View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1904_low_15 (Length: 370)

Name: NF1904_low_15
Description: NF1904
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1904_low_15
NF1904_low_15
[»] chr1 (2 HSPs)
chr1 (55-184)||(47396646-47396775)
chr1 (269-361)||(47397055-47397147)
[»] chr7 (2 HSPs)
chr7 (60-102)||(21933814-21933856)
chr7 (284-361)||(39038218-39038295)
[»] chr5 (2 HSPs)
chr5 (67-117)||(17273331-17273381)
chr5 (67-117)||(17306198-17306248)
[»] chr4 (1 HSPs)
chr4 (284-332)||(51758933-51758981)


Alignment Details
Target: chr1 (Bit Score: 126; Significance: 7e-65; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 55 - 184
Target Start/End: Original strand, 47396646 - 47396775
Alignment:
Q  55 agaccacgaagtgggctttcatctcggctatggcaacgccaattgggtggattggaagcggaatgggtaaggacaacaaaagagctgaagaggaaagttg 154  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47396646 agaccacgaagtgggctttcacctcggctatggcaacgccaattgggtggattggaagcggaatgggtaaggacaacaaaagagctgaagaggaaagttg 47396745  T
Q  155 aaattggaaaatacatgaagcattacgtag 184  Q
    ||||||||||||||||||||||||||||||    
T  47396746 aaattggaaaatacatgaagcattacgtag 47396775  T

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Target: chr1; HSP #2
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 269 - 361
Target Start/End: Original strand, 47397055 - 47397147
Alignment:
Q  269 ttgttgacgtagagaaacaatagcacctgagaagtagattgaaaatttagcacatgaaaaataaagattgaaactataacacctaagaataat 361  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||| ||||||||||||||    
T  47397055 ttgttgacgtagagaaacaatagcacctgagaagtagattgaaaatttagcacctgaaaaataaagactgaaactatagcacctaagaataat 47397147  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 60 - 102
Target Start/End: Original strand, 21933814 - 21933856
Alignment:
Q  60 acgaagtgggctttcatctcggctatggcaacgccaattgggt 102  Q
    |||||| ||||||||| |||||||||| |||||||||||||||    
T  21933814 acgaagagggctttcacctcggctatgacaacgccaattgggt 21933856  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 284 - 361
Target Start/End: Original strand, 39038218 - 39038295
Alignment:
Q  284 aacaatagcacctgagaagtagattgaaaatttagcacatgaaaaataaagattgaaactataacacctaagaataat 361  Q
    ||||||||||| |  ||||| || ||||| |||||||| ||||||||| ||| ||||| | ||||| |||||||||||    
T  39038218 aacaatagcacttacgaagttgactgaaattttagcacctgaaaaatagagactgaaattttaacatctaagaataat 39038295  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 67 - 117
Target Start/End: Original strand, 17273331 - 17273381
Alignment:
Q  67 gggctttcatctcggctatggcaacgccaattgggtggattggaagcggaa 117  Q
    ||||||||| ||||| |||||||||||| |||||||| ||| |||||||||    
T  17273331 gggctttcaactcggttatggcaacgccgattgggtgaatttgaagcggaa 17273381  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 67 - 117
Target Start/End: Original strand, 17306198 - 17306248
Alignment:
Q  67 gggctttcatctcggctatggcaacgccaattgggtggattggaagcggaa 117  Q
    ||||||||| ||| | |||||||||||| |||||||| |||||||||||||    
T  17306198 gggctttcaactcagttatggcaacgccgattgggtgaattggaagcggaa 17306248  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 284 - 332
Target Start/End: Complemental strand, 51758981 - 51758933
Alignment:
Q  284 aacaatagcacctgagaagtagattgaaaatttagcacatgaaaaataa 332  Q
    ||||||||||| || |||||||||| ||| |||||||| ||||||||||    
T  51758981 aacaatagcacatgcgaagtagattaaaattttagcacctgaaaaataa 51758933  T

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