View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1904_low_17 (Length: 343)
Name: NF1904_low_17
Description: NF1904
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1904_low_17 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 178; Significance: 6e-96; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 178; E-Value: 6e-96
Query Start/End: Original strand, 155 - 332
Target Start/End: Complemental strand, 248281 - 248104
Alignment:
| Q |
155 |
gaaatacctagctagctagaagatgtgtaaaaaatacgacccttttataagttgcatttatcattttaacgtatattttgaaatgtaatagtgtagttaa |
254 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
248281 |
gaaatacctagctagctagaagatgtgtaaaaaatacgacccttttataagttgcatttatcattttaacgtatattttgaaatgtaatagtgtagttaa |
248182 |
T |
|
| Q |
255 |
tgtgtttattttatatatgagtgttagtaaagcaccattttgtttatggattatagatatgtccgattttaatttctt |
332 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
248181 |
tgtgtttattttatatatgagtgttagtaaagcaccattttgtttatggattatagatatgtccgattttaatttctt |
248104 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 7 - 109
Target Start/End: Complemental strand, 248437 - 248333
Alignment:
| Q |
7 |
caatcacctccttttattttaggggaaggggaccccacaacttggattcctcttgtgtgttctctc--tctcgtccatcacctcctaaaccaaaatcctt |
104 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
248437 |
caatcacctccttttattttaggggaaggggaccccacaacttggattcctcttgtgtgttctctctctctcgtccatcacctcctaaaccaaaatcctt |
248338 |
T |
|
| Q |
105 |
tcttc |
109 |
Q |
| |
|
||||| |
|
|
| T |
248337 |
tcttc |
248333 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 242 - 274
Target Start/End: Complemental strand, 53656054 - 53656022
Alignment:
| Q |
242 |
atagtgtagttaatgtgtttattttatatatga |
274 |
Q |
| |
|
||||||||||||||||||||||||||| ||||| |
|
|
| T |
53656054 |
atagtgtagttaatgtgtttattttatgtatga |
53656022 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University