View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1904_high_20 (Length: 269)
Name: NF1904_high_20
Description: NF1904
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1904_high_20 |
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Alignment Details
Target: chr8 (Bit Score: 238; Significance: 1e-132; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 5 - 253
Target Start/End: Original strand, 15873885 - 15874134
Alignment:
| Q |
5 |
aatgttggaaaccatattgggtggcaagtacactgaacgagcaaaatcaagtagatgaaagggcttaggattttccaatttgactattaccattccaagt |
104 |
Q |
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| T |
15873885 |
aatgttggaaaccatattgggtggcaagtacactgaacgagcaaaatcaagtatatgaaagggcttaggattttccaatttgactattaccattccaagt |
15873984 |
T |
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| Q |
105 |
cgtttggattcacccatatcaaaagaattgttaattaaaaattccaaatcaatacccatttcttcgcatagaatctcaagcattattctt-ggaagttga |
203 |
Q |
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| T |
15873985 |
cgtttggattcacccatatcaaaagaattgttaattaaaaattccaaatcaatacccatttcttcgcatagaatctcaagcattattcttgggaagttga |
15874084 |
T |
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| Q |
204 |
ttctccaacaataaagtatctctccatatgtgcatcagttggtcaaactt |
253 |
Q |
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| T |
15874085 |
ttctccaacaataaagtatctctccatatgtgcatcagttggtcaaactt |
15874134 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 154; E-Value: 9e-82
Query Start/End: Original strand, 32 - 253
Target Start/End: Complemental strand, 15900156 - 15899935
Alignment:
| Q |
32 |
gtacactgaacgagcaaaatcaagtagatgaaagggcttaggattttccaatttgactattaccattccaagtcgtttggattcacccatatcaaaagaa |
131 |
Q |
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| T |
15900156 |
gtacactgaacgaccaaaatcaagtaaatgaaagggcttatgattttccaattggagcattgccattccaagtcgtttgcatgcacccattgcaaaagaa |
15900057 |
T |
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| Q |
132 |
ttgttaattaaaaattccaaatcaatacccatttcttcgcatagaatctcaagcattattcttggaagttgattctccaacaataaagtatctctccata |
231 |
Q |
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| T |
15900056 |
ttgttaattaaaaaatccaaatcaacactcgtttcttcgcatagaatctcaagcattatttttggaagttgattctccaacaaaaaagtatctctccata |
15899957 |
T |
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| Q |
232 |
tgtgcatcagttggtcaaactt |
253 |
Q |
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| T |
15899956 |
tgtgcatcagttggtcaaactt |
15899935 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 8 - 253
Target Start/End: Complemental strand, 15921208 - 15920963
Alignment:
| Q |
8 |
gttggaaaccatattgggtggcaagtacactgaacgagcaaaatcaagtagatgaaagggcttaggattttccaatttgactattaccattccaagtcgt |
107 |
Q |
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| T |
15921208 |
gttggaaacctttttgggtgacaagtacaatgaacgagcaaaatcgagtagatgacagggcttagtattttccaattgaaccattaccattccgcatcgt |
15921109 |
T |
|
| Q |
108 |
ttggattcacccatatcaaaagaattgttaattaaaaattccaaatcaatacccatttcttcgcatagaatctcaagcattattcttggaagttgattct |
207 |
Q |
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| T |
15921108 |
ttacctcgacccaaattatcataattgttaattaaaaatcccaaatcataacccgcttctttgcatagaatctcaagcattttgtttggaagctggttct |
15921009 |
T |
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| Q |
208 |
ccaacaataaagtatctctccatatgtgcatcagttggtcaaactt |
253 |
Q |
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| T |
15921008 |
ctaacaaattagtatctctccatatgtgcatcagttggtcaaactt |
15920963 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 130 - 253
Target Start/End: Original strand, 14060426 - 14060549
Alignment:
| Q |
130 |
aattgttaattaaaaattccaaatcaatacccatttcttcgcatagaatctcaagcattattcttggaagttgattctccaacaataaagtatctctcca |
229 |
Q |
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| T |
14060426 |
aattgttaactaaaaagttcaaatcaatgcctctttcattgcatataatctcaagcatttggtatggaagttggttctctaacaacgaaacatctctcca |
14060525 |
T |
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| Q |
230 |
tatgtgcatcagttggtcaaactt |
253 |
Q |
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| T |
14060526 |
tatatacatcaattggtcaaactt |
14060549 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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