View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1904_low_11 (Length: 399)
Name: NF1904_low_11
Description: NF1904
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1904_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 363; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 19 - 389
Target Start/End: Original strand, 50087276 - 50087646
Alignment:
| Q |
19 |
ttcagtagataattgaagattcttttgtaactcatcaatcacagcacgaccaccagcatgtatacaaaaatgttcaaaagcttgtttaaaatcaggtata |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50087276 |
ttcagtagataattgaagattcttttgtaactcatcaatcacagcacgaccaccagcatgtatacaaaaatgttcaaaagcttgtttaaaatcaggtata |
50087375 |
T |
|
| Q |
119 |
tatggtttccatttagggttaaagatttttctaccaatgagtgtgattagaaaaagtaattgttctgaagctggtaaaacaagaggacccattgttgtta |
218 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50087376 |
tatggtttccatttagggttaaatatttttctaccaatgagtgtgatgagaaaaagtaattgttctgaagctggtaaaacaagaggacccattgttgtta |
50087475 |
T |
|
| Q |
219 |
tatttgatttaagtgcttcacctgcaattgccataagatctttttgaagtgatattccaactttaccttctttgtcttcttcttcaaaaacacatttata |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50087476 |
tatttgatttaagtgcttcacctgcaattgccataagatctttttgaagtgatattccaactttaccttctttgtcttcttcttcaaaaacacatttata |
50087575 |
T |
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| Q |
319 |
tgctttatcatcacctcctttatgtgttctaacaacatgaactaatctgtattttgctcttcttttctctg |
389 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50087576 |
tgctttatcatcacctcctttatgtgttctaacaacatgaactaatctgtattttgctcttcttttctctg |
50087646 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 68 - 126
Target Start/End: Complemental strand, 15239491 - 15239433
Alignment:
| Q |
68 |
ccaccagcatgtatacaaaaatgttcaaaagcttgtttaaaatcaggtatatatggttt |
126 |
Q |
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| T |
15239491 |
ccaccagcatgaatacaaaaatgctcaaaagctaatttaaaatcaggaatgtatggttt |
15239433 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 68 - 114
Target Start/End: Complemental strand, 34053190 - 34053144
Alignment:
| Q |
68 |
ccaccagcatgtatacaaaaatgttcaaaagcttgtttaaaatcagg |
114 |
Q |
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||||||||||| ||||||||||| ||||||||| |||||||||||| |
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| T |
34053190 |
ccaccagcatgaatacaaaaatgctcaaaagctaatttaaaatcagg |
34053144 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 161; Significance: 9e-86; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 161; E-Value: 9e-86
Query Start/End: Original strand, 19 - 379
Target Start/End: Original strand, 23271537 - 23271897
Alignment:
| Q |
19 |
ttcagtagataattgaagattcttttgtaactcatcaatcacagcacgaccaccagcatgtatacaaaaatgttcaaaagcttgtttaaaatcaggtata |
118 |
Q |
| |
|
||||| ||||| ||||||||||| ||||||||||| ||||| ||||| ||||||||||| ||||||||||| ||||| |||||||| |||||||| ||| |
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| T |
23271537 |
ttcagcagatagctgaagattcttctgtaactcatcgatcacggcacgtccaccagcatgaatacaaaaatgctcaaacgcttgtttgaaatcaggaata |
23271636 |
T |
|
| Q |
119 |
tatggtttccatttagggttaaagatttttctaccaatgagtgtgattagaaaaagtaattgttctgaagctggtaaaacaagaggacccattgttgtta |
218 |
Q |
| |
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|| || ||| ||||||||| |||||||| | ||||||||||||| ||||| ||||||||||||||||| |||| |||||||||||| || ||||||| |
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| T |
23271637 |
taaggcttcattttagggttgaagattttctttccaatgagtgtgaaaagaaagagtaattgttctgaagcaggtagaacaagaggaccaatagttgtta |
23271736 |
T |
|
| Q |
219 |
tatttgatttaagtgcttcacctgcaattgccataagatctttttgaagtgatattccaactttaccttctttgtcttcttcttcaaaaacacatttata |
318 |
Q |
| |
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|||||||||| | |||||| ||||| || ||||||||||| ||||||||||| |||||||||||||||||| ||||||||||||| ||||| || || |
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| T |
23271737 |
tatttgatttcaatgcttctcctgctatagccataagatccttttgaagtgaaattccaactttaccttctctgtcttcttcttcgaaaacgcaacggta |
23271836 |
T |
|
| Q |
319 |
tgctttatcatcacctcctttatgtgttctaacaacatgaactaatctgtattttgctctt |
379 |
Q |
| |
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|||||||| ||||||||||| || ||||||||||| || | ||||| |||||||||||| |
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|
| T |
23271837 |
agctttatcgtcacctcctttgtgagttctaacaacttgcatcaatctatattttgctctt |
23271897 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 6e-16; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 49 - 120
Target Start/End: Complemental strand, 26453392 - 26453321
Alignment:
| Q |
49 |
ctcatcaatcacagcacgaccaccagcatgtatacaaaaatgttcaaaagcttgtttaaaatcaggtatata |
120 |
Q |
| |
|
||||||||||||||| | |||||||||||| ||||||||||| |||||||| | ||||||||||||||||| |
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| T |
26453392 |
ctcatcaatcacagctctaccaccagcatgaatacaaaaatgctcaaaagcaagcttaaaatcaggtatata |
26453321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 292 - 360
Target Start/End: Complemental strand, 26453149 - 26453081
Alignment:
| Q |
292 |
gtcttcttcttcaaaaacacatttatatgctttatcatcacctcctttatgtgttctaacaacatgaac |
360 |
Q |
| |
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||||| ||||| | ||||||| ||| |||||||||||||| | |||||||| || || ||||||||||| |
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| T |
26453149 |
gtcttgttcttgataaacacacttaaatgctttatcatcagcacctttatgagtcctcacaacatgaac |
26453081 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 153 - 312
Target Start/End: Original strand, 33446615 - 33446775
Alignment:
| Q |
153 |
caatgagtgtgattagaaaaagtaattgttctgaagctggtaaaacaagaggacccattgttgttatatttgatttaagtgcttcacctgcaattgccat |
252 |
Q |
| |
|
|||| ||||||| ||||| || ||||||| |||| | || | ||||||| | || || ||| ||||||||||||| | |||||| ||| | |||||||| |
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| T |
33446615 |
caataagtgtgaaaagaaagagcaattgttttgaaaccggaagaacaagatggccaatagttattatatttgatttcaatgcttctcctactattgccat |
33446714 |
T |
|
| Q |
253 |
aagatcttttt-gaagtgatattccaactttaccttctttgtcttcttcttcaaaaacaca |
312 |
Q |
| |
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||||| | | ||| ||| |||||||||||| |||||||||||||||| ||||||||||| |
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| T |
33446715 |
aagattactctcgaaatgaaattccaactttagcttctttgtcttcttcctcaaaaacaca |
33446775 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 31 - 127
Target Start/End: Original strand, 49041276 - 49041372
Alignment:
| Q |
31 |
ttgaagattcttttgtaactcatcaatcacagcacgaccaccagcatgtatacaaaaatgttcaaaagcttgtttaaaatcaggtatatatggtttc |
127 |
Q |
| |
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|||||||||||| || |||||||||| ||||| | ||||||||||| ||||| ||||||||||||||| ||| ||||| |||||||| |||||| |
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| T |
49041276 |
ttgaagattcttctgcaactcatcaagaacagctcttccaccagcatgaatacagaaatgttcaaaagctaatttgaaatctggtatataaggtttc |
49041372 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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