View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1904_high_3 (Length: 464)
Name: NF1904_high_3
Description: NF1904
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1904_high_3 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 370; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 16 - 449
Target Start/End: Complemental strand, 50397773 - 50397341
Alignment:
| Q |
16 |
atgaattgtgcgcaaatttctaactattgcattcatttgttttttatttataatttgtaaccattgataagataaaatttgttnnnnnnntattacagca |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
50397773 |
atgaattgtgcgcaaatttctaactattgcattcatttgttttttatttataatttgtaaccattgataagataaaatttgttaaaaaaatattacagca |
50397674 |
T |
|
| Q |
116 |
aaatcttgtattccatttgtatatataagaatagaagaatagattggttattgtctccaaaaaaggaatagataagttacataactttggcattctgtta |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50397673 |
aaatcttgtattccatttgtatatataagaatagaagaatagattggttattgtctccaaaaaaggaatagataagttacataactttggcattctgtta |
50397574 |
T |
|
| Q |
216 |
ataccattaattagaataagnnnnnnnnnntctatttcatcattaaatttactcatagggtattaaaacttgaactgtttcacaattcacgccacgatga |
315 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50397573 |
ataccattaattagaataag-aaaaaaaaatctatttcatcattaaatttactcatggggtattaaaacttgaactgtttcacaattcacgccacgatga |
50397475 |
T |
|
| Q |
316 |
agtgtctctaagcataaacaaaatattgatagtcttaaatttcctatacataaatcatatcaatatcagtatcttcagttgctgatatagtacctgggga |
415 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
50397474 |
agtgtctctaagcataaacaaaatattgatagtcttaaatttcctatacataaatcatatcaaaatcagtatcttcagttgctgatatagtacctgggga |
50397375 |
T |
|
| Q |
416 |
agtggcaatgcagcaaaaagatctaggaaaaact |
449 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
50397374 |
agtggcaatgcagcaaaaagatctaggaaaaact |
50397341 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University