||| |||||||||||| | ||||||||||||| |||    
T  37899236 cctaatcttgcattgagcaggataattcaaccctgcaattctatttatcttttattacttttcacttttaaaataagttttgttaattattgagttgaac 37899137  T
Q  152 gacaatccctg--gagaacgatacaacttactactttactacttgttacaatttggtgcagttgccaatttcttccat 227  Q
    |||||||  ||  ||||||||||||||||||| |||||||||||||| | |||||||||| |||||| |||| |||||    
T  37899136 gacaatctttgtagagaacgatacaacttacttctttactacttgttgcgatttggtgcacttgccagtttcgtccat 37899059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 30 - 230
Target Start/End: Original strand, 19570913 - 19571113
Alignment:
Q  30 ttaatcatctgaatcacaaaaaccctaattttgcattgggcaaggcaatttaaccctgcaattctattcacttttaatacttttcgcttataaaataagt 129  Q
    |||||||||||||||||||||||| |||| ||||||| || | | ||||| |||| ||||||||||||||||||| ||   |||||| | | ||||||||    
T  19570913 ttaatcatctgaatcacaaaaacc-taatcttgcattcggaatgacaattcaaccttgcaattctattcactttttattactttcgcctttgaaataagt 19571011  T
Q  130 ttagctaattattgagtttaacgacaatccctg--gagaacgatacaacttactactttactacttgttacaatttggtgcagttgccaatttcttccat 227  Q
    ||   |||||| | |||| || |||||||| ||  |||||||||| |||||||||||||| || ||||||| |||||||||| |||| |||||  |||||    
T  19571012 tttaataattactaagttgaatgacaatccttgtagagaacgata-aacttactactttattatttgttacgatttggtgcacttgcaaatttagtccat 19571110  T
Q  228 cat 230  Q
    |||    
T  19571111 cat 19571113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 21 - 229
Target Start/End: Original strand, 20715692 - 20715899
Alignment:
Q  21 taatcgccgttaatcatctgaatcacaaaaaccctaattttgcattgggcaaggcaatttaaccctgcaattctattcacttttaat-acttttcgctta 119  Q
    ||||| |||||||| || |||||||||||   | |||| |||||||||||| |||| || |||| |||||||||||||||||||| | |  ||||  ||     
T  20715692 taatctccgttaataatttgaatcacaaa---cttaatcttgcattgggcagggcagttcaaccatgcaattctattcacttttatttaaatttcatttt 20715788  T
Q  120 taaaataagtttagctaattattgagtttaacgacaatccctg--gagaacgatacaacttactactttactacttgttacaatttggtgcagttgccaa 217  Q
    ||||| ||||||   |||||| | |||| ||| ||||||||||  |||||||||| |||||||||| ||| ||||| ||||||||||||||| ||| |||    
T  20715789 taaaagaagtttttttaattactaagttgaacaacaatccctgcggagaacgata-aacttactaccttattacttattacaatttggtgcacttgtcaa 20715887  T
Q  218 tttcttccatca 229  Q
    |||| |||||||    
T  20715888 tttcgtccatca 20715899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 21 - 105
Target Start/End: Original strand, 22230851 - 22230934
Alignment:
Q  21 taatcgccgttaatcatctgaatcacaaaaaccctaattttgcattgggcaaggcaatttaaccctgcaattctattcactttta 105  Q
    ||||||||||||||||||| ||||||||||||| |||| ||||||||||||  |||||| |||||||||||||||||||| ||||    
T  22230851 taatcgccgttaatcatcttaatcacaaaaacc-taatcttgcattgggcagagcaattcaaccctgcaattctattcaccttta 22230934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 47 - 229
Target Start/End: Complemental strand, 12339020 - 12338835
Alignment:
Q  47 aaaaaccctaattttgcattgggcaaggcaatttaaccctgcaattctattcact-tttaatacttttcgcttataaaataagtttagctaattattgag 145  Q
    ||||| |||||| ||||| |||||| ||||||||||||||||||||||||||| | |||  |||||||||||  | |||||| |||  ||||||||| ||    
T  12339020 aaaaaacctaatcttgcactgggcagggcaatttaaccctgcaattctattcattattttttacttttcgctcttgaaataaattttactaattattaag 12338921  T
Q  146 tttaacgacaatccc--tggagaacgatacaacttactactttactacttgttacaatttggtgcagttgccaatttcttccatca 229  Q
    || |||| |||||||  |||||||||||| | |||  ||||||||| ||| |  | |||||||||| ||| || |||| |||||||    
T  12338920 ttgaacggcaatccctgtggagaacgatatagcttcttactttactgcttttagcgatttggtgcacttgtcagtttcgtccatca 12338835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 122 - 229
Target Start/End: Complemental strand, 11273792 - 11273684
Alignment:
Q  122 aaataagtttagctaattattgagtttaacgacaatccctg--gagaacgatacaacttactactttactacttgttacaatttggtgcagttgccaatt 219  Q
    |||||||||| |||||||  | |||| ||||||||||| |   |||||||||| |||||||||||||| |||||||||||||||| |||| |||||||||    
T  11273792 aaataagttttgctaattgctaagttgaacgacaatccatatcgagaacgata-aacttactactttattacttgttacaatttgatgcacttgccaatt 11273694  T
Q  220 tcttccatca 229  Q
    |  |||||||    
T  11273693 ttgtccatca 11273684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 21 - 182
Target Start/End: Original strand, 107154 - 107316
Alignment:
Q  21 taatcgccgttaatcatctgaatcacaaaaaccctaattttgcattgggcaaggcaatttaaccctgcaattctattca-cttttaatacttttcgctta 119  Q
    ||||| |||||| ||||||||||| | |||||| |||| | |||||||||||||||||| ||| || ||| |||| ||| |||||| || |||||| ||     
T  107154 taatctccgttagtcatctgaatctcgaaaacc-taatctcgcattgggcaaggcaattaaactctccaactctaatcatcttttattatttttcg-ttt 107251  T
Q  120 taaaataagtttagctaattattgagtttaacgacaatccc--tggagaacgatacaacttacta 182  Q
    |||||||| ||| ||||||| ||||||| | ||| | || |  |||| |||||||||||||||||    
T  107252 taaaataaattttgctaattcttgagttgagcgatagtctctgtggaaaacgatacaacttacta 107316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 144 - 229
Target Start/End: Original strand, 17768626 - 17768712
Alignment:
Q  144 agtttaacgacaatccctg--gagaacgatacaacttactactttactacttgttacaatttggtgcagttgccaatttcttccatca 229  Q
    |||| ||||||||||||||  |||||| ||| |||||||||||||| ||||| |||| |||||||  | ||||||||||| |||||||    
T  17768626 agttgaacgacaatccctgtggagaacaata-aacttactactttattacttcttacgatttggtttacttgccaatttcgtccatca 17768712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 161 - 229
Target Start/End: Complemental strand, 18451128 - 18451061
Alignment:
Q  161 tggagaacgatacaacttactactttactacttgttacaatttggtgcagttgccaatttcttccatca 229  Q
    |||||||||||| ||||||| |||||| |||||||||| || |||| || ||||||||||| |||||||    
T  18451128 tggagaacgata-aacttacaactttattacttgttacgatctggtccacttgccaatttcgtccatca 18451061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 173 - 230
Target Start/End: Original strand, 24518958 - 24519015
Alignment:
Q  173 caacttactactttactacttgttacaatttggtgcagttgccaatttcttccatcat 230  Q
    ||||||||||||||| |||||||||| ||||| | || |||||| |||| ||||||||    
T  24518958 caacttactactttattacttgttacgatttgatacacttgccagtttcgtccatcat 24519015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 123 - 221
Target Start/End: Original strand, 25682104 - 25682203
Alignment:
Q  123 aataagtttagctaattattgagtttaacgacaatccc--tggagaacgatacaacttactactttactacttgttacaatttggtgcagttgccaattt 220  Q
    |||||||||  |||||||  ||||| ||| |||||||   |||||||||||| || |||||| |||| |||||||||| |||| ||||| ||||||||||    
T  25682104 aataagtttttctaattaccgagttgaactacaatccacgtggagaacgataaaa-ttactattttattacttgttacgatttagtgcacttgccaattt 25682202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 174 - 230
Target Start/End: Complemental strand, 16617502 - 16617446
Alignment:
Q  174 aacttactactttactacttgttacaatttggtgcagttgccaatttcttccatcat 230  Q
    |||||||||||||| |||| ||||| |||||||||| ||| || |||| ||||||||    
T  16617502 aacttactactttattactagttacgatttggtgcacttgtcagtttcgtccatcat 16617446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 27 - 105
Target Start/End: Complemental strand, 26328000 - 26327925
Alignment:
Q  27 ccgttaatcatctgaatcacaaaaaccctaattttgcattgggcaaggcaatttaaccctgcaattctattcactttta 105  Q
    |||||||| ||||||||||||||   |||||| ||||||| || | || |||| |||||| |||||||||||| |||||    
T  26328000 ccgttaattatctgaatcacaaa---cctaatcttgcatttggtagggtaattcaaccctacaattctattcaatttta 26327925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 69; Significance: 7e-31; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 30 - 230
Target Start/End: Original strand, 26883349 - 26883551
Alignment:
Q  30 ttaatcatctgaatcacaaaaaccctaattttgcattgggcaaggcaatttaaccctgcaattctattca-cttttaatacttttcgcttataaaataag 128  Q
    |||||||||||||||||||||||  |||| ||||||| |  | || | ||||||| || ||||||||||| | |||| |||||||| ||| ||||||||     
T  26883349 ttaatcatctgaatcacaaaaact-taatcttgcatttgataggggattttaaccttgaaattctattcatcgtttattacttttcacttttaaaataac 26883447  T
Q  129 tttagctaattattgagtttaacgacaatccct--ggagaacgatacaacttactactttactacttgttacaatttggtgcagttgccaatttcttcca 226  Q
    ||| |||||||||||| || ||| |||||||||  ||||||||||| ||||||| ||||||||| ||||||  |||||||||| ||||||||||  ||||    
T  26883448 ttttgctaattattgaattgaacaacaatccctttggagaacgatagaacttacaactttactatttgttatgatttggtgcacttgccaattttgtcca 26883547  T
Q  227 tcat 230  Q
    ||||    
T  26883548 tcat 26883551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 33 - 228
Target Start/End: Original strand, 13305526 - 13305721
Alignment:
Q  33 atcatctgaatcacaaaaaccctaattttgcattgggcaaggcaatttaaccctgcaattctattcactttta-atacttttcgcttataaaataagttt 131  Q
    ||||||||||||||||||  |||||| || |||||| || |||||||||||| ||||||||||||||||||||  ||||||   ||| | ||||||  ||    
T  13305526 atcatctgaatcacaaaa--cctaatcttccattggacatggcaatttaaccatgcaattctattcacttttatttactttcatcttttgaaataaactt 13305623  T
Q  132 agctaattattgagtttaacgacaatccctg--gagaacgatacaacttactactttactacttgttacaatttggtgcagttgccaatttcttccatc 228  Q
       |||||| | |||| ||||||||||| ||  |||||||||| |||| ||||||||| ||||||||||||||| | ||| ||||||||||| ||||||    
T  13305624 tattaattactaagttgaacgacaatccatgtagagaacgata-aactaactactttattacttgttacaattttgcgcacttgccaatttcgtccatc 13305721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 161 - 229
Target Start/End: Original strand, 32240443 - 32240510
Alignment:
Q  161 tggagaacgatacaacttactactttactacttgttacaatttggtgcagttgccaatttcttccatca 229  Q
    |||||||||||| |||||||||||||| ||||||||||||||||||||| ||||||||||  |||||||    
T  32240443 tggagaacgata-aacttactactttattacttgttacaatttggtgcacttgccaattttgtccatca 32240510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 21 - 96
Target Start/End: Original strand, 26853476 - 26853550
Alignment:
Q  21 taatcgccgttaatcatctgaatcacaaaaaccctaattttgcattgggcaaggcaatttaaccctgcaattctat 96  Q
    |||||| |||||||||||||||||||||||| |||||| || |||||| || ||||||| |||||| |||||||||    
T  26853476 taatcgtcgttaatcatctgaatcacaaaaa-cctaatcttacattggacagggcaattcaaccctacaattctat 26853550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 161 - 229
Target Start/End: Original strand, 26853605 - 26853672
Alignment:
Q  161 tggagaacgatacaacttactactttactacttgttacaatttggtgcagttgccaatttcttccatca 229  Q
    |||||||||||  |||||||||||||| |||||||||| |||||||||| || |||||||| |||||||    
T  26853605 tggagaacgatg-aacttactactttattacttgttacgatttggtgcattttccaatttcatccatca 26853672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 30 - 99
Target Start/End: Complemental strand, 11307829 - 11307763
Alignment:
Q  30 ttaatcatctgaatcacaaaaaccctaattttgcattgggcaaggcaatttaaccctgcaattctattca 99  Q
    ||||||||||||||||||||    ||||| ||| |||||||| | ||||| |||||||||||||||||||    
T  11307829 ttaatcatctgaatcacaaat---ctaatcttgtattgggcaggacaattcaaccctgcaattctattca 11307763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 174 - 220
Target Start/End: Original strand, 28075675 - 28075721
Alignment:
Q  174 aacttactactttactacttgttacaatttggtgcagttgccaattt 220  Q
    |||||||||||||| ||||||||||||||||||| | ||| ||||||    
T  28075675 aacttactactttattacttgttacaatttggtgtacttgtcaattt 28075721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 189 - 230
Target Start/End: Original strand, 1644402 - 1644443
Alignment:
Q  189 tacttgttacaatttggtgcagttgccaatttcttccatcat 230  Q
    ||||||||||||||||||| | ||||||||||| ||||||||    
T  1644402 tacttgttacaatttggtgtacttgccaatttcgtccatcat 1644443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 176 - 229
Target Start/End: Original strand, 12957567 - 12957620
Alignment:
Q  176 cttactactttactacttgttacaatttggtgcagttgccaatttcttccatca 229  Q
    |||||||||||| |||||||||| |||| ||||| ||| ||||||| |||||||    
T  12957567 cttactactttattacttgttacgatttagtgcacttgtcaatttcgtccatca 12957620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 174 - 219
Target Start/End: Complemental strand, 27117471 - 27117426
Alignment:
Q  174 aacttactactttactacttgttacaatttggtgcagttgccaatt 219  Q
    |||||||||||||| |||||| ||| |||||||||| |||||||||    
T  27117471 aacttactactttattacttgatacgatttggtgcatttgccaatt 27117426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 21 - 99
Target Start/End: Original strand, 32240302 - 32240377
Alignment:
Q  21 taatcgccgttaatcatctgaatcacaaaaaccctaattttgcattgggcaaggcaatttaaccctgcaattctattca 99  Q
    ||||||| |||||||||||||||||||||   |||||| ||  |||||| |  |||||| |||||||||| ||||||||    
T  32240302 taatcgctgttaatcatctgaatcacaaa---cctaatcttttattggggagagcaattaaaccctgcaaatctattca 32240377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 67; Significance: 1e-29; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 21 - 221
Target Start/End: Original strand, 20342071 - 20342273
Alignment:
Q  21 taatcgccgttaatcatctgaatcacaaaaaccctaattttgcattgggcaaggcaatttaaccctgcaattctattcacttttaatacttttcgcttat 120  Q
    ||||||||||||||||||||||||||||||| | |||| ||||||||||||  |||||| ||||||||||||||||||||||||| |   |||||||| |    
T  20342071 taatcgccgttaatcatctgaatcacaaaaatc-taatcttgcattgggcagagcaattcaaccctgcaattctattcacttttatttactttcgctttt 20342169  T
Q  121 --aaaataagtttagctaattattgagtttaacgacaatcc--ctggagaacgatacaacttactactttactacttgttacaatttggtgcagttgcca 216  Q
      | |||||||||   |||||| | |||| |||||||||||  || ||||| |||| |||||| | ||||| |||||||||| ||| |||||| ||||||    
T  20342170 tgataataagttttattaattactaagttgaacgacaatccctctagagaatgata-aacttattgctttattacttgttacgattcggtgcatttgcca 20342268  T
Q  217 atttc 221  Q
    |||||    
T  20342269 atttc 20342273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 120 - 230
Target Start/End: Complemental strand, 2629757 - 2629645
Alignment:
Q  120 taaaataagtttagctaattattgagtttaacgacaatccctg--gagaacgatacaacttactactttactacttgttacaatttggtgcagttgccaa 217  Q
    |||||||||||| ||||||||||||||| ||| ||||||||||  ||||||||||||||||||||||||||||||| || ||||||| |||| ||| |||    
T  2629757 taaaataagttttgctaattattgagttgaacaacaatccctgtggagaacgatacaacttactactttactacttattgcaatttgttgcacttgtcaa 2629658  T
Q  218 tttcttccatcat 230  Q
    |||| || |||||    
T  2629657 tttcgtcaatcat 2629645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 27 - 229
Target Start/End: Original strand, 21472887 - 21473089
Alignment:
Q  27 ccgttaatcatctgaatcacaaaaaccctaattttgcattgggcaaggcaatttaaccctgcaattctattcacttttaatacttttcgcttataaaata 126  Q
    ||||||||||||||||||||||||||| |||| |||||||||||| ||||||| ||| ||||||||||||||| ||||| |   |||||||| | |||||    
T  21472887 ccgttaatcatctgaatcacaaaaacc-taatcttgcattgggcagggcaattcaactctgcaattctattcatttttatttactttcgcttttgaaata 21472985  T
Q  127 agtttagctaattattgagtttaacgacaatc--cctggagaacgatacaacttactactttactacttgttacaatttggtgcagttgccaatttcttc 224  Q
    |||||   |||||| | |||| ||||||||||    ||||||| || | ||||||||||||||  ||||||||  |||||||||| |||  |||||| ||    
T  21472986 agttttattaattactaagttgaacgacaatctttgtggagaatgaga-aacttactactttataacttgttatgatttggtgcacttgataatttcgtc 21473084  T
Q  225 catca 229  Q
    |||||    
T  21473085 catca 21473089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 29 - 229
Target Start/End: Original strand, 7494354 - 7494555
Alignment:
Q  29 gttaatcatctgaatcacaaaaaccctaattttgcattgggcaaggcaatttaaccctgcaattctattcacttttaatacttttcgc-ttataaaataa 127  Q
    ||||||||||||||||||||||||| || | ||||||||||||  | |||| ||||||| || | ||||||||||||||   |||||| || | ||||||    
T  7494354 gttaatcatctgaatcacaaaaacc-tagtcttgcattgggcagagaaattcaaccctgtaactttattcacttttaattaatttcgccttttgaaataa 7494452  T
Q  128 gtttagctaattattgagtttaacgacaatccctg--gagaacgatacaacttactactttactacttgttacaatttggtgcagttgccaatttcttcc 225  Q
    ||||   | |||| | |||| ||||  ||||||||  ||||| |||| ||||||||| |||| |||||||||| |||||||||| ||||||||||| |||    
T  7494453 gttttaatgattactaagttgaacggtaatccctgtggagaatgata-aacttactaatttattacttgttacgatttggtgcacttgccaatttcgtcc 7494551  T
Q  226 atca 229  Q
    ||||    
T  7494552 atca 7494555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 30 - 229
Target Start/End: Original strand, 7816422 - 7816622
Alignment:
Q  30 ttaatcatctgaatcacaaaaaccctaattttgcattgggcaaggcaatttaaccctgcaattctattcacttttaatacttttcgc-ttataaaataag 128  Q
    ||||||||||  |||||||||||| |||||||||||||||||  | |||| |||||| ||||||||||||||||| ||   |||||| || | |||||||    
T  7816422 ttaatcatcttcatcacaaaaacc-taattttgcattgggcagagtaattcaacccttcaattctattcactttttattactttcgctttttgaaataag 7816520  T
Q  129 tttagctaattattgagtttaacgacaatccctggagaacgata-caacttactactttactacttgttacaatttggtgcagttgccaatttcttccat 227  Q
    |||   |||||| | |||| ||| ||||||| ||  |||  |||  ||| || ||||||| ||||||||||||| || |||| ||| ||||||| |||||    
T  7816521 ttttattaattactaagttgaacaacaatccttgtggaaaaatataaacatattactttagtacttgttacaatatgatgcacttgtcaatttcgtccat 7816620  T
Q  228 ca 229  Q
    ||    
T  7816621 ca 7816622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 161 - 229
Target Start/End: Complemental strand, 21544747 - 21544680
Alignment:
Q  161 tggagaacgatacaacttactactttactacttgttacaatttggtgcagttgccaatttcttccatca 229  Q
    ||||||||| || |||||||||||||| |||||||||| |||||||||| ||||||||||| |||||||    
T  21544747 tggagaacggta-aacttactactttattacttgttacgatttggtgcacttgccaatttcgtccatca 21544680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 134 - 230
Target Start/End: Complemental strand, 18494651 - 18494554
Alignment:
Q  134 ctaattattgagtttaacgacaatccctg--gagaacgatacaacttactactttactacttgttacaatttggtgcagttgccaatttcttccatcat 230  Q
    |||||||  ||||| ||||||||||||||  |||||| ||| |||||||||| ||| |||||||||| |||||||||| ||||||||||| || |||||    
T  18494651 ctaattaccgagttgaacgacaatccctgtggagaacaata-aacttactaccttattacttgttacgatttggtgcacttgccaatttcgtctatcat 18494554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 161 - 206
Target Start/End: Complemental strand, 20469647 - 20469603
Alignment:
Q  161 tggagaacgatacaacttactactttactacttgttacaatttggt 206  Q
    |||||||||||| |||||||||||||| ||||||||||||||||||    
T  20469647 tggagaacgata-aacttactactttattacttgttacaatttggt 20469603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 29 - 97
Target Start/End: Original strand, 316238 - 316305
Alignment:
Q  29 gttaatcatctgaatcacaaaaaccctaattttgcattgggcaaggcaatttaaccctgcaattctatt 97  Q
    ||||||||||| ||||||||||||| |||| |||||||||| | || |||| |||| ||||||||||||    
T  316238 gttaatcatcttaatcacaaaaacc-taatcttgcattgggtaggggaattcaaccatgcaattctatt 316305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 174 - 221
Target Start/End: Complemental strand, 4091401 - 4091354
Alignment:
Q  174 aacttactactttactacttgttacaatttggtgcagttgccaatttc 221  Q
    |||||||||||||| |||||||||| ||||||| || |||||||||||    
T  4091401 aacttactactttattacttgttacgatttggtacacttgccaatttc 4091354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 123 - 209
Target Start/End: Original strand, 9974209 - 9974295
Alignment:
Q  123 aataagtttagctaattattgagtttaacgacaatccctggagaa-cgatacaacttactactttactacttgttacaatttggtgca 209  Q
    ||||||||| |||| |||  ||||| ||||||||| |||| |||| ||||| |||||||||||||| ||| |||||| ||||||||||    
T  9974209 aataagttttgctagttacagagttgaacgacaattcctgtagaaacgata-aacttactactttattacatgttaccatttggtgca 9974295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 120 - 219
Target Start/End: Original strand, 7152073 - 7152173
Alignment:
Q  120 taaaataagtttagctaattattgagtttaacgacaatccct--ggagaacgatacaacttactactttactacttgttacaatttggtgcagttgccaa 217  Q
    ||||||||||||   |||||| | |||| || ||||||||||  | | ||||||| |||||||||||||| |||||||||| |||||||||| ||| |||    
T  7152073 taaaataagttttattaattactaagttgaatgacaatccctctgaaaaacgata-aacttactactttattacttgttacgatttggtgcacttgtcaa 7152171  T
Q  218 tt 219  Q
    ||    
T  7152172 tt 7152173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 135 - 220
Target Start/End: Complemental strand, 7776446 - 7776360
Alignment:
Q  135 taattattgagtttaacgacaatccctg--gagaacgatacaacttactactttactacttgttacaatttggtgcagttgccaattt 220  Q
    |||||| | |||| ||||||| ||||||  |||||||||| |||||||||||||  |||||||||  |||||||||| |||| |||||    
T  7776446 taattactaagttgaacgacagtccctgtggagaacgata-aacttactactttgttacttgttaagatttggtgcacttgctaattt 7776360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 126 - 229
Target Start/End: Original strand, 14074444 - 14074547
Alignment:
Q  126 aagtttagctaattattgagtttaacgacaatccctg-gagaacgatacaacttactactttactacttgttacaatttggtgcagttgccaatttcttc 224  Q
    |||||| ||||||||  ||||| || |||||||| || ||  |||||| |||||||||||||| |||||||||| |||| ||||| || ||| |||| ||    
T  14074444 aagttttgctaattaccgagttgaatgacaatccatgtgaagacgata-aacttactactttattacttgttacgattttgtgcactttccagtttcgtc 14074542  T
Q  225 catca 229  Q
    |||||    
T  14074543 catca 14074547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 126 - 229
Target Start/End: Original strand, 14384472 - 14384575
Alignment:
Q  126 aagtttagctaattattgagtttaacgacaatccctg-gagaacgatacaacttactactttactacttgttacaatttggtgcagttgccaatttcttc 224  Q
    |||||| ||||||||  ||||| || |||||||| || ||  |||||| |||||||||||||| |||||||||| |||| ||||| || ||| |||| ||    
T  14384472 aagttttgctaattaccgagttgaatgacaatccatgtgaagacgata-aacttactactttattacttgttacgattttgtgcactttccagtttcgtc 14384570  T
Q  225 catca 229  Q
    |||||    
T  14384571 catca 14384575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 35 - 95
Target Start/End: Complemental strand, 20039925 - 20039866
Alignment:
Q  35 catctgaatcacaaaaaccctaattttgcattgggcaaggcaatttaaccctgcaattcta 95  Q
    ||||||||||||| ||||| |||| ||||||||||   ||||||| |||||||||||||||    
T  20039925 catctgaatcacacaaacc-taatcttgcattgggtcgggcaattaaaccctgcaattcta 20039866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 35 - 95
Target Start/End: Complemental strand, 20050089 - 20050030
Alignment:
Q  35 catctgaatcacaaaaaccctaattttgcattgggcaaggcaatttaaccctgcaattcta 95  Q
    ||||||||||||| ||||| |||| ||||||||||   ||||||| |||||||||||||||    
T  20050089 catctgaatcacacaaacc-taatcttgcattgggtcgggcaattaaaccctgcaattcta 20050030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 65; Significance: 2e-28; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 21 - 196
Target Start/End: Complemental strand, 9782102 - 9781922
Alignment:
Q  21 taatcgccgttaatcatctgaatcacaaaaaccctaattttgcattgggcaaggcaatttaaccctgcaa---ttctattcactttta-atacttttcgc 116  Q
    ||||| || ||||| ||||||||||| |||||| |||||||||||||||||   ||||||||||||||||   |||||||||||||||  |||||||| |    
T  9782102 taatcaccattaataatctgaatcaccaaaacc-taattttgcattgggcacatcaatttaaccctgcaatatttctattcacttttatttacttttcac 9782004  T
Q  117 ttataaaataagtttagctaattattgagtttaacgacaatccc--tggagaacgatacaacttactactttactacttgtt 196  Q
    || | ||||||||||  |||||||||||||| ||| |||||| |  ||||||||||||  ||||||||||||| ||||||||    
T  9782003 ttttgaaataagttttactaattattgagttgaacaacaatctctatggagaacgatatcacttactactttattacttgtt 9781922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 21 - 229
Target Start/End: Complemental strand, 12840906 - 12840698
Alignment:
Q  21 taatcgccgttaatcatctgaatcacaaaaaccctaattttgcattgggcaaggcaatttaaccctgcaattctattcactttta--atacttttcgctt 118  Q
    ||||| |||||||||||||||||||||||   | |||| |||||||||||  ||||||| |||||  ||||||||||||||||||  | |||||   |||    
T  12840906 taatcaccgttaatcatctgaatcacaaa---cttaatcttgcattgggccgggcaattcaacccaacaattctattcacttttattaaactttcgtctt 12840810  T
Q  119 ataaaataagtttagctaattattgagtttaacgacaatcc--ctggagaacgatacaacttactactttactacttgttacaatttggtgcagttgcca 216  Q
     | ||||||||||   |||||| | |||| ||| | ||| |   ||| |||||||| |||||||||||||| |||||||||| |||  ||||| ||||||    
T  12840809 ttgaaataagttttattaattactaagttgaactagaatgcatgtggcgaacgata-aacttactactttaatacttgttacgattcagtgcacttgcca 12840711  T
Q  217 atttcttccatca 229  Q
    ||||| |||||||    
T  12840710 atttcgtccatca 12840698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 21 - 220
Target Start/End: Original strand, 51885739 - 51885938
Alignment:
Q  21 taatcgccgttaatcatctgaatcacaaaaaccctaattttgcattgggcaaggcaatttaaccctgcaattctattcacttttaat-acttttcgctta 119  Q
    |||||| |||||||||||| |||||||||   |||||| ||||||||| ||   ||||| ||||| |   ||||||||||||||| | |||||   |||     
T  51885739 taatcgtcgttaatcatctaaatcacaaat--cctaatcttgcattggacataacaattaaacccggtgtttctattcacttttatttactttcatcttt 51885836  T
Q  120 taaaataagtttagctaattattgagtttaacgacaatccctg--gagaacgatacaacttactactttactacttgttacaatttggtgcagttgccaa 217  Q
    | ||||||||||   |||||||| |||| ||||||||||||||  |||||| ||| |||||||||||||| |||||| ||| ||| |||||| |||||||    
T  51885837 tgaaataagttttattaattattaagttgaacgacaatccctgtggagaacaata-aacttactactttattacttgatacgattcggtgcacttgccaa 51885935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 28 - 231
Target Start/End: Original strand, 22219808 - 22220011
Alignment:
Q  28 cgttaatcatctgaatcacaaaaaccctaattttgcattgggcaaggcaatttaaccctgcaattctattcacttttaa--tactttt-cgcttataaaa 124  Q
    ||||||| || |||||||||||   || ||| ||||||| |||| ||||||| ||| ||||||||||||||| |||||   ||||||  | ||| | |||    
T  22219808 cgttaataatttgaatcacaaa---ccaaatcttgcatttggcagggcaattcaactctgcaattctattcaattttatcttactttcactctt-tgaaa 22219903  T
Q  125 taagtttagctaattattgagtttaacgacaatccctg--gagaacgatacaacttactactttactacttgttacaatttggtgcagttgccaatttct 222  Q
    |||||||   |||||| | |||| ||||||||||  ||  |||||||||| |||||||||||||| |||||||||  |||| ||||| ||| |||||||     
T  22219904 taagttttattaattactaagttgaacgacaatctttgcggagaacgata-aacttactactttattacttgttatgatttagtgcacttgtcaatttcg 22220002  T
Q  223 tccatcatg 231  Q
    |||||||||    
T  22220003 tccatcatg 22220011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 174 - 221
Target Start/End: Original strand, 20717948 - 20717995
Alignment:
Q  174 aacttactactttactacttgttacaatttggtgcagttgccaatttc 221  Q
    |||||||||||||| |||||||||| |||||||||| |||||||||||    
T  20717948 aacttactactttattacttgttacgatttggtgcacttgccaatttc 20717995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 174 - 226
Target Start/End: Complemental strand, 10450353 - 10450301
Alignment:
Q  174 aacttactactttactacttgttacaatttggtgcagttgccaatttcttcca 226  Q
    |||||||||||||| || ||||||| |||||||||| ||||||||||| ||||    
T  10450353 aacttactactttattatttgttacgatttggtgcacttgccaatttcatcca 10450301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 161 - 221
Target Start/End: Complemental strand, 12805835 - 12805776
Alignment:
Q  161 tggagaacgatacaacttactactttactacttgttacaatttggtgcagttgccaatttc 221  Q
    ||||||| |||| |||||||||||||| |||||||||| |||||||||| || ||||||||    
T  12805835 tggagaatgata-aacttactactttattacttgttacgatttggtgcatttaccaatttc 12805776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 191 - 229
Target Start/End: Original strand, 16207352 - 16207390
Alignment:
Q  191 cttgttacaatttggtgcagttgccaatttcttccatca 229  Q
    |||||||| |||||||||| |||||||||||||||||||    
T  16207352 cttgttacgatttggtgcacttgccaatttcttccatca 16207390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 174 - 219
Target Start/End: Original strand, 30797709 - 30797754
Alignment:
Q  174 aacttactactttactacttgttacaatttggtgcagttgccaatt 219  Q
    |||||||||||||| |||||||||| ||||| |||| |||||||||    
T  30797709 aacttactactttattacttgttacgatttgatgcacttgccaatt 30797754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 21 - 99
Target Start/End: Complemental strand, 47023764 - 47023689
Alignment:
Q  21 taatcgccgttaatcatctgaatcacaaaaaccctaattttgcattgggcaaggcaatttaaccctgcaattctattca 99  Q
    ||||| || ||||| |||||||||||||| |   |||| |||||||||||| |  |||| |||||||||||||||||||    
T  47023764 taatcaccattaattatctgaatcacaaaca---taatcttgcattgggcaggaaaattcaaccctgcaattctattca 47023689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 51; Significance: 4e-20; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 28 - 229
Target Start/End: Original strand, 15576055 - 15576253
Alignment:
Q  28 cgttaatcatctgaatcacaaaaaccctaattttgcattgggcaaggcaatttaaccctgcaattctattcacttttaatacttttcgcttataaaataa 127  Q
    ||||| |||||| |||||||||||   |||| |||||||||||| || |||| |   ||||||||||||||||||||| |   |||||||| | | ||||    
T  15576055 cgttactcatcttaatcacaaaaata-taatcttgcattgggcagggaaattca---ctgcaattctattcacttttatttactttcgcttttgatataa 15576150  T
Q  128 gtttagctaattattgagtttaacgacaatccctg--gagaacgatacaacttactactttactacttgttacaatttggtgcagttgccaatttcttcc 225  Q
    ||||   || ||| | |||| ||||||||||||||  |||||||||| |||| ||||||||| |||||||||| ||||| |||| ||||||||||| |||    
T  15576151 gttttattagttactaagttgaacgacaatccctgcggagaacgata-aactgactactttattacttgttacgatttgatgcacttgccaatttcgtcc 15576249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 120 - 227
Target Start/End: Original strand, 25940164 - 25940267
Alignment:
Q  120 taaaataagtttagctaattattgagtttaacgacaatccctg-gagaacgatacaacttactactttactacttgttacaatttggtgcagttgccaat 218  Q
    ||||||||||||  || ||||||||||| ||||||||||| || ||||||||||||||||||||||||||     |||||||||| ||||| ||||||||    
T  25940164 taaaataagtttttcttattattgagttgaacgacaatccatgtgagaacgatacaacttactactttac-----gttacaatttagtgcacttgccaat 25940258  T
Q  219 ttcttccat 227  Q
    ||| |||||    
T  25940259 ttcgtccat 25940267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 177 - 229
Target Start/End: Original strand, 13194289 - 13194341
Alignment:
Q  177 ttactactttactacttgttacaatttggtgcagttgccaatttcttccatca 229  Q
    ||||||||||| |||||||||| |||||||||| ||||||||||| |||||||    
T  13194289 ttactactttattacttgttacgatttggtgcacttgccaatttcgtccatca 13194341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 177 - 229
Target Start/End: Original strand, 22727250 - 22727302
Alignment:
Q  177 ttactactttactacttgttacaatttggtgcagttgccaatttcttccatca 229  Q
    ||||||||||| ||||||||||||||||||||| ||| ||||||  |||||||    
T  22727250 ttactactttattacttgttacaatttggtgcacttgtcaattttgtccatca 22727302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 174 - 229
Target Start/End: Original strand, 13782414 - 13782469
Alignment:
Q  174 aacttactactttactacttgttacaatttggtgcagttgccaatttcttccatca 229  Q
    |||||||||||||| || ||||||| |||||||||| ||| ||||||| |||||||    
T  13782414 aacttactactttattaattgttacgatttggtgcacttgtcaatttcgtccatca 13782469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 174 - 229
Target Start/End: Original strand, 13789736 - 13789791
Alignment:
Q  174 aacttactactttactacttgttacaatttggtgcagttgccaatttcttccatca 229  Q
    |||||||||||||| || ||||||| |||||||||| ||| ||||||| |||||||    
T  13789736 aacttactactttattaattgttacgatttggtgcacttgtcaatttcgtccatca 13789791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 174 - 229
Target Start/End: Original strand, 13803991 - 13804046
Alignment:
Q  174 aacttactactttactacttgttacaatttggtgcagttgccaatttcttccatca 229  Q
    |||||||||||||| || ||||||| |||||||||| ||| ||||||| |||||||    
T  13803991 aacttactactttattaattgttacgatttggtgcacttgtcaatttcgtccatca 13804046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 178 - 220
Target Start/End: Complemental strand, 9942477 - 9942435
Alignment:
Q  178 tactactttactacttgttacaatttggtgcagttgccaattt 220  Q
    |||||||||| ||||||||| ||||||||||| ||||||||||    
T  9942477 tactactttattacttgttataatttggtgcacttgccaattt 9942435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 179 - 229
Target Start/End: Original strand, 16529377 - 16529427
Alignment:
Q  179 actactttactacttgttacaatttggtgcagttgccaatttcttccatca 229  Q
    ||||||||| ||||||||| |||||||||||  |||||||||| |||||||    
T  16529377 actactttattacttgttataatttggtgcacctgccaatttcgtccatca 16529427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 174 - 218
Target Start/End: Original strand, 8037053 - 8037097
Alignment:
Q  174 aacttactactttactacttgttacaatttggtgcagttgccaat 218  Q
    |||||||||||||| |||||||||| |||| ||||| ||||||||    
T  8037053 aacttactactttattacttgttacgatttagtgcacttgccaat 8037097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 35 - 99
Target Start/End: Complemental strand, 17859132 - 17859069
Alignment:
Q  35 catctgaatcacaaaaaccctaattttgcattgggcaaggcaatttaaccctgcaattctattca 99  Q
    ||||||||||||| ||||| |||| ||||||||||||  |||||| |||||| |||||| |||||    
T  17859132 catctgaatcacacaaacc-taatcttgcattgggcagagcaattaaacccttcaattcaattca 17859069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 161 - 229
Target Start/End: Complemental strand, 24224553 - 24224486
Alignment:
Q  161 tggagaacgatacaacttactactttactacttgttacaatttggtgcagttgccaatttcttccatca 229  Q
    |||||||| ||| |||||||||||||  || ||||||| |||||   ||||||||||||||||||||||    
T  24224553 tggagaacaata-aacttactacttttttaattgttacgatttgacacagttgccaatttcttccatca 24224486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0855 (Bit Score: 49; Significance: 6e-19; HSPs: 1)
Name: scaffold0855
Description:

Target: scaffold0855; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 29 - 221
Target Start/End: Complemental strand, 2216 - 2023
Alignment:
Q  29 gttaatcatctgaatcacaaaaaccctaattttgcattgggcaaggcaatttaaccctgcaattctattcacttttaatacttttcgc-ttataaaataa 127  Q
    ||||||||||||||||||||||||| |||| ||| |||||||| || |||| |||||| ||  | ||||||||||| ||   |||||| || ||||||||    
T  2216 gttaatcatctgaatcacaaaaacc-taatcttgtattgggcagggaaattcaaccctccatgtatattcactttttattactttcgccttttaaaataa 2118  T
Q  128 gtttagctaattattgagtttaacgacaatccc--tggagaacgatacaacttactactttactacttgttacaatttggtgcagttgccaatttc 221  Q
    ||||    ||||| | |||| |||||||||  |  |||||||||||| || ||||||||||| || ||||||| |||||||||| |||||||||||    
T  2117 gttttatgaattactaagttgaacgacaatttcaatggagaacgata-aatttactactttaatatttgttacgatttggtgcacttgccaatttc 2023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0847 (Bit Score: 49; Significance: 6e-19; HSPs: 1)
Name: scaffold0847
Description:

Target: scaffold0847; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 29 - 221
Target Start/End: Complemental strand, 2381 - 2188
Alignment:
Q  29 gttaatcatctgaatcacaaaaaccctaattttgcattgggcaaggcaatttaaccctgcaattctattcacttttaatacttttcgc-ttataaaataa 127  Q
    ||||||||||||||||||||||||| |||| ||| |||||||| || |||| |||||| ||  | ||||||||||| ||   |||||| || ||||||||    
T  2381 gttaatcatctgaatcacaaaaacc-taatcttgtattgggcagggaaattcaaccctccatgtatattcactttttattactttcgccttttaaaataa 2283  T
Q  128 gtttagctaattattgagtttaacgacaatccc--tggagaacgatacaacttactactttactacttgttacaatttggtgcagttgccaatttc 221  Q
    ||||    ||||| | |||| |||||||||  |  |||||||||||| || ||||||||||| || ||||||| |||||||||| |||||||||||    
T  2282 gttttatgaattactaagttgaacgacaatttcaatggagaacgata-aatttactactttaatatttgttacgatttggtgcacttgccaatttc 2188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0171 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: scaffold0171
Description:

Target: scaffold0171; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 161 - 229
Target Start/End: Original strand, 7354 - 7421
Alignment:
Q  161 tggagaacgatacaacttactactttactacttgttacaatttggtgcagttgccaatttcttccatca 229  Q
    |||||||||||| |||||||||||||| |||||||||| |||||||||| ||| ||||||| |||||||    
T  7354 tggagaacgata-aacttactactttattacttgttacgatttggtgcacttgtcaatttcgtccatca 7421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0171; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 177 - 221
Target Start/End: Original strand, 22580 - 22624
Alignment:
Q  177 ttactactttactacttgttacaatttggtgcagttgccaatttc 221  Q
    ||||||||||| ||||||||||||| || |||| |||||||||||    
T  22580 ttactactttattacttgttacaatatgatgcacttgccaatttc 22624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0362 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: scaffold0362
Description:

Target: scaffold0362; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 177 - 227
Target Start/End: Original strand, 9971 - 10021
Alignment:
Q  177 ttactactttactacttgttacaatttggtgcagttgccaatttcttccat 227  Q
    ||||||||||| |||||||||| |||||||||| ||||||||||| |||||    
T  9971 ttactactttattacttgttacgatttggtgcatttgccaatttcatccat 10021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0362; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 21 - 105
Target Start/End: Original strand, 9817 - 9897
Alignment:
Q  21 taatcgccgttaatcatctgaatcacaaaaaccctaattttgcattgggcaaggcaatttaaccctgcaattctattcactttta 105  Q
    ||||| ||||||| ||||||||||| |||   |||||| |||||||| ||| |  |||| |||||||||||||||||||||||||    
T  9817 taatcaccgttaaccatctgaatcataaa---cctaatcttgcattgagca-gataattcaaccctgcaattctattcactttta 9897  T

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Target: scaffold0108 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0108
Description:

Target: scaffold0108; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 76 - 219
Target Start/End: Original strand, 9807 - 9953
Alignment:
Q  76 aatttaaccctgcaattctattcacttttaat--acttttcgcttataaaataagtttagctaattattgagtttaacgacaatccct--ggagaacgat 171  Q
    |||| |||| ||||||||||||||  ||||||  ||||||    ||||||||||||||   |||||| |  ||| || ||||||||||  |||||| |||    
T  9807 aattcaaccatgcaattctattcaaatttaatttacttttacggtataaaataagttttattaattactaggttgaaagacaatccctatggagaatgat 9906  T
Q  172 acaacttactactttactacttgttacaatttggtgcagttgccaatt 219  Q
     | ||||||||||||| |||||||||||||||| |||| |||| ||||    
T  9907 -cgacttactactttattacttgttacaatttgatgcacttgcgaatt 9953  T

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Target: scaffold0078 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0078
Description:

Target: scaffold0078; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 234 - 278
Target Start/End: Original strand, 13976 - 14021
Alignment:
Q  234 ttctaattttatata-tagctcgatcttgatgatttaatttttaca 278  Q
    ||||||||| ||||| || |||||||||||||||||||||||||||    
T  13976 ttctaatttcatataataactcgatcttgatgatttaatttttaca 14021  T

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