View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1904_high_28 (Length: 220)
Name: NF1904_high_28
Description: NF1904
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1904_high_28 |
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Alignment Details
Target: chr7 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 201
Target Start/End: Complemental strand, 38197220 - 38197020
Alignment:
| Q |
1 |
aagtgttaattaaatcagttgcacagtccattcctacatattgtatgagcacttttctgttaccaactactttgggggaggaaattcagagaatgattaa |
100 |
Q |
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| T |
38197220 |
aagtgttaattaaatcagttgcacagtccattcctacatattgtatgagcacttttctgttaccaactactttgggggaggaaattcagagaatgattaa |
38197121 |
T |
|
| Q |
101 |
ttcattttggtgggggtcgaatagaagtcaaggtaaaggtataaactgcattaattgggacaaattgactatgagaaaggagtacggaggtatgagattc |
200 |
Q |
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| T |
38197120 |
ttcattttggtgggggtcgactagaagtcaaggtaaaggtataaactggattaattgggacaaattgactatgagaaaggagtacggaggtatgggattc |
38197021 |
T |
|
| Q |
201 |
a |
201 |
Q |
| |
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| |
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| T |
38197020 |
a |
38197020 |
T |
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Target: chr1 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 45 - 194
Target Start/End: Complemental strand, 19024926 - 19024777
Alignment:
| Q |
45 |
atgagcacttttctgttaccaactactttgggggaggaaattcagagaatgattaattcattttggtgggggtcgaatagaagtcaaggtaaaggtataa |
144 |
Q |
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| T |
19024926 |
atgagcacttttctgctaccaacaactttgggagaagagatccagaggatgattaattctttttggtggggtttgaatatatggcaaggtagagggatta |
19024827 |
T |
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| Q |
145 |
actgcattaattgggacaaattgactatgagaaaggagtacggaggtatg |
194 |
Q |
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| T |
19024826 |
attggctcatttgggacaaactcacaatgcgaaaggagtacggaggtatg |
19024777 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 47; Significance: 5e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 12 - 190
Target Start/End: Original strand, 25499508 - 25499686
Alignment:
| Q |
12 |
aaatcagttgcacagtccattcctacatattgtatgagcacttttctgttaccaactactttgggggaggaaattcagagaatgattaattcattttggt |
111 |
Q |
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|||||||| ||||| || ||||| |||||||| |||| |||||| | | ||| | || ||||| ||||| ||||| |||||||||||||| ||||||| |
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| T |
25499508 |
aaatcagtggcacaatcaattcccacatattgcatgaccactttcttactgccagcgacgttgggagaggagattcaaagaatgattaattctttttggt |
25499607 |
T |
|
| Q |
112 |
gggggtcgaatagaagtcaaggtaaaggtataaactgcattaattgggacaaattgactatgagaaaggagtacggagg |
190 |
Q |
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|||| || ||||| || |||||||||||||| || || || |||||||||||| || ||| | |||||||| ||||| |
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| T |
25499608 |
ggggatcaaataggaggcaaggtaaaggtatcaattggctttcttgggacaaattaacaatgcgtaaggagtatggagg |
25499686 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 30 - 139
Target Start/End: Complemental strand, 6509671 - 6509562
Alignment:
| Q |
30 |
attcctacatattgtatgagcacttttctgttaccaactactttgggggaggaaattcagagaatgattaattcattttggtgggggtcgaatagaagtc |
129 |
Q |
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||||| |||||||||||||||||||| | |||||||| || ||||||||||| ||||| | ||||||||| || || |||||||| | |||||| || | |
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| T |
6509671 |
attcccacatattgtatgagcactttcttattaccaacaacattgggggaggagattcaaataatgattaactctttctggtggggattgaataggaggc |
6509572 |
T |
|
| Q |
130 |
aaggtaaagg |
139 |
Q |
| |
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|||| ||||| |
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| T |
6509571 |
aaggcaaagg |
6509562 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 93 - 135
Target Start/End: Complemental strand, 18978761 - 18978719
Alignment:
| Q |
93 |
atgattaattcattttggtgggggtcgaatagaagtcaaggta |
135 |
Q |
| |
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||||||||||| ||||||||||| ||||||||||| ||||||| |
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| T |
18978761 |
atgattaattccttttggtggggttcgaatagaaggcaaggta |
18978719 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 93 - 135
Target Start/End: Original strand, 34211348 - 34211390
Alignment:
| Q |
93 |
atgattaattcattttggtgggggtcgaatagaagtcaaggta |
135 |
Q |
| |
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||||||||||| ||||||||||| ||||||||||| ||||||| |
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| T |
34211348 |
atgattaattccttttggtggggttcgaatagaaggcaaggta |
34211390 |
T |
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