View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1904_high_8 (Length: 401)
Name: NF1904_high_8
Description: NF1904
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1904_high_8 |
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Alignment Details
Target: chr4 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 11 - 350
Target Start/End: Original strand, 35262073 - 35262412
Alignment:
| Q |
11 |
cacagacaaagatacattaaaaaccctaacacggacagagagattaaaagaatacaagtgaagttgnnnnnnnnnnnngttgttgtttgtgatggctggt |
110 |
Q |
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| T |
35262073 |
cacagacaaatatacattaaaaaccctaacacggacagagagattaaaagaatacaagtgaagttgtttgttttttttgttgttgtttgtgatggctggt |
35262172 |
T |
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| Q |
111 |
gtttctagcagaactcgtagcaagaatattccgttgtttggttctcttttacttggtggttcatcaaaacggagaaagagtgatgaagaagataaggggt |
210 |
Q |
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| T |
35262173 |
gtttctagcagaactcgtagcaagaatgttccgttgtttggttctcttttacttggtggttcatcaaaacggagaaagagtgatgaagaagataaggggt |
35262272 |
T |
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| Q |
211 |
tggactatgtttctcgttctnnnnnnnggaagatgaacgaagaaccttttgttgttcctgcagatgctgaggtagtttccatcgatgatgatgaatatga |
310 |
Q |
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| T |
35262273 |
tggactatgtttctcgttctaaaaaaaggaagatgaacgaagaaccttttgttgttcctgcagatgctgaggtagtttccatcgatgatgatgaatatga |
35262372 |
T |
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| Q |
311 |
agatgtcggtcaagaaggttcagagcatagtgatgacaag |
350 |
Q |
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| T |
35262373 |
agatgttggtcaagaaggttcagagcatagtgatgacaag |
35262412 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 146; Significance: 8e-77; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 146; E-Value: 8e-77
Query Start/End: Original strand, 108 - 346
Target Start/End: Complemental strand, 16993145 - 16992907
Alignment:
| Q |
108 |
ggtgtttctagcagaactcgtagcaagaatattccgttgtttggttctcttttacttggtggttcatcaaaacggagaaagagtgatgaagaagataagg |
207 |
Q |
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| T |
16993145 |
ggtgtttcgagcagaactcgtagcaagaatgttccgttgtttggttctcttttacttggtgggtcatcaaagcggagaaagagtgatgaagaagataagg |
16993046 |
T |
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| Q |
208 |
ggttggactatgtttctcgttctnnnnnnnggaagatgaacgaagaaccttttgttgttcctgcagatgctgaggtagtttccatcgatgatgatgaata |
307 |
Q |
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| T |
16993045 |
gtttggaatatgtttctggttctaaaaaaagaaagatgactgaagaaccttttgttgttcctgcagatgccgaggtaatttccatcgatgatgatgaata |
16992946 |
T |
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| Q |
308 |
tgaagatgtcggtcaagaaggttcagagcatagtgatga |
346 |
Q |
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| T |
16992945 |
tgaagatgttggtgaagaagggttggaacatagtgatga |
16992907 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 94 - 204
Target Start/End: Original strand, 10600735 - 10600845
Alignment:
| Q |
94 |
tgtttgtgatggctggtgtttctagcagaactcgtagcaagaatattccgttgtttggttctcttttacttggtggttcatcaaaacggagaaagagtga |
193 |
Q |
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| T |
10600735 |
tgtttgtgatggctggtgtttctagcataactcataccaacaatgttcccttgatcaggtttctttcaaatggtggttcatcaaagcggagaaagagtga |
10600834 |
T |
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| Q |
194 |
tgaagaagata |
204 |
Q |
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|||||| |||| |
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| T |
10600835 |
tgaagatgata |
10600845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 93 - 152
Target Start/End: Complemental strand, 17008904 - 17008845
Alignment:
| Q |
93 |
ttgtttgtgatggctggtgtttctagcagaactcgtagcaagaatattccgttgtttggt |
152 |
Q |
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| T |
17008904 |
ttgtttgtgatggctggtctttctaacagaactcgtagcaagaatgttccattgtttggt |
17008845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 107 - 189
Target Start/End: Complemental strand, 16824981 - 16824899
Alignment:
| Q |
107 |
tggtgtttctagcagaactcgtagcaagaatattccgttgtttggttctcttttacttggtggttcatcaaaacggagaaaga |
189 |
Q |
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||||||||||||||||||||||||||| ||| |||| |||||| ||| | || ||||| ||| ||||||||||||||||||| |
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| T |
16824981 |
tggtgtttctagcagaactcgtagcaaaaatgttccattgtttagttgtgttccacttgttgggtcatcaaaacggagaaaga |
16824899 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 97 - 158
Target Start/End: Complemental strand, 16969465 - 16969404
Alignment:
| Q |
97 |
ttgtgatggctggtgtttctagcagaactcgtagcaagaatattccgttgtttggttctctt |
158 |
Q |
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|||| ||||||||| |||||||||||||||||||||| ||| |||| |||||||||| |||| |
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| T |
16969465 |
ttgtaatggctggtatttctagcagaactcgtagcaaaaatgttccattgtttggttgtctt |
16969404 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 91 - 148
Target Start/End: Complemental strand, 16978609 - 16978552
Alignment:
| Q |
91 |
tgttgtttgtgatggctggtgtttctagcagaactcgtagcaagaatattccgttgtt |
148 |
Q |
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|||||||||| |||||| ||||||| ||||||||||| ||||||||| |||| ||||| |
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| T |
16978609 |
tgttgtttgtaatggctagtgtttcaagcagaactcgaagcaagaatgttccattgtt |
16978552 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 110 - 159
Target Start/End: Complemental strand, 17008767 - 17008718
Alignment:
| Q |
110 |
tgtttctagcagaactcgtagcaagaatattccgttgtttggttctcttt |
159 |
Q |
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||||||| |||||||||||||||| ||| | || |||||||||||||||| |
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| T |
17008767 |
tgtttctggcagaactcgtagcaaaaatgtgccattgtttggttctcttt |
17008718 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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