View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1904_low_21 (Length: 305)
Name: NF1904_low_21
Description: NF1904
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1904_low_21 |
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| [»] chr7 (3 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 289; Significance: 1e-162; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 13 - 305
Target Start/End: Complemental strand, 42475762 - 42475470
Alignment:
| Q |
13 |
gagatgaaatatccacttgctgaatcaaaatgctgcattcaaacatagatatcttgttcaacaatgatcttcctccatatatgacaaagcagagaaaatt |
112 |
Q |
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| T |
42475762 |
gagatgaaatatccacttgctgaatcaaaatgctgcattcaaacatagatatcttgttcaacaatgatcttcctccatatacgacaaagcagagaaaatt |
42475663 |
T |
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| Q |
113 |
ttacaatgctcaaatgtctatttcaatttgacaaaaccaagatcaatttccccaatcctcatttgaaaataagatataaatgaataaatgatcatcaaca |
212 |
Q |
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| T |
42475662 |
ttacaatgctcaaatgtctatttcaatttgacaaaaccaagatcaatttccccaatcctcatttgaaaataagatataaatgaataaatgatcatcaaca |
42475563 |
T |
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| Q |
213 |
tatttatcaaacaaatgatcaaacaggcaacatgtttaacaaacagctaaataatcatttagcaatcatatatcggttcagcactgagctttt |
305 |
Q |
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| T |
42475562 |
tatttatcaaacaaatgatcaaacaggcaacatgtttaacaaacagctaaataatcatttagcaatcatatatcggttcagcactgagctttt |
42475470 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 146 - 284
Target Start/End: Complemental strand, 42481016 - 42480885
Alignment:
| Q |
146 |
aaaccaagatcaatttccccaatcctcatttgaaaataagatataaatgaataaatgatcatcaacatatttatcaaacaaat-gatcaaacaggcaaca |
244 |
Q |
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|||| |||||||||||||| | ||||||||||||||||||||||||| ||||| |||||| ||| ||| ||| | | |||||||||||||||| |
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| T |
42481016 |
aaacaaagatcaatttcccaagccctcatttgaaaataagatataaat-aataa-------tcaacagattgatccaaccatttgatcaaacaggcaaca |
42480925 |
T |
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| Q |
245 |
tgtttaacaaacagctaaataatcatttagcaatcatata |
284 |
Q |
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| T |
42480924 |
tgtttaacaaacagctaaataacgatttagcaatcatata |
42480885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 13 - 93
Target Start/End: Complemental strand, 42468346 - 42468267
Alignment:
| Q |
13 |
gagatgaaatatccacttgctgaatcaaaatgctgcattcaaacatagatatcttgttcaacaatgatcttcctccatata |
93 |
Q |
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|||||||||||||||||| | |||||||||||||||||||||| |||||||||||||| ||||||||||| ||||||||| |
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| T |
42468346 |
gagatgaaatatccacttac-gaatcaaaatgctgcattcaaatatagatatcttgttagacaatgatctttctccatata |
42468267 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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